About This Database   

Annotated species Oryza sativa Annotation built on MSU 7 Total number of genes 56,832
Library type MethylC-seq Total bp in genome 375,096,285 Protein coding 39,889
Total number of libraries 5 Total chrs or contigs 16 Transposon related 16,943

The db will mainly include the published rice bs-seq libraries.

Access to this web site and the data contained herein are provided for research purposes only. No commercial rights of any nature are granted.

Basic Queries

Please enter specific information to retrieve data.
Adjust libraries/reads to display on the control panel (optional).

Protein or gene ID
Using an IRGSP gene identifier? RAPDB version converter

e.g. LOC_Os01g74520

Query by Chromosome Position

Click on a region of any chromosome for which you would like to retrieve the map. Because of the size of chromosomes, clicking on the diagram below will take you to a second map where you can refine the position. Note that if the genome has a mix of both chromosomes and small contigs or scaffolds, we only show images for the defined chromosomes, and contigs must be accessed via their ID.

0 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 40,000,00040,000,000 - 43,270,9230 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 35,937,25035,937,250 - 35,937,2500 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 36,413,81936,413,819 - 36,413,8190 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 35,502,69435,502,694 - 35,502,6940 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 29,958,43429,958,434 - 29,958,43429,958,434 - 29,958,43429,958,434 - 29,958,4340 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 31,248,78731,248,787 - 31,248,78731,248,787 - 31,248,7870 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 29,697,62129,697,621 - 29,697,62129,697,621 - 29,697,62129,697,621 - 29,697,6210 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 28,443,02228,443,022 - 28,443,02228,443,022 - 28,443,02228,443,022 - 28,443,0220 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 23,012,72023,012,720 - 23,012,72023,012,720 - 23,012,72023,012,720 - 23,012,72023,012,720 - 23,012,7200 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 23,207,28723,207,287 - 23,207,28723,207,287 - 23,207,28723,207,287 - 23,207,28723,207,287 - 23,207,2870 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 29,021,10629,021,106 - 29,021,10629,021,106 - 29,021,10629,021,106 - 29,021,1060 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 27,531,85627,531,856 - 27,531,85627,531,856 - 27,531,85627,531,856 - 27,531,8560 - 134,525134,525 - 134,525134,525 - 134,525134,525 - 134,525134,525 - 134,525134,525 - 134,525134,525 - 134,525134,525 - 134,525134,525 - 134,5250 - 490,520490,520 - 490,520490,520 - 490,520490,520 - 490,520490,520 - 490,520490,520 - 490,520490,520 - 490,520490,520 - 490,520490,520 - 490,5200 - 633,585633,585 - 633,585633,585 - 633,585633,585 - 633,585633,585 - 633,585633,585 - 633,585633,585 - 633,585633,585 - 633,585633,585 - 633,5850 - 592,136592,136 - 592,136592,136 - 592,136592,136 - 592,136592,136 - 592,136592,136 - 592,136592,136 - 592,136592,136 - 592,136592,136 - 592,136 Chromosome image

If you know the start and/or end of your genomic region, please enter one or both coordinates here to go directly to our chromosome viewer. If you only enter one coordinate, we use a default size of 100 kb for the viewer.