Arabidopsis small RNA Gene Analysis

The basic information for the gene you have selected is displayed below. The "small RNA Information" section sums the reads that map to either strand of the gene of interest, indicating the total (normalized) read abundance, the count of distinct (different) sequences, and providing links to a downloadable file with that information, and web pages that provide detailed information on the complete set of individual sequences derived from the gene. View a legend that explains the icons and colors in the image below. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.



AGGAGATTTCAAATTGGATTAGGAGATTTCAAATTGGATTAGGAGATTTCAAATTGGATTTTCTCTAGGAGATTTCAAATTGGATCCGGTTCTCTAGGAGATTTCAAATTGGATTGGGATGAACCCCACAGGGCGTTGAGACCAATCTCCCATCCTCGTTTCCAGAATGGTGATTTGTTGAAGATTATTGAAAATGGTGATTTGTTGAAGATGCTATTGAAAATGGTGATTTGTTGAAGAACGAGGCTTGAAGGCTATTTTCTGAAACGAGGCTTGAAGGCTATTGAAACCGCTTCTGAAACGAGGCTTGAAGGCTATTGAATCCGCTTCTGAAACGAGAATCATGATCCGGTTCGGTTTAAAGAAGAGAAAATGATGATGGAAGAGAAAATGATGATGATGAAGCTGTAGTATCGCAGGTCCAACAAGCTGTAGTATCGCAGGTCCAAATAAAAGCACTGAGAGCTGAACGCATCGAATCCTGTATAATAGAGACTTGCAGACTCCAGAGAAAAGAGCCATTAATAGTGGGAGTAGGGTTTTTGTGTTTGGTTATGTTGTTTGGTTAGTCGGAGTGTTGTTTGGTTAGTCGGAGACAGGGAGACAGAGTAAGAAGACATAGACAGAGTAAGAAGACATCAGACAGAAGACATCAGACACATGAAATTATGTCTTCTTACTCTGTCTCCTCAGACACATGAAATTTGAAACAACATTAACATAACCAATATATACACCCATGATCAATGAGAACTCACATAAAAAAATATTTCTAGCCCTACCAAGGCGGTATCAACTACACCAAGGCGGTATCAACTACTAAACCAAGGCGGTATCAACTACTAATTTGGTCTATGTACACCGAGTTATAGACCAAACCAAGGCGGTATCCATAGACCAAACCAAGGCGACATAGACCAAACCAAGGCGACATAGACCAAACCAAGGCGGACATAGACCAAACCAAGGCGGTTACATAGACCAAACCAAGTACATAGACCAAACCAAGGCTACATAGACCAAACCAAGGCGGTACATAGACCAAACCAAGGTACATAGACCAAACCAAGGCTGTACATAGACCAAACCAAGGGTGTACATAGACCAAACCAAGGTGTACATAGACCAAACCAAGGCGGGTGTACATAGACCAAACCAACGGTGTACATAGACCAAACCATCGGTGTACATAGACCAAACTCGGTGTACATAGACCAAACCTCGGTGTACATAGACCAAACCACTCGGTGTACATAGACCAAACACTCGGTGTACATAGACCAAAAACTCGGTGTACATAGACAACTCGGTGTACATAGACCAACTCGGTGTACATAGACCAAACTCGGTGTACATAGACCAAAACTCGGTGTACATAGACCAAAAACTCGGTGTACATAGACCAAACAAACTCGGTGTACATAGACAAACTCGGTGTACATAGACCAAACTCGGTGTACATAGACCAAAACTCGGTGTACATAGACCAAAAAACTCGGTGTACATAGACCAAACCAAACTCGGTGTACATAGACCAAACTCGGTGTACATAGACCACAAACTCGGTGTACATAGAACAAACTCGGTGTACATAGACACAAACTCGGTGTACATAGACCAACAAACTCGGTGTACATAGAAACAAACTCGGTGTACATAGACGAACAAACTCGGTGTACATAGACCTGAACAAACTCGGTGTACATTGAACAAACTCGGTGTACATATGAACAAACTCGGTGTACATAGTGAACAAACTCGGTGTACATAGACACTGAACAAACTCGGTGTACACTGAACAAACTCGGTGTACATAACTGAACAAACTCGGTGTACATAGAACTGAACAAACTCGGTGTACGAACTGAACAAACTCGGTGGAACTGAACAAACTCGGTGTAGAACTGAACAAACTCGGTGAGAACTGAACAAACTCGGTGTAAGAACTGAACAAACTCGGAAGAACTGAACAAACTCGGTAAGAACTGAACAAACTCGGTGAAGAACTGAACAAACTCGGTGTAAGAACTGAACAAACTCGGTGTAAAGAACTGAACAAACTCGGTGTACAAAGAACTGAACAAACTCGGTAAAGAACTGAACAAACTCGGTGAAAGAACTGAACAAACTCGGTGTAAAGAACTGAACAAACTCGGTGTAGAAAGAACTGAACAAACTCGGTGAAAGAACTGAACAAACTCGGTGTAGAAAGAACTGAACAAACTCGAGAAAGAACTGAACAAACTCGGTAGAAAGAACTGAACAAACTCGGTGAGAAAGAACTGAACAAACTCGGTGTTAGAAAGAACTGAACAAACTTAGAAAGAACTGAACAAACTCTATAGAAAGAACTGAACAAACTCGGTGTTATATAGAAAGAACTGAACATAGGATGGAGCTGAACAATAGGATGGAGCTGAACATACTCAGGATGGAGCTGAACATACTCGGTGGATGGAGCTGAACATACTCGGTGATGGAGCTGAACATACTCGGTGTAACATACTCGGTGTACATAAACATACTCGGTGTACATAAACTACTCGGTGTACATAAACCAAGCCCCGAGTATGTTCAGCTCCATTACACCGAGTATGTTCAGCTCATGTACACCGAGTATGTTCAGCTATGTACACCGAGTATGTTTATGTACACCGAGTATGTTCAAACCAAGCCAAGGCGGTAGAAAACCAAGCCAAGGCGGTAGAAATATTATGTACACCGAGTATGTTTATGTACACCGAGTATGTTTTATGTACACCGAGTATGTTCTTTATGTACACCGAGTATGTTGTTTATGTACACCGAGTATTTGGTTTATGTACACCGAGTTGGTTTATGTACACCGAGTACTTGGTTTATGTACACCGAGGCTTGGTTTATGTACACCGAGGGCTTGGTTTATGTACACCGGCTTGGTTTATGTACACCGGGCTTGGTTTATGTACACCGATGGCTTGGTTTATGTACATGGCTTGGTTTATGTACACTGGCTTGGTTTATGTACACCTGGCTTGGTTTATGTACACCGTTGGCTTGGTTTATGTACTTGGCTTGGTTTATGTACATTGGCTTGGTTTATGTACACTTGGCTTGGTTTATGTACACCTTGGCTTGGTTTATGTACACCGCTTGGCTTGGTTTATGTACCTTGGCTTGGTTTATGTACACCTTGGCTTGGTTTATGTACACCCCTTGGCTTGGTTTATGTACCCTTGGCTTGGTTTATGTACATCTTATTAGAATCTGAAATCTGAGGTTATCTGACCGTAATAGCTATAAAAACTGCAGAATCACGATAAACTGCAGAATCACGATTTAGCCATAAGTAGGATGGAGAAAAGGAAAGTAGGATGGAGAAAAGGGCATAGTGGATTCTGATAAGAAATTGTTATTTAGTGGATTCTGATAAGAAATTGTTATTGTAGTGGATTCTGATAAGAAATTGTAGTGGATTCTGATAAGAAATTGTTATATGTAGTGGATTCTGATAAGAAATTGTTATTGATGTAGTGGATTCTGATTGATGTAGTGGATTCTGATAAGTGATGTAGTGGATTCTGATAAGAAATTGTTATGATGTAGTGGATTCTGATTTTTATTAGGCCGGACACAATATCCATCTCTGGCGCATAAAAATGGGATCATCTCTGGCGCATAAAAATGGGACGATTCATCTCTGGCGCATAAAAATTGACGATTCATCTCTGGCGCTTGACGATTCATCTCTGGCGCATAAAAATGGGAACTTTTTGACGATTCATCTCTGGCGCATAACACTAGATTCGAGAACTTGACTAGTGATTCTGTTGACTTTTTGACGATCGAATCTAGTGATTCTGTTGACTTGGGCTTATCGTCAAGTCCTCGAAGCTTTTGAGTATTTTTGGGCTTACGAGAAGGTGGCTCGAAGACGAGAAGGTGGCTCGAAGCTTTTCTTGTACGAGAAGGTGGCTCGAAGCTTGACTTGTACGAGAAGGTCCTCGTGACTTGTACGAGAAGGCCGGAACTGGCCTCGTGACTTGTACGAGAAGGACCGGAACTGGCCTCGTGACTTCGCACCGGAACTGGCCTCGTGACTTGTACGCACCGGAACTGGCCTCGTGACTACACGCACCGGAACTGGCCTCGTGACTAACACGCACCGGAACTGGCCAGCAACACGCACCGGAACTGGCCTGCAGATTGCTGGGTTTCTTGCATCATGAAACTTGAGCCTCTGACTGCTTTTCTGGACAATGTACCTGACACTGAGTGTCTGGACAATGTACCTGACGTGTCTGGACAATGTACCACGTGTCTGGACAATGTACCTGATCCCGGACCTGCTCAAAGGTCCCGGACCTGCTCAAAGTTGCTCTAACGTGTCCCGGACCTGCTCAAAGTTGTTGTGTCCCGGACCTGCTCCTTGTGTCCCGGACCTGCTCAAAGTTGCTCTAACACTTGTGTCCCGGACCTGCTCGACTTGTGTCCCGGACCTGCTGACTTGTGTCCCGGACCTGCTCAGACTTGTGTCCCGGACCTGCTCTACTTCCAGACTTGTGTCCCGGACCCATCTGGATGCTTTGAGAGAAATTGCAAAACTCAATCATCTGGATGCTTTGAGAGAATTAGGCAATCATCTGGATATTAGGCAATCATCTGGATGCTTATACTAAGAGAGCTTGAGGCAAAAGAAACCATACTAAGAGAGCTTGAGGCGATGGAACAAGAAACCATACTAAGAGAGCTCTCTTTCCTGGAGACTGTCAGCGAGTGATGGAACAAGAAACCAGCGAGTGATGGAACAAGAAACCATACGAGCGAGTGATGGAACAAGAGAGCGAGTGATGGAACAAGAAACAGAGCGAGTGATGGAACAAGAAACCGAGAGCGAGTGATGGAACAAAAGAGAGCGAGTGATGGAACAAGAAAAAGAGAGCGAGTGATGGAACAAGAAGAAAGAGAGCGAGTGATGGAACAAGAAACCCTCCAGGAAAGAGAGCGAGTGATGGAACAGTTTGCTTTTACTCTGCCATTACAAATATTACCCTGAAGTTCTTGAGACTTACAAATATTACCCTGAAGTTAGAACGATATTCTTGAGACAGGGAACGATATTCTTGAGACTTACAAAGGGCTTATTCTCGCAGGGAAAACATCAGGGCTTATTCTCGCAGGTAGAACATCAGGGCTTATTCTCAAGTAGAACATCAGGGCTAAAGTAGAACATCAGGGCTTGAAAGTAGAACATCAGGGCTTAGTGAAAGTAGAACATCAGGGCTGGTGAAAGTAGAACATCAGGGCTTTGGTGAAAGTAGAACATCAGGATGGTGAAAGTAGAACATCAGGGCTGATGGTGAAAGTAGAACATCTGGATGGTGAAAGTAGAACATCTTGGATGGTGAAAGTAGAACTTGGATGGTGAAAGTAGAACATCAGGGCTAAGCCATCTGTTCTCTTGCCCGTATCCGAAGCCATCTGTTCTCTTGCTATAAACAAGTGTCTATCCGAAATTTTCCGCTGCCTTGGAGACTACTCTTCTGTAACTCTATGGACTTATGGACTGAGATGATAGAAGAAAACATGGTGAAAGCTCGAAAACATGGTGAAAGCTCAAAACATGGTGAAAGCTCATTATATGACAAAGTAAGTAACAGAAGCTGGATTATATGACAAAGGTCAAGAAGCTGGATTATATGACAAATGTCAAGAAGCTGGATTCATCAATGTCAAGAAGCTCACATCAATGTCAAGAAGCTGGTCGAAGCTGCACATCAATGTCACTTGGTCGAAGCTGCACATCAATGTCTTGAGACAACAGTTCTTGGTCGAAGCTGTTCTAGATTGAGACAACAATTCTAGATTGAGACAACCCTGATTCTAGATTGAGACATCCCTGATTCTAGATTGAGACATCTGGTGAAGAAGGTCAGCTTGGAAGAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAATTGGAGCAAGAGGTTCTGGTGAAGAAGCTTGGAGCAAGAGGTTCTGGTGTGACTGAGATTCTGCTTCGAGTGACTGAGATTCTGCTTCGAGAACTGACTGAGATTCTGCTTCGAACTGACTGAGATTCTGCTTACTGACTGAGATTCTGCTTCGAGAATACTGACTGAGATTCTGCTTCGAGAAAGAGGTCTACTGACTGAGATTCTGCTGCTACTGACTGAGATTCTCAGCTACTGACTGAGATTCTGCTGCAGCTACTGACTGAGATTCTGCGCTGAAGCAGCTACTGACTGAGATTGCTGAAGCAGCTACTGACTGAGATTCTGCATGCTGAAGCAGCTACTGACTGAGATTCTGCTTTAATGCTGAAGCAGCTACTGACAATGTGGATCAACAAAGGCAGAGTAATGTGGATCAACAAAGGAGAAGTAATGTGGATCAACAAAGGCAGAGAGGTCTGGAAGAAGTAATGCTTGGTCTGGAAGAAGTAATGTGGATCGCTTGGTCTGGAAGAAGTAATTAGCTTGGTCTGGAAGAAGTAATGTAGCTTGGTCTGGAAGAAGTAATGTGGATTAGCTTGGTCTGGAAGAAGTAATTAGCTTGGTCTGGAAGAAAATTAGCTTGGTCTGGAAGAAGTGCTACTGTAGGTGGGGGACAACTGCTACTGTAGGTGGGGGACAATTAGCTGCTGCTACTGTAGGTGGGGGAGCTGCTGCTACTGTAGGTGGGGGACAACAAGCTGCTGCTACTGTAGGTAATGACGGTAGAGTATTATGCAAATGACGGTAGAGTATTATGCATCCAAATGACGGTAGAGTATTATGCACGGAGATCTCCAAATGACGGTAGAGTATTATTGCATCACGGAGATCTCCATTTGCATCACGGAGATCTCCAAATGTTTTTGCATCACGGAGATCATCTAGCATGATTAGGCAATATGATGGATTCTAATGCTGAGGCAATGGATTCTAATGCTGAGGCATCTTGTGATGGATTCTAATGCTGAGGCATCAACTAAGTGTGATGGATTCTAATGCTAAACTAAGTGTGATGGATTCTAATGCTGAGGCAGAAGGCTCTGGGACTGGCCACTGAAGGCTCTGGGACTGGCCACAAACTTCTGAAGGCTCTGGGACTGGCCTATCTGAAGGCTCTGGGACTGGCCACTTTTATCTGAAGGCTCTGGGACGTTTTATCTGAAGGCTCTGGGACTCCGTTTTATCTGAAGGCTCTATTCCGTTTTATCTGAAGGATTCCGTTTTATCTGAAGGCTCATTCCGTTTTATCTGAAGGCTTCATTCCGTTTTATCTGAAGGCTCTGGGAATCATTCCGTTTTATCTGAAGGCATCATTCCGTTTTATCTGAAGGCTCTGGGACTCTTTGGTGGATCATTCCGTTTTATCTGAAGGCTCCAAAGAAGCAGGAGACGTCAGTTGCTACCGGCCATCATGCTTCAGTTGCTACCGGCCATCATGCACTTTGTGTAGTATGAAGGCTCACTACACAAAGAATGGAAAAGACCCCTTGGGATCATCCAAACTGTATGGCGCAACATCCAAACTGTATGGCGCAAGGATGATCTTCAGGCTTATTGGATGATCTTCAGGCTAGTTTGGATGATCTTCAGGCTCAGTTTGGATGATCTTCAGGCTATGGCCTTGCGCCATACAGTTTGGATGTGGTCCTGAATGATGGCCTTGCGCCATTGTGGTCCTGAATGATGGCCTTGCGCCATATCTGTGGTCCTGAATGATGGCCTTGCGCCATCATCTGTGGTCCTGAATGATGGCCTTCATCTGTGGTCCTGAATGATGGCCTCTCATCTGTGGTCCTGAATGATGGCCTCCTCATCTGTGGTCCTGAATGAATCCTCATCTGTGGTCCTGAATGAGTGGATCCTCATCTGTGGTCCTGAATGATGGCCTCTGGTGGATCCTCATCTGTATAAGAGACGTCACTGGTGGATCCTCATCTGATGCATAAGAGACGTCACTTCATGCATAAGAGACGTCACTTCATGCATAAGAGACGTCACTGGTGGATCTAACACAATTGAAGATTTCTTATGTGAGGGATCTATCTACACTCTTTACTGAGGGATCTATCTACACTCATACTGAGGGATCTATCTACACTGCGCATACTGAGGGATCTATCCAAATTGAGCGCATACTGAGCAAATTGAGCGCATACTGAGGTAGGCAAATTGAGCGCATACTGCCGTAGGCAAATTGAGCGCATATGGTTCCCGTAGGCAAATTGAGCGCATCTGGTTCCCGTAGGCAAATTGAGCGCATATTTCTGGTTCCCGTAGGCAAATTGACTATCATTTCTGGTTCCCGTAGGCAAATGACAAGAAAAAACTCCCAGCTTATGACAAGAAAAAACTCCTACTTCGAACAGCTTATGACAAGAAAAAACGGGTCGAACAGCTTATGACAAGACGATCGGTTGGGTCGAACAGCTTGGGCGATCGGTTGGGTCGTGGGCGATCGGTTGGGTCGAACGGATGGGCGATCGGTTGGGTCGAATGTGAGAAAATGCTAAGGATGTTGCATCAGAAGAATGTGAGAAAATGCTATGGTGGCTGCAGAGTCTGCAGTGGATTACCACAGATGGTATGCTTACAGAGTGGATTACCTCGGTCAACACGGTCATCTCAGGGAAATTGCTCGGTCAAAGGGAAATTGCTCGGTCAACTAGGGAAATTGCTCGGTCAAGAGGCTAGGGAAATTGCTCGGTCAGTAGTATCAACAGGAGGCTGCTAGGCAGCCTCCTGTTGATACTACTTGGCAACGATGCTCGTAGGCAGCCTATTCAACTGATGCTCGTAGGCAATTCAACTGATGCTCGTAGGCAGCCTCGATTCAACTGATGCTCGTAGGCAGCCTCTGATTCAACTGATGCTCGTGATTTTGATTCAACTGATGCTCGTAGGCAGCCAGATTTTGATTCAACTGATGTATGGAGTTTTAGATTTTGATTCAACTGACTATGGAGTTTTAGATTTTGATTCATGAGAGACTATGGAGTTTTAGATTTTGATCGTTTGAGAGACTATGGAATTCGTTTGAGAGACTATGGAGTAAAGAATTCGTGCTTTCCTTCGATCTGTTGGAAATTTGCAAAGAAATGGACACAATTCAAACAATGGACACAATTCAAACTCACCATAATGGACACAATTCAAACTCACCTTTATAATGGACACAATTCAAACTCACCCAGAAATTTATAATGGACACAATATGAGAAATTTATAATGGACACAATTCAAACTCTGGGCATGAGAAATTTATAATGGACACAAATGGGCATGAGAAATTTATAATGGACCATGGGCATGAGAAATTTATAATGGAACATGGGCATGAGAAATTTATAATGCAAGACATCATTTACAACATGGGCGAAACACCCTGTCGAACTGCTGTGTTTCGAAGAGGATGGCGACAGGGTGTTTCGAAGAGGATTTCAGCAGTTCGACAGGGTGGATTCAGCAGTTCGACAGGGTGTCAATAACAGGTGAAGATTCAGCAATGACTGATTGTTGACAAACTGAGGTAACTCGTGGAACTTGGTGCTGAGGTAACTCTCTTGGTGCTGAGGTAACTCTCTTGGTGCTGAGGTAACTCGTCTTGGTGCTGAGGTAACTCGTGGAATCTTGGTGCTGAGGTAACTCGTGGAAAATCTCTTGGTGCTGAGGTAACTCTATGATACTCTTGGTGCTGAGGTAACTCGCTTATGATACTCTTGGTGCTGCTTATGATACTCTTGGTGCTAGGACGCTTATGATACTCTTGGTGCTTAAGGACGCTTATGATACTCTTGGTGTTAAGGACGCTTATGATACTCTTGGTGCTGTGTTTTAAGGACGCTTATGATACTGTGTTTTAAGGACGCTTATGATACGTGTTTTAAGGACGCTTATGATACTCTTGGTATGTGTTTTAAGGACGCTTATGATACTTTGTTATAACTTTTTGTTCGGTATGCAACACTTCAAGAGAACGAGGCACTATGGGGAGGTTGTGAAGAAACTTAACAACTCGTGGCTCTGGCTAACAAGAACTCGTGGCTCTGGCTAAGAACTCGTGGCTCTGGCTAACATACCCATTCAAAAGAACTCGTGGCTCTGGAAAGAACTCGTGGCTCTGGCTAACATACAAAGAACTCGTGGCTCTGGCTAACAAAGAACTCGTGGCTCTGGCTAACAGGCAAAGAACTCGTGGCTCTGGCTAACATACCCAGGCAAAGAACTCGTGGCTCTGGCTCCAGGCAAAGAACTCGTGGCTCTGGCTCTCCAGGCAAAGAACTCGTGGCTCTGGCTACTCCAGGCAAAGAACTCGTGGCTTATCCTCAACTCCAGGCAAAGAACTCGTGGCTTCGAGTATCCTCAACTCCAGGCAGCATGAGCCTCTCTGCTTGTACAAGCAGAGAGGCTCATGCTTGATACAAGCAGAGAGGCTCTTGATACAAGCAGAGAGGAATGCTACCTAAAACAAATATGATTGATACAAGGACTTCCTTCAGAGCCTCAGCCGTGACTTCCTTCAGAGCCTCAGACGTGACTTCCTTCAGAGCCTCAGCAAAGAAAAACGTGACTTCCAAAAGAAAAACGTGACTTCGAGAAAAGAAAAACGTGACTATTGGAGAAAAGAAAAACGTGACTTCCTAGGAGGATTGGAGAAAAGAAAAACGATTGAATGTGAATTTTGACTTTAATGACTACATGATGAAATAATGTTCGAAGCTTTAATGACTAGGATAATGTTCGAAGCTTTAATGACTAAGGATAATGTTCGAAGCTAAAGGATAATGTTCGAAGCAAGCCCAAAAGGATAATGTTCCTTGGCGAGGATTGGTCGATATGGTTGAAGAATACCTGCAAACGAGCGTTGAAGAATACCTGCAAGACGAGCGTTGAAGAATACCTGCGACGAGCGTTGAAGAATACCTGCAAGCTGAGGCGACGAGCGTTGAAGAATACCTGCTGCTGAGGCGACGAGCGTTGAAGGTGTTCCCTGCTGAGGCGACGAGCTGAGGATGTGTTCCCTGCTGAGGCGACACAACATTTGAGGATGTGTTCCCTGCTTTATTTTGAATACTCTTAAAAGGTTGTCTGACTGTGTCTTTGGTCCGACTATTCGTGATCTTAAATCTTTCGAGCTCAAGCAACTAGCTCGTGATCTTCTTTCAAATGGGACGTAGCTACCTTGTTATTGTGTTTTGTAAGGGTTTTAGCCTTGAGCTTCTCAAGGCTAAAACCCTGAGGAACGAGAAGCTCAAGGCTAAAACCCTGAGAAGCTCAAGGCTAAAACCCTGATTCGATAACGCTTCCAACTGATCTCTTCCAACTGATCTAAATTTCTCTCCAACTGATCTAAATTTCTCCCAACTGATCTAAATTTCTCTGATCAACTGATCTAAATTTCTCTGATCAACTGATCTAAATTTCTCTGATAGTAACTGATCTAAATTTCTCTGATAAACTGATCTAAATTTCTCTGATAGTACTGATCTAAATTTCTCTGATAGTCTAAATTTCTCTGATAGTGAAAAGATCAGTTGGAAGCGTTATCAGATCAGTTGGAAGCGTTATCGAATTTAGATCAGTTGGAAGCGTTATATTTAGATCAGTTGGAAGCGTTAATTTAGATCAGTTGGAAGCGTTATAATTTAGATCAGTTGGAAGCGTTAGAAATTTAGATCAGTTGGAAGCGTAGAAATTTAGATCAGTTGGAAAGAAATTTAGATCAGTTGGAAGCGGAGAAATTTAGATCAGTTGGAAGCAGAGAAATTTAGATCAGTAGAGAAATTTAGATCAGTTGGAGAGAAATTTAGATCAGTTGGAAGAGAAATTTAGATCAGTTGGAAAGAGAAATTTAGATCAGTTGGAAGCAGAGAAATTTAGATCAGTCAGAGAAATTTAGATCAGTTGGAAATCAGAGAAATTTAGATCAGTTGGATCAGAGAAATTTAGATCAGTTGGAATCAGAGAAATTTAGATCAGTTGGAAGCACTATCAGAGAAATTTAGATCAGTTTTAAGATTAGTTCGATTGATTTTTGAAAGAGGAAGAACCTGAAGAGGAGGAGGAAACTGAGAAGAAGGAGTTCGTCGAAGCTTCTGGAGCAAGCTGCTCTGATCTTCTCCATTCTTCGTCGAAGGGTTGGACTGATCTTCTCCATTGAGATGAGTGGTTGGACTGATCTTCTAAGAGATGAGTGGTTGGACTAAGAGATGAGTGGTTGGACTGATCAAGAGATGAGTGGTTGGACTGATCTTCTCCCCAAGAGATGAGTGGTTGGACCAAGAGATGAGTGGTTGGACTGATCTTCACGACCAAGAGATGAGTGGTTGGACTGATCTAACGACCAAGAGATGAGTGGTTGGACTGATCTTCTCCAAAATCAATGGCGAACGACCAAGAAGTAGCTCGAATCCAAAATCACTACGCAGTCGGGGAAGCAGCAAAGTAGTAGCTCGAATCCAAAATCAATGTAGTAGTAGCTCGAATCCCGACTGCGTAGTAGTAGCCGACTGCGTAGTAGTAGCTCCCGACTGCGTAGTAGTAGCTTTGGATTTACAGAGCATTTTTTTTGCTTAAGATTCTTGTAATGGCTTTGAAAAAGAAACAAAAGGCCGACTGAGGAAGATACAACGACTGAGGAAGATACAAAGCTCGACTGAGGAAGATACAAAGCTCGACTGAGGAAGATACAAAGCAAATCGACTGAGGAAGATACAAAATCGACTGAGGAAGATACAAAGCAATTTATCGACTGAGGAAGATACAATATCGACTGAGGAAGATACAAAGATATCGACTGAGGAAGATACAATATATCGACTGAGGAAGATACATCTATATCGACTGAGGAAGATAATCTATATCGACTGAGGAAGATACAATCTATATCGACTGAGGAAGATACAAAGCAAATCTATATCGACTGAGGAAGAAAATCTATATCGACTGAGGAAGATAATAAATCTATATCGACTGAGGAAGTAGATATAGATAGTTCTCTATTATATCTATAAATCTATATCGACTATCTATATCTATAAATCTATATCGACTGAAAGAAACGACTTCAAGGACTTGAAGTCGTTTCTTGATTCTTCTAAGGACTTGACAGGTTTTTCACTTGAAGTCGTTTCTTGATTGTCCTTGAAGTCGTTTCTTTCAAGTCCTTGAAGTCGTTGAGGATCTGAAAAACCTGTCAClick to see list of reads 17,347,413 - 17,347,622 17,347,770 - 17,347,979 17,348,065 - 17,348,274 17,348,082 - 17,348,291 17,349,448 - 17,349,657 17,349,541 - 17,349,750 17,349,559 - 17,349,768 17,349,898 - 17,350,107 17,350,860 - 17,351,069 17,351,774 - 17,351,983 17,351,820 - 17,352,029 17,352,422 - 17,352,631 17,352,910 - 17,353,119 17,353,569 - 17,353,778 17,354,799 - 17,355,008 17,354,904 - 17,355,113 17,355,431 - 17,355,640 17,355,507 - 17,355,716 17,355,544 - 17,355,753 17,355,557 - 17,355,766 17,355,584 - 17,355,375 17,355,502 - 17,355,293 17,355,498 - 17,355,289 17,355,497 - 17,355,288 17,355,495 - 17,355,286 17,355,254 - 17,355,045 17,354,820 - 17,354,611 17,354,818 - 17,354,609 17,354,810 - 17,354,601 17,353,927 - 17,353,718 17,353,645 - 17,353,436 17,353,437 - 17,353,228 17,353,142 - 17,352,933 17,353,132 - 17,352,923 17,353,131 - 17,352,922 17,352,258 - 17,352,049 17,352,245 - 17,352,036 17,352,103 - 17,351,894 17,351,967 - 17,351,758 17,351,959 - 17,351,750 17,351,953 - 17,351,744 17,351,895 - 17,351,686 17,351,829 - 17,351,620 17,351,630 - 17,351,421 17,351,628 - 17,351,419 17,351,583 - 17,351,374 17,351,530 - 17,351,321 17,351,509 - 17,351,300 17,351,481 - 17,351,272 17,351,478 - 17,351,269 17,351,459 - 17,351,250 17,351,457 - 17,351,248 17,351,454 - 17,351,245 17,351,391 - 17,351,182 17,351,390 - 17,351,181 17,351,261 - 17,351,052 17,351,036 - 17,350,827 17,351,018 - 17,350,809 17,350,674 - 17,350,465 17,350,673 - 17,350,464 17,350,638 - 17,350,429 17,350,361 - 17,350,152 17,349,891 - 17,349,682 17,349,571 - 17,349,362 17,349,570 - 17,349,361 17,349,569 - 17,349,360 17,349,568 - 17,349,359 17,349,567 - 17,349,358 17,349,566 - 17,349,357 17,349,564 - 17,349,355 17,349,560 - 17,349,351 17,349,559 - 17,349,350 17,349,558 - 17,349,349 17,349,554 - 17,349,345 17,349,484 - 17,349,275 17,349,483 - 17,349,274 17,349,481 - 17,349,272 17,349,480 - 17,349,271 17,349,479 - 17,349,270 17,349,477 - 17,349,268 17,349,474 - 17,349,265 17,349,472 - 17,349,263 17,349,471 - 17,349,262 17,349,470 - 17,349,261 17,349,469 - 17,349,260 17,349,468 - 17,349,259 17,349,467 - 17,349,258 17,349,466 - 17,349,257 17,349,465 - 17,349,256 17,349,464 - 17,349,255 17,349,463 - 17,349,254 17,349,462 - 17,349,253 17,349,461 - 17,349,252 17,349,460 - 17,349,251 17,349,459 - 17,349,250 17,349,458 - 17,349,249 17,348,507 - 17,348,298 17,348,102 - 17,347,893 17,347,756 - 17,347,547 17,347,719 - 17,347,510 17,347,573 - 17,347,364 17,346,311 - 17,346,102 Click to see list of phasing windowsClick to see list of phasing windows
Gene map
Phasing analysis map
Phasing Analysis (above): Each dot represents a "window" of ten cycles of small RNAs of length 21 nt (where 21 is set in the control panel under Select phasing analysis options), with the score for the degree of phasing indicated on the Y axis (scores calculated approximately as described by Howell et al., 2007). The red dot is the highest scoring window and has the best score in this region. Other colored dots are windows which are in phase with the highest scoring window -- exactly-in-phase windows appear as filled dots, and almost-in-phase (-1/+1) windows as hollow dots. Only those reads corresponding to the featured length (the default length is 21 nt) are considered.

Gene Chr Strand Gene Type 5' End 3' End Model # of Splice Variants
AT2G41620 2 c protein-coding 17,355,084 17,347,304 1 No splice variant annotated
    Predicted function: unknown function