Arabidopsis small RNA Gene Analysis

The basic information for the gene you have selected is displayed below. The "small RNA Information" section sums the reads that map to either strand of the gene of interest, indicating the total (normalized) read abundance, the count of distinct (different) sequences, and providing links to a downloadable file with that information, and web pages that provide detailed information on the complete set of individual sequences derived from the gene. View a legend that explains the icons and colors in the image below. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.



ATTTATGGTAGATTGGCAATGGACATTTGGCATTATGAGGTTGGCAATTGAAAGACCTCTCCAATGTTCTCTCCAAGATTAGAAACTGCTCTCCAAGATTAGAAACTGCCCAAGATTAGAAACTGCTACATTAGAAACTGCTACGTCTCTTTAGAAACTGCTACGTCTCTCTAGAAACTGCTACGTCTCTCTCAGAAACTGCTACGTCTCTCTAAACTGCTACGTCTCTCTCTAACGTAGCAGTTTCTAATCTTGATAGCTCCCTCGTTTTGCTATTATAGAGAGAGACGTAGCAGTTTTCGTTTTGCTATGTGGTAATTGAGGGAGCTATAGAGAGAGACGTGTTTTTGTTTGTCCGTACCGTTACGGACAAACAAAAACTGTTGGTACGGACAAACAAAAACTGTAAACGGTACGGACAAACAAAAAAGTAAGTAAAACGGTACGGACAAAGAGTAAGTAAAACGGTACGGACAGAGAGTAAGTAAAACGGTACGTGAGAGAGTAAGTAAAACGGTAATAGACAAAGACAGTGAGAGGAGAGTGGTAATAGACAAAGACATTTTTTCCTTCTGTTCTGTTTCTCTTTTCCTTCTGTTCTGTTTCTTTTCCTTCTGTTCTGTTTCTCTTCCTTCTGTTCTGTTTCTCTAGGAAAAAAGAAAGAGACGAGGAGAGAAACAGAACAGAAGGATTAGAGAGAGAAACAGAACAGAAGTTTAGAGAGAGAAACAGAACATCAAAATCAGGGAAGCCGAAAAGAAAATTTCGGCTTCCCTGAAGAAAGGACCAAAGGAGAAGAAGAAAGGACCAAAGGAGAAGAAAGAAAGAAAGGACCAAAGGAGAACGAGACAGTTAGGTTTGTGTGGAGACAGTTAGGTTTGTGTGAGCTCGGGTTTAAAGAAAGGACCTAGGTTTGTGTGAGAGAGAGAATTAGGTTTGTGTGAGAGAGAGAATGATGAGTAGGTTTGTGTGAGAGAGAGAATGATGATTGTGTGAGAGAGAGAATGATGAGTAAAGAGAGAGAATGATGAGTAAAACTCTCTCACACAAACCTAACTGAGAATGATGAGTAAAACCCTTTGTAAAACCCTTTCTGTCTGTAAAACCCTTTCTGTCTGAGCTGTCTGAGTAAGAGGAAACATGACCCGGACCCGAGTTGGGGTCAGGCAGAGTCGGGTGGTTCAGGCAGAGTCGGGTGGTTCCAGGCAGAGTCGGGTGGTTCCTCCACAGGCAGAGTCGGGTGGTTCCTCCACTGGGCAGAGTCGGGTGGTTCCTCGAGGAACCACCCGACTCTGCCTTCTTTCAGTGGAGGGCTCATGCTTTCAGTGGAGGGCTCATGTTCACTGAAAGAGGATGACTCAGTGTTTGGCCAGAAGATCTACTTTTTGGCCAGAAGATCTACTTCGAGGACGCCAGAAGATCTACTTCGAGGACCAGAAGATCTACTTCGAGGACAGAAGATCTACTTCGAGGACGGAGAAGATCTACTTCGAGGACGGTGGAAGATCTACTTCGAGGACGAAGATCTACTTCGAGGACGGGAAGATCTACTTCGAGGACGGTAGATCTACTTCGAGGACGGTGGATCTACTTCGAGGACGGTGGTGGTTCTACTTCGAGGACGGTGGTGACTTCGAGGACGGTGGTGGTGGAAGTAGATCTTCTGGCCAAACCTCGAAGTAGATCTTCTGGCCCTTCCTCAGGTGGTCGTTCAGGTGGTCGTTCAAACAAGGTGGTCGTTCAAACAGACCACGGACACGTCTGTTTGAACGGGTCGGGTCAGTCGGGTCAGAGTCGGGTCAGTCGGGTCAGATAGGTCAGTCGGGTCAGATACCGTCAGTCGGGTCAGATACCAAGGTGCCATCAGTCGGGTCAGATACCAAGGTGCCTCTGACCCGACTGACCCGACCTGCCAAGTGGAAGGTTGTGGGCCAAGTGGAAGGTTGTGGGATGGTTGTGGGATGGATCTAACCAATGGGATGGATCTAACCAATGCAGATGGATCTAACCAATGCAAAAGGTTGCAAAAGGTTATTACTCGAGACACAGGTTATTACTCGAGACACCGAGTAGGTTATTACTCGAGACACCGAGTTTGTCGAGACACCGAGTTTGTGGAGTGCTAAAACACCTAAAGTCACTGTGGCTAACACCTAAAGTCACTGTGGCTGGTATCACCTAAAGTCACTGTGGCTGGTATCCTAAAGTCACTGTGGCTGGTATCCTAAAGTCACTGTGGCTGGTATAAAGTCACTGTGGCTGGTATAAAGTCACTGTGGCTGGTATCAGTCACTGTGGCTGGTATCGAACAGTCACTGTGGCTGGTATCGAACAGAGGACTGTGGCTGGTATCGAACAGAGGTTTCTGTGGCTGGTATCGAACAGACTGTGGCTGGTATCGAACAGAGGTTTGTGGCTGGTATCGAACAGAGCTGGTATCGAACAGAGGTTTTGTCAACTCGAACAGAGGTTTTGTCAACAGTGCGGTTTTGTCAACAGTGCAGCAGTGCACTGTTGACAAAACCTCTGTTCTGCACTGTTGACAAAACCTAGAACCTGCTGCACTGTTGACAAGAACCTGCTGCACTGTTGACAAGGGTAGAACTGGGAAGAAGCTAAAGGGTAGAACTGGGAATGCCATTGCCGGAGATATTCGAGAGATATTCGAGTCCGGCCAAGGCTCTGCTTCTCCGGCAATGGCAAAACATGCCGGACTCGAATATCTCCGGCATGGCCGGACTCGAATATCTCTTGGCCGGACTCGAATATCTCCCTTGGCCGGACTCGAATATCGAGCCTTGGCCGGACTCGAATAACAGTGGAACAAGCAGAGCCTCAACAGTGGAACAAGCAGAGCCCAACAGTGGAACAAGCAGAGCCTGCTTTAGCTTTTTGTGATTGTCAGTGTCTTTAGCTTTTTGTGATTGTCAGCTTTTTGTGATTGTCAGTGTAGTTTTGTAACCTGGTCTTGTGGTCTTGTGTTTGTTGGACTCGTTCCAGGTTACAAAACTAAGCTGTCAACGAGTCCAACAAACACAAGACCTTTGGGAATATGTTTACGTCTACTGTCAATGATGCTATGGTACATTGAGGAACTCTGTTACATTAGGAACTCTGTTACATTATATTACACTGATAGAATGTATACAAACCTTGTCTTTGGAATGTTCTCTTTGGAATGTTCTGTTATGTTGCTAAGTTAACTCAATCTGAATTCTGAATCAATCACATAGGTTCATCAGCTTCCGGAATTTGAAAGCTGATGAAACCTATGTGATTCAAATTCCGGAAGCTGATGAAGGAGTTGCCGCAGGAGACTCCGCTGGTCATAATGAGCGACGAGTCTCCTGCGGCAACTCCTGCTGGTCATAATGAGCGACGATAATGAGCGACGAAGGAAGCCGAAGGAAGCCACAGCCTGCGTCTCTCTCTGAGAGACGCAGGCTGTGGCTTGAGAGAGACGCAGGCTGTGGCCGTTACGGGAGGATCGCAAAAATGGTGATGCTGGAATGAAAAATGGTGATGCTGGAATGAAATGGTGATGCTGGAATGAATGGAAGCTTGGTGATGCTGGAATGAATGGTGATGCTGGAATGAATGGATGGTGATGCTGGAATGAATGGAAGTGATGCTGGAATGAATGGAAGATGCTGGAATGAATGGAAGCTTTCTTGGGAACCTGCTGGAATGAATGGAAGCTTTCTTGGGAACCTTGGGAACCAAGAGATAGGATGGCCAAGGAGATAGGATGGCCAAGTTCAAGAACATTGGATATAGGATGGCCAAGTTCAAGAACATATGGCCAAGTTCAAGAACATGGCCAAGTTCAAGAACATTCAAGTTCAAGAACATTGGATATTCAAGAACATTGGATACAAGGTGATGAGGCGGCCAGTGGACGGTGACGACACTGGCCGCGCAGATCAATCCAATGAATGTGATCTGCCATGACGGTGACGACGATTGATCTGCCATGACGGTGACGTGGATTGATCTGCCATGACGGTGGAGGAGGGACAAGCTTCTCAGGGACAAGCTTCTCATCTAGGGACAAGCTTCTCATCTCCAGAGATTTTCTCATCTCCAGAGATTATGGACTTCTCATCTCCAGAGATTATGGACACTCTCCAGAGATTATGGACACTAAACTTCCAGAGATTATGGACACTAAATCCAGAGATTATGGACACTAAACTAGAGACAGAGATTATGGACACTAAACTAGCAGAGATTATGGACACTAAACTAGAGAAGAGATTATGGACACTAAAAGAGATTATGGACACTAAACTAGAGAGCTGGAGATGAGAAGCTTGTCCCTGGAGATGAGAAGCTTGTCCCTCTGGAGATGAGAAGCTTGTCCCGAGATTATGGACACTAAACTAGAGAGCTATTATGGACACTAAACTAGAGAGCTAAACTAGAGAGCTACAAGGGAATTAAACTAGAGAGCTACAAGGGAATTAAACTAGAGAGCTACAAGGGAATTAACTAGAGAGCTACAAGGGAATAGAGAGCTACAAGGGAATTGTAGAGAGCTACAAGGGAATTGGGCTACAAGGGAATTGGCGACTCAAAGCTACAAGGGAATTGGCGACTCAAACTGTCTACAAGGGAATTGGCGACTCAAACTGTGCCTACAAGGGAATTGGCGACTCAAACTGTGCTTACAAGGGAATTGGCGACTCCAAGGGAATTGGCGACTCCAAGGGAATTGGCGACTCAAACTGCAAGGGAATTGGCGACTCAAACTGTGCTCAAGGGAATTGGCGACTCAAACTGTGCTAGGGAATTGGCGACTCAAACTGTGCTCGGAATTGGCGACTCAAACTGTGCTCTCTCTAATTGGCGACTCAAACTGTGCTCTCGCGACTCAAACTGTGCTCTCTCTAAACTGTGCTCTCTCTCTTCTACAGAAGAGAGAGAGCACGACAGAAGAGAGAGAGCAGACAGAAGAGAGAGAGCACGACAGAAGAGAGAGAGCACATGACAGAAGAGAGAGAGCTGACAGAAGAGAGAGAGCATGACAGAAGAGAGAGAGCACTGACAGAAGAGAGAGAGCACATTGACAGAAGAGAGAGAGTTGACAGAAGAGAGAGAGCTTGACAGAAGAGAGAGAGCATTGACAGAAGAGAGAGAGCACTTGACAGAAGAGAGAGAGCACATTTGACAGAAGAGAGAGAGCACATGTGGATTTGACAGAAGAGAGAGAACAACAACAACAACAACAAACAACAACAACAACAACAACAACAACAACAACAACAACAAACAACAACAACAACAACAACAACAACAACAACAACAACAAACAACAACAACAACAACAACAACAACAACAACAACAACAAACAACAACAACAACAACAACTTGTTGTTGTTGTCATGTGGTTAACAACAACAACAACAACAAACAACAACAACAACAACAACGTTGTTGTTGTTGTTGTCAACAACAACAACAACAACAAACAACAACAACAACAACAACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTGTTGTTGTTGTTGTTGTAACAACAACAACAACAACAAACAACAACAACAACAACAACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTCAACAACAACAACAACAACAATACGTTGTTGTTGTTGTTGTTGTTAACAACAACAACAACAACATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAACAACAACAATACATGGCGAGCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTCAACAACAATACATGGCGAGCTTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTTGTATTGTTGTTGTTGTTGTGCCCGATGACGGTTACAATGGCTCACGATGACGGTTACAATGGCTCCGATGACGGTTACAATGGCTCACGATGACGGTTACAATGGCTCAAGATGACGGTTACAATGGCTCAACCATGACGGTTACAATGGCTCAACCACTGACGGTTACAATGGCTCATGACGGTTACAATGGCTCAAGACGGTTACAATGGCTCAAGACGGTTACAATGGCTCAACCAACGGTTACAATGGCTCAACACGGTTACAATGGCTCAACCACTAGCCAGCATCAGTATCTGAACGCCAGCATCAGTATCTGAACCCAGCATCAGTATCTGAACCCCATCAGTATCTGAACCCGATCAGTATCTGAACCCGCCTTGGGTATTCAAGGAGTATCTGAACCCGCCTTGGGGTATCTGAACCCGCCTTGGGGTATTCAAGGACAATGATAATTTCAAGGACAATGATAATGATAAGGACAATGATAATGATAAGGACAATGATAATGATATGTCTGACAATGATAATGATATGTCTCCTGTCTGTTTTGAATTTAGGTCGATAGAATTTAGGTCGATACACATCTGGCTCGGTGTATCGACCAATTGTCAGATAAGTAGTGGCACGGCAAATTGTCAGATAAGTAGTGGCACGGCAATGATTGTCAGATAAGTAGTGGCAATTGTCAGATAAGTAGTGGCACATTGTCAGATAAGTAGTGGCACGTTGTCAGATAAGTAGTGGCACGTTGTCAGATAAGTAGTGGCACGGTCAGATAAGTAGTGGCACGGCTGACAATTATCTGGCTCGGTGATAAGTAGTGGCACGGCAATGTCTGACAATTATCTGGCTCGGTACGGCAATGGGTGAGTTCGAGTTATCAATGGGTGAGTTCGAGTTATCTGAAGTTCGAGTTATCTGATCACCTAACTCGAACTCACCCATTGCCTCTGATCACCATCATCAAAGTAGATAACTCGAACTCACCCATACCATCATCAAAGTAGGAGACAGTACACATCATCAAAGTAGGAGACAGTACAATCAAAGTAGGAGACAGTAAAAGTAGGAGACAGTACATGGAAGATGAGAACACAAGTAGGAGACAGTACATGGAAGGAGACAGTACATGGAAGATGAGAACACGACAGTACATGGAAGATGAGAACACAAGGGCAGTACATGGAAGATGAGAACACAGGAAGATGAGAACACAAGGGCGAAGATGAGAACACAAGGGCTTGAAGATGAGAACACAAGGGCTTATGACAGATGAGAACACAAGGGCTTGATGAGAACACAAGGGCTGATGAGAACACAAGGGCTTATGACTCTTCTGAACACAAGGGCTTATGACTCTTCAACACAAGGGCTTATGACTAGGGCTTATGACTCTTCTTCTCACCATTCTCACCATACCAACTGGTCTCTCTGACTTATACCAACTGGTCTCTCTGACTTGTACCAACTGGTCTCTCTGACTTACCAACTGGTCTCTCTGACTTTCTCTCTGACTTGTCTTTGCATCTCTCTGACTTGTCTTTGCATCAGACTCTGACTTGTCTTTGCATCAGCTGACTTGTCTTTGCATCAGAGACTGACTTGTCTTTGCATCAGAGAATCTTGACTTGTCTTTGCATCAGAGATTCTCTGATGCAAAGACAAGAGATTCTCTGATGCAAAGACAAGTACAATGAACGATTCTGCAATATCAATGAACGATTCTGCAATATAATGAACGATTCTGCAATATCATGAACGATTCTGCAATATGAACGATTCTGCAATATCTTATCTCAGAATCGTTCATTGTAAGAAGTGCAGAATCGTTCATTGTAAGTTGCAGAATCGTTCATTGTAATTGCAGAATCGTTCATTGTAAGCTTTGTTTATTCTGTTATCTTTATTCTGTTATCTGCTATTGTCTGGTTTATTGATAGCTTTTATCTCCATGAAAATCCAATGAAAATCCAAGTTATGAGAGAGATCAGATTGATTTCTTTAGCACATCTGATCTCATAACTTGGATTGATTATAGATTCATTATATAAACACTTAATTAGACTCAAATTAGACTCAGAGATCTACTCAGAGATCTATCGACAGAGATCTATCGACCAACGAACGAAGTGAACTGCTTTGTGGGTGGTTAGGGTTTTGGGAGGGGAGCTAAATCCATAAAGGACGATGAGAGATCTTTAGGAAGAAAGACTGAATCGCTCTCATCCTTCGCCTTCGCTTCTTCGAATTCCAAAGGAAAGGTTAGACTTTCCTGAATCCTTCAATAGGTTAGACTTTCCTGAATCCTAGATTATATTGAAGATCTGGAAGGTAGAACAGTAGAAGAAGGTAGAACAGTAGAAGAAATCAAGGTAGAACAGTAGAAGAAATCATGGAAGGTAGAACAGTAGAAGAAATCATGGATCCGGTAGAACAGTAGAAGAAATCGGTAGAACAGTAGAAGAAATCATGGGGTAGAACAGTAGAAGAAATCATGGAGTAGAACAGTAGAAGAAATCAAGAACAGTAGAAGAAATCAAGAACAGTAGAAGAAATCATGGATAGAACAGTAGAAGAAATCATGGATCGAACAGTAGAAGAAATCATGGATCCAGCAACAGTAGAAGAAATCATAACAGTAGAAGAAATCATGGATCCAGCTGAACAGTAGAAGAAATCATGGATACAGTAGAAGAAATCATGGATCCAGCTGAACAGTAGAAGAAATCATGGACAGTAGAAGAAATCATGGATCAGTAGAAGAAATCATGGATCCAGTAGAAGAAATCATGGATCCTAGAAGAAATCATGGATCCAGCTGAGAAGAAATCATGGATCCAGAAGAAATCATGGATCCAAGAAATCATGGATCCAGCTGAATCATGGATCCAGCTGAAATATCATGGATCCAGCTGAAATGTCATGGATCCAGCTGAAATGAGATCATGGATCCAGCTGAAATGAGATCATGGATCCAGCTGAAATGAGACATGGATCCAGCTGAAATGAGATAATGGATCCAGCTGAAATGAGATATTATGGATCCAGCTGAAATGAGATATTTGGTGGATCCAGCTGAAATGAGATAGGATCCAGCTGAAATGAGATATTGATCCAGCTGAAATGAGATAATCCAGCTGAAATGAGATATTTGGACAGCTGAAATGAGATATTAGCTGAAATGAGATATTTGGAAGAAGCTGAAATGAGATATTTGGAAGAAATGAGATATTTGGAAGAAGATGAGATATTTGGAAGAAGGATATTTGGAAGAAGAGGATGGATATTTGGAAGAAGAGGATGGTATTTGGAAGAAGAGGATGGTCATTTGGAAGAAGAGGATGGTCCGTTGATGTTTGGAAGAAGAGGATGGTCTTTGGAAGAAGAGGATGGTCCGTTAAGAAGAGGATGGTCCGTTGATGAGAAGAGGATGGTCCGTTGAGAAGAGGATGGTCCGTTGATGAGAAGAGGATGGTCCGTTGATGAAAGAAGAGGATGGTCCGTTGATGAAGAGAAGAGGATGGTCCGTTGATGAAGACAGAAGAGGATGGTCCGTTGATGAAAGAGGATGGTCCGTTGATAGAGGATGGTCCGTTGATGAAAGAGGATGGTCCGTTGATGAAGACAGAGGATGGTCCGTTGATGAAGACAATCGAGGATGGTCCGTTGATGGAGGATGGTCCGTTGATGAAGAGGATGGTCCGTTGATGAAGGAGGATGGTCCGTTGATGAAGACAGAGGATGGTCCGTTGATGAAGACAATGAGGATGGTCCGTTGATGAAGACAATCAGGATGGTCCGTTGATGAAGAAGGATGGTCCGTTGATGAAGACGGATGGTCCGTTGATGAAGGGATGGTCCGTTGATGAAGACAATCGATGGTCCGTTGATGAAGGATGGTCCGTTGATGAAGACGATGGTCCGTTGATGAAGACAAGATGGTCCGTTGATGAAGACAATCATGGTCCGTTGATGAAGACATGGTCCGTTGATGAAGACAATCATGGTCCGTTGATGAAGACAATCAAAGGGATGAAGACAATCAAAGGTAGTAATGAAGACAATCAAAGGTAGTATGAAGACAATCAAAGGTAGTATCACTGGTTCTTCATCAACGGACCATCCTCGACAATCAAAGGTAGTATCACTGGCAATCAAAGGTAGTATCACTGAATCAAAGGTAGTATCACTGGTTCAAAGGTAGTATCACTGGTTTTGGGTAGTATCACTGGTTTTGGTAGTATCACTGGTTTTGGTGCTGTATCACTGGTTTTGGTGCTGGGACTTATCACTGGTTTTGGTGCTGGGACTTCACTGGTTTTGGTGCTGTCACTGGTTTTGGTGCTGGGACTCTGGTTTTGGTGCTGGGACTGGTTTTGGTGCTGGGACTGTTTTGGTGCTGGGACTATTTACTTTTGGTGCTGGGACTATTTACTTTTGGTGCTGGGACTATTTACGTTTGGTGCTGGGACTATTTACGGATTTGGTGCTGGGACTATTTACGGAATTGGTGCTGGGACTATTTACGGAATTGGTGCTGGGACTATTTACGGAACCTGGTGCTGGGACTATTTACGGAACCATTTGGTGCTGGGACTATTTACGGAACCGTGCTGGGACTATTTACGGAACCTGCTGGGACTATTTACGGAACCGCTGGGACTATTTACGGAACCCTGGGACTATTTACGGAACCCTGGGACTATTTACGGAACCATGGGACTATTTACGGAACCATTACTATTTACGGAACCATTTTAGCCACATTTACGGAACCATTTTAGCCTTACGGAACCATTTTAGCCACTTACGGAACCATTTTAGCCACATTACGGAACCATTTTAGCCACATGTTTAGCCACATGGAAAGATGTTCCAAGCACATGGAAAGATGTTCCAAGAGTGGGAAAGATGTTCCAAGAGTGGAGAGATGTTCCAAGAGTGGAGAGAAATTCCAAGAGTGGAGAGAAATGTGGCTCAAGAGTGGAGAGAAATGTGGCTCAAGAGTGGAGAGAAATGTGGCTCTTCCAGGACTAGAGTGGAGAGAAATGTGGCTCAGAGAAATGTGGCTCTTCCGAGAAATGTGGCTCTTCCAGGACTTAAAATGTGGCTCTTCCAGGACTTATTAAATGTGGCTCTTCCAGGACTAATGTGGCTCTTCCAGGACTTATGTGGCTCTTCCAGGACTTATGTGGCTCTTCCAGGACTTATTAGAACGTGGCTCTTCCAGGACTTATTAGAGTGGCTCTTCCAGGACTTATTAGAAGGCTCTTCCAGGACTTATTAGAACACTCTTCCAGGACTTATTAGAACATCTTCCAGGACTTATTAGAACACTCTTCCAGGACTTATTAGAACACTCTTCCAGGACTTATTAGACTTCCAGGACTTATTAGAACACTTTCCAGGACTTATTAGAATTCCAGGACTTATTAGAACTTCCAGGACTTATTAGAACATTCCAGGACTTATTAGAACACTTCCAGGACTTATTAGAACACTTTCCAGGACTTATTAGAACACTGATTCCAGGACTTATTAGAACACTGAATCCAGGACTTATTAGAACTCCAGGACTTATTAGAACACTCCAGGACTTATTAGAACACTTCCAGGACTTATTAGAACACTGTCCAGGACTTATTAGAACACTGAAGACCAGGACTTATTAGAACACTGAAGATGATGGGACAGGACTTATTAGAACACTCAGGACTTATTAGAACACTGAAAGGACTTATTAGAACACTAGGACTTATTAGAACACTGAAGATGAGGACTTATTAGAACACTGAAGATGATGGACTTATTAGAACACTGAAGACTTATTAGAACACTGAAGATACTTATTAGAACACTGAAGATGAACTTATTAGAACACTGAAGATGATACTTATTAGAACACTGAAGATGATGGCTTATTAGAACACTGAAGATGATGGCTTATTAGAACACTGAAGATGATGGGACTTATTAGAACACTGAAGATGATGGGAACCTTATTAGAACACTGAAGATTATTAGAACACTGAAGATGATTATTAGAACACTGAAGATGATGGGAACCCTATTAGAACACTGAAGATGTATTAGAACACTGAAGATGATATTAGAACACTGAAGATGATGTATTAGAACACTGAAGATGATGGGAACCTATTAGAACACTGAAGATGATGGGAACCCTATTAGAACACTGAAGATGATGGGAACCCATATTAGAACACTGAAGATGAATTAGAACACTGAAGATGATGGATTAGAACACTGAAGATGATGGGATTAGAACACTGAAGATGATGGGAATTAGAACACTGAAGATGATTAGAACACTGAAGATGATGGGATTAGAACACTGAAGATGATGGGAATTAGAACACTGAAGATGATGGGAACCCTAGAACACTGAAGATGATGTAGAACACTGAAGATGATGGGTAGAACACTGAAGATGATGGGAACCAGAACACTGAAGATGATGGGGAACACTGAAGATGATGGGAACGAACACTGAAGATGATGGGAACCGAACACTGAAGATGATGGGAACCCATAACACTGAAGATGATGGGAACCCAACACTGAAGATGATGGGAACCCATACACTGAAGATGATGGGAACACACTGAAGATGATGGGAACCCACACTGAAGATGATGGGAACCCATACACTGAAGATGATGGGAACCCATGGGCTGCACTGAAGATGATGGGAACCCACTGAAGATGATGGGAACCCCACTGAAGATGATGGGAACCCAACTGAAGATGATGGGAACCACTGAAGATGATGGGAACCCCTGAAGATGATGGGAACCCTGAAGATGATGGGAACCCAGATGATGGGAACCCATGGAGATGATGGGAACCCATGGGCAGATGATGGGAACCCATGGGCTGACTAGATGATGGGAACCCATGGGCTGACTTATGATGGGAACCCATGGGCTGACTGATGGGAACCCATGGGCTGACTTTTGCTGCTATATGGGAACCCATGGGCTGATGGGAACCCATGGGCTGAATGGGAACCCATGGGCTGACTTGGGAACCCATGGGCTGATGGGAACCCATGGGCTGACTTGGGAACCCATGGGCTGACTTTTGCTCCATGGGCTGACTTTTGCTGCTACCATGGGCTGACTTTTGCTGCTATAGGAGGTGACTTTTGCTGCTATAGGAGTGTTTACATCGGTGTTGAACAGCGTGTTTACATCGGTGTTGAACAGCTGTGTTTACATCGGTGTTGAACAGCTGGTTCAGATGTTTACATCGGTGTTGATGTTTACATCGGTGTTGAACAGCTGGTTGTTTACATCGGTGTTGAACGTTTACATCGGTGTTGAACAGTTTACATCGGTGTTGAACAGCGTTTACATCGGTGTTGAACAGCTTTTACATCGGTGTTGAACAGCTTTACATCGGTGTTGAACAGCTTTACATCGGTGTTGAACAGCTGGTTCAGATACATCGGTGTTGAACAGCTACATCGGTGTTGAACAGCTTACATCGGTGTTGAACAGCTGGTTCAGAACATCGGTGTTGAACAGCTGACATCGGTGTTGAACAGCTGGTTCAGAACATCGGTGTTGAACAGCTGGTTCTCGGTGTTGAACAGCTGGTTCTCGGTGTTGAACAGCTGGTTCAGAAACAGCTGGTTCAGAATTTTAGAAACAGCTGGTTCAGAATTTTAGATCCAAGAACAGCTGGTTCAGAATTTTAGATCCAGCTGGTTCAGAATTTTAGCAGCTGGTTCAGAATTTTAGATCCAGCTGGTTCAGAATTTTAGATCCTGGTTCAGAATTTTAGATCATTTTAGATCCAAGAGAGATTTTAGATCCAAGAGAGATTCTTGGATCTAAAATTCTGAACTACAATGGTGCTATTGGTGGTTTTAATGGTGCTATTGGTGGTTGCTATTGGTGGTTTTGTCGCTGGAGCGCTATTGGTGGTTTTGTCGCTGGAGCATTGGTGGTTTTGTCGCTGGAGCTTTGGTGGTTTTGTCGCTGGAGCTTCTGTGCTTGGTTGTCGCTGGAGCTTCTGTGCTTGGCTATACGCTGGAGCTTCTGTGCTTGGCCTGGAGCTTCTGTGCTTGCTGGAGCTTCTGTGCTTGGCCTGGAGCTTCTGTGCTTGGCTTAGCCAAGCACAGAAGCTCCAAGAACTGATGTGATTTTGGTGClick to see list of reads 17,587,244 - 17,587,453 17,587,278 - 17,587,487 17,587,286 - 17,587,495 17,587,287 - 17,587,496 17,587,291 - 17,587,500 17,587,311 - 17,587,520 17,587,320 - 17,587,529 17,587,355 - 17,587,564 17,587,428 - 17,587,637 17,587,429 - 17,587,638 17,587,467 - 17,587,676 17,587,528 - 17,587,737 17,587,640 - 17,587,849 17,587,645 - 17,587,854 17,587,679 - 17,587,888 17,587,705 - 17,587,914 17,587,708 - 17,587,917 17,587,713 - 17,587,922 17,587,716 - 17,587,925 17,587,791 - 17,588,000 17,587,820 - 17,588,029 17,587,908 - 17,588,117 17,587,909 - 17,588,118 17,587,910 - 17,588,119 17,587,917 - 17,588,126 17,588,093 - 17,588,302 17,588,174 - 17,588,383 17,588,418 - 17,588,627 17,588,610 - 17,588,819 17,588,641 - 17,588,850 17,588,662 - 17,588,871 17,588,670 - 17,588,879 17,588,830 - 17,589,039 17,588,836 - 17,589,045 17,588,881 - 17,589,090 17,588,886 - 17,589,095 17,588,890 - 17,589,099 17,589,030 - 17,589,239 17,589,033 - 17,589,242 17,589,061 - 17,589,270 17,589,177 - 17,589,386 17,589,182 - 17,589,391 17,589,225 - 17,589,434 17,589,248 - 17,589,457 17,589,312 - 17,589,521 17,589,316 - 17,589,525 17,589,320 - 17,589,529 17,589,345 - 17,589,554 17,589,356 - 17,589,565 17,589,391 - 17,589,600 17,589,433 - 17,589,642 17,589,449 - 17,589,658 17,589,480 - 17,589,689 17,589,481 - 17,589,690 17,589,593 - 17,589,802 17,589,603 - 17,589,812 17,590,453 - 17,590,662 17,590,621 - 17,590,830 17,590,622 - 17,590,831 17,590,627 - 17,590,836 17,590,635 - 17,590,844 17,590,639 - 17,590,848 17,590,655 - 17,590,864 17,590,661 - 17,590,870 17,590,664 - 17,590,873 17,590,674 - 17,590,883 17,590,675 - 17,590,884 17,590,676 - 17,590,885 17,590,690 - 17,590,899 17,590,697 - 17,590,906 17,590,726 - 17,590,935 17,590,727 - 17,590,936 17,590,737 - 17,590,946 17,590,786 - 17,590,995 17,590,796 - 17,591,005 17,590,797 - 17,591,006 17,590,803 - 17,591,012 17,590,805 - 17,591,014 17,590,809 - 17,591,018 17,590,814 - 17,591,023 17,590,820 - 17,591,029 17,590,825 - 17,591,034 17,590,826 - 17,591,035 17,590,866 - 17,591,075 17,590,871 - 17,591,080 17,590,946 - 17,591,155 17,591,055 - 17,591,264 17,590,967 - 17,590,758 17,590,695 - 17,590,486 17,589,846 - 17,589,637 17,589,629 - 17,589,420 17,589,556 - 17,589,347 17,589,497 - 17,589,288 17,589,496 - 17,589,287 17,589,472 - 17,589,263 17,589,358 - 17,589,149 17,589,318 - 17,589,109 17,589,310 - 17,589,101 17,589,086 - 17,588,877 17,589,085 - 17,588,876 17,589,013 - 17,588,804 17,588,940 - 17,588,731 17,588,708 - 17,588,499 17,588,706 - 17,588,497 17,588,661 - 17,588,452 17,588,630 - 17,588,421 17,588,069 - 17,587,860 17,588,051 - 17,587,842 17,587,991 - 17,587,782 17,587,964 - 17,587,755 17,587,811 - 17,587,602 17,587,723 - 17,587,514 17,587,688 - 17,587,479 17,587,634 - 17,587,425 17,587,531 - 17,587,322 17,587,522 - 17,587,313 17,587,520 - 17,587,311 17,587,493 - 17,587,284 17,587,456 - 17,587,247 17,587,450 - 17,587,241 17,587,433 - 17,587,224 17,587,406 - 17,587,197 17,587,389 - 17,587,180 17,587,371 - 17,587,162 17,587,302 - 17,587,093 Click to see list of phasing windowsClick to see list of phasing windows
Gene map
Phasing analysis map
Phasing Analysis (above): Each dot represents a "window" of ten cycles of small RNAs of length 21 nt (where 21 is set in the control panel under Select phasing analysis options), with the score for the degree of phasing indicated on the Y axis (scores calculated approximately as described by Howell et al., 2007). The red dot is the highest scoring window and has the best score in this region. Other colored dots are windows which are in phase with the highest scoring window -- exactly-in-phase windows appear as filled dots, and almost-in-phase (-1/+1) windows as hollow dots. Only those reads corresponding to the featured length (the default length is 21 nt) are considered.

Gene Chr Strand Gene Type 5' End 3' End Model # of Splice Variants
AT2G42200 2 w protein-coding 17,587,407 17,589,630 1 No splice variant annotated
    Predicted function: unknown function