Arabidopsis small RNA Gene Analysis

The basic information for the gene you have selected is displayed below. The "small RNA Information" section sums the reads that map to either strand of the gene of interest, indicating the total (normalized) read abundance, the count of distinct (different) sequences, and providing links to a downloadable file with that information, and web pages that provide detailed information on the complete set of individual sequences derived from the gene. View a legend that explains the icons and colors in the image below. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.



GAAAGGAGAAAGAAAATGGGATTACAAAAATAAAGATGGAATAATTTGGTCAAATCGTCGCAAAGCCGTCAAATCGTCGCAAAGCCAAAAACTGATAGGGTATGGACTACTTCAAGATTTTCAACGTAAACATTATTTTGTCTTGTATAGCTTTGGCAGAGAGTAAGTAAGTGGAGAGTTTTTTTCTCTTCTTAAAAACCTCACTTATCCTTCTCATCATTCTACTTATCCTTCTCATCATTCTAGGATAAGTGAAGAAGAGGTTAGGATAAGTGAAGAAGAGGTTTAAGGATAAGTGAAGAAGAGGTAGAAGGATAAGTGAAGAAGAGAGAAGGATAAGTGAAGAAGAGGAGAAGGATAAGTGAAGAAGAGGTTATCATTCTCTTCATCATCACCACATGAGAAGGATAAGTGAAGAAGAGTGAGAAGGATAAGTGAAGAAGAGGATGAGAAGGATAAGTGAAGAAGAGGATGAGAAGGATAAGTGAAGAAGATGAGAAGGATAAGTGAAGAAGAATTCTCTTCATCATCACCACAATGATGAGAAGGATAAGTATGATGAGAAGGATAAGTGAAAATGATGAGAAGGATAAGTGAATGATGAGAAGGATAAGTGAAATGATGAGAAGGATAAGTGAAAGAATGATGAGAAGGATAAGTGGAGAATGATGAGAAGGATAAGAGAGAATGATGAGAAGGATAAAGAGAATGATGAGAAGGATAAGAAGAGAATGATGAGAAGGATAGAAGAGAATGATGAGAAGGATGAAGAGAATGATGAGAAGGATATGAAGAGAATGATGAGAAGGATGAAGAGAATGATGAGAAGGATATGAAGAGAATGATGAGAAGGAATGAAGAGAATGATGAGAAGGATTCATCACCACATTCATCTCTCCATCACCACATTCATCTCTCTCTCTATCACCACATTCATCTCTCTCTGATGAAGAGAATGATGAGAATGATGAAGAGAATGATGAGAAGGATGATGAAGAGAATGATGGATGATGAAGAGAATGATGAGAAGGATGATGATGAAGAGAATGATGTGATGATGAAGAGAATGATGATGATGATGAAGAGAATGATGAGTGATGATGAAGAGAATGATGAGAGTGATGATGAAGAGAATGATGGTGATGATGAAGAGAATGATGAGAACACATTCATCTCTCTCTCTCTACATTCATCTCTCTCTCTCTCTGGTGATGATGAAGAGAATGATGGTGATGATGAAGAGAATGATGATTCATCTCTCTCTCTCTCTCTGTGGTGATGATGAAGAGAATTGTGGTGATGATGAAGAGAATGTCATCTCTCTCTCTCTCTCTCTCTCATCTCTCTCTCTCTCTCTCTCTCATCTCTCTCTCTCTCTCCATCTCTCTCTCTCTCTCTCTCCATCTCTCTCTCTCTCTCTCTCTGAATGTGGTGATGATGAAGAGAATGATCTCTCTCTCTCTCTCTCTCATCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTTGAATGTGGTGATGATGAAGATGAATGTGGTGATGATGAAGAGTGAATGTGGTGATGATGAAGAGAAATGAATGTGGTGATGATGAAGAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATGAATGTGGTGATGATGAGATGAATGTGGTGATGATGAAAGATGAATGTGGTGATGATGAAGATGAATGTGGTGATGATGAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGATGAATGTGGTGATGATAGAGATGAATGTGGTGATGATGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTAGAGAGATGAATGTGGTGATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTGAGAGAGATGAATGTGGTGATAGAGAGAGATGAATGTGGTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTTTCTGAGAGAGAGATGAATGTGGTGGAGAGAGAGATGAATGTGGTGAAGAGAGAGAGATGAATGTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTTTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTTCTCCTCTCTCTCTCTCTCTCTTTCTCTGAGAGAGAGAGATGAATGGAGAGAGAGAGATGAATGTGAGAGAGAGAGATGAATGTGGGAGAGAGAGAGATGAATGTGGTAGAGAGAGAGAGATGAATGAGAGAGAGAGAGATGAATGTGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTTCTCTCTCTCTCTCTCTTTCTCTTGAGAGAGAGAGAGATGAATGTGAGAGAGAGAGAGAGATGAATGCTCTCTCTCTCTCTTTCTCTGAGAGAGAGAGAGAGATGAATGCTCTCTCTCTCTTTCTCTTCCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGAGAGAGAGAGAGAGAGATGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGATGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGAGAGAGAGAGAGAGAGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGATTCTCTTCCTTGATCTTAGCCAAAGAGAGAGAGAGAGAGAGAAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGATCTCTTCCTTGATCTTAGCCGGCTCTTCCTTGATCTTAGCCTCTTCCTTGATCTTAGCCGGGAAAGAGAGAGAGAGAGAGAGGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGAAAGAGAGAGAGAGAGAGAGAGAAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAGAAAGAGAGAGAGAGAGAGAGAGTCTTCCTTGATCTTAGCCGGATCTTCCTTGATCTTAGCCGGATCTTCCTTGATCTTAGCCGGACTTCCTTGATCTTAGCCGGATCTTCCTTGATCTTAGCCGGATCGAGAAAGAGAGAGAGAGAGAGGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAGAGAAAGAGAGAGAGAGAGAGAGTTCCTTGATCTTAGCCGGATCTTCCTTGATCTTAGCCGGATCTTCCTTGATCTTAGCCGGATCTCCTTGATCTTAGCCGGATCTTCCTTGATCTTAGCCGGATCTGCCTTGATCTTAGCCGGATCTCCTTGATCTTAGCCGGATCTGCCTTGATCTTAGCCGGATCTGTGAAGAGAAAGAGAGAGAGAGAGCTTGATCTTAGCCGGATCTGTAGGAAGAGAAAGAGAGAGAGAGTTGATCTTAGCCGGATCTGTTTTGATCTTAGCCGGATCTGTTGTTGATCTTAGCCGGATCTGTTGGGAAGGAAGAGAAAGAGAGAGAGAAGGAAGAGAAAGAGAGAGAGATGATCTTAGCCGGATCTGTTGTGATCTTAGCCGGATCTGTTGGTGATCTTAGCCGGATCTGTTGGGCAAGGAAGAGAAAGAGAGAGACAAGGAAGAGAAAGAGAGAGAGGATCTTAGCCGGATCTGTTGGGATCTTAGCCGGATCTGTTGGGATCTTAGCCGGATCTGTTGGGATCTTAGCCGGATCTGTTGGGGTCAAGGAAGAGAAAGAGAGAGTCTTAGCCGGATCTGTTGGGGTCTTAGCCGGATCTGTTGGGGGTCTTAGCCGGATCTGTTGGGGGATCTTAGCCGGATCTGTTGGGGGACCTTAGCCGGATCTGTTGGGGCTTAGCCGGATCTGTTGGGGGCTTAGCCGGATCTGTTGGGGGAGATCAAGGAAGAGAAAGAGAGTTAGCCGGATCTGTTGGGGTTAGCCGGATCTGTTGGGGGTTAGCCGGATCTGTTGGGGGATTAGCCGGATCTGTTGGGGGACTTAGCCGGATCTGTTGGGGGACGATAGCCGGATCTGTTGGGGGACTAGCCGGATCTGTTGGGGGACGTAGCCGGATCTGTTGGGGGACGATAGCCGGATCTGTTGGGGGACGAAAGCCGGATCTGTTGGGGGAAGCCGGATCTGTTGGGGGACAGCCGGATCTGTTGGGGGACGAGCCGGATCTGTTGGGGGACGATAAGATCAAGGAAGAGAAAGATAAGATCAAGGAAGAGAAAGAGCTAAGATCAAGGAAGAGAAAGGCCGGATCTGTTGGGGGACGAGCCGGATCTGTTGGGGGACGAAGCCGGATCTGTTGGGGGACGAACGCCGGATCTGTTGGGGGACGAACACCGGATCTGTTGGGGGACGACCGGATCTGTTGGGGGACGAACCGGATCTGTTGGGGGACGAACCGGATCTGTTGGGGGACGACGGATCTGTTGGGGGACGAACCGGATCTGTTGGGGGACGAACAGGCTAAGATCAAGGAAGAGAAGGCTAAGATCAAGGAAGAGAAACGGCTAAGATCAAGGAAGCGGCTAAGATCAAGGAAGAGCGGCTAAGATCAAGGAAGAGACGGCTAAGATCAAGGAAGAGAAGGATCTGTTGGGGGACGAAGGATCTGTTGGGGGACGAACACCCGGCTAAGATCAAGGAAGAGCCGGCTAAGATCAAGGAAGAGAGATCTGTTGGGGGACGAACACAATCTGTTGGGGGACGAACACAATCTGTTGGGGGACGAACACATTCCGGCTAAGATCAAGGAAGATCCGGCTAAGATCAAGGAAGAGATCCGGCTAAGATCAAGGAAGATCCGGCTAAGATCAAGGAAGATCTGTTGGGGGACGAACACATTCTGTTGGGGGACGAACACATGCTGTTGGGGGACGAACACATGGATCCGGCTAAGATCAAGGAGATCCGGCTAAGATCAAGGAAGATCCGGCTAAGATCAAGGAAGAGATCCGGCTAAGATCAAGGAAGATCCGGCTAAGATCAAGGAATGTTGGGGGACGAACACATGTTGGGGGACGAACACATGAGCAGATCCGGCTAAGATCAAGGCAGATCCGGCTAAGATCAAGGACAGATCCGGCTAAGATCAAGGAAGGTTGGGGGACGAACACATGAGGTTGGGGGACGAACACATGAGAGTTGGGGGACGAACACATGAGAGAACAGATCCGGCTAAGATCAAACAGATCCGGCTAAGATCAAGACAGATCCGGCTAAGATCAAGGACAGATCCGGCTAAGATCAAGGATTGGGGGACGAACACATGAGATTGGGGGACGAACACATGAGAGAACAGATCCGGCTAAGATCAAAACAGATCCGGCTAAGATCAAGAACAGATCCGGCTAAGATCAAGGTGGGGGACGAACACATGAGATGGGGGACGAACACATGAGAGTGGGGGACGAACACATGAGAGACAACAGATCCGGCTAAGACAACAGATCCGGCTAAGATCAACAGATCCGGCTAAGATCCAACAGATCCGGCTAAGATCACAACAGATCCGGCTAAGATCAACAACAGATCCGGCTAAGATCAAGGGGGGACGAACACATGAGAGGGGGGACGAACACATGAGAGAGGGGGACGAACACATGAGAGATCCAACAGATCCGGCTAAGATCCCAACAGATCCGGCTAAGATCACCAACAGATCCGGCTAAGATCAAGGGGACGAACACATGAGAGATGGGGACGAACACATGAGAGATACCCAACAGATCCGGCTAAGACCCAACAGATCCGGCTAAGATCCCAACAGATCCGGCTAAGATCGGGACGAACACATGAGAGATAGCCCCAACAGATCCGGCTAAGCCCCAACAGATCCGGCTAAGATCCCCAACAGATCCGGCTAAGATCGGACGAACACATGAGAGATAGAGGACGAACACATGAGAGATAGATACCCCCAACAGATCCGGCTAAGACGAACACATGAGAGATAGATACGAACACATGAGAGATAGATACGAACACATGAGAGATAGATATCCCCCAACAGATCCGGCTAAGTCCCCCAACAGATCCGGCTAGTCCCCCAACAGATCCGGCTAACGTCCCCCAACAGATCCGGCTCGTCCCCCAACAGATCCGGCTATCGTCCCCCAACAGATCCGTCGTCCCCCAACAGATCCGGCTCGTCCCCCAACAGATCCGGCTTTCGTCCCCCAACAGATCCGGTTCGTCCCCCAACAGATCCGGCGTTCGTCCCCCAACAGATCCGGTGTTCGTCCCCCAACAGATCCTGTGTTCGTCCCCCAACAGATTGTGTTCGTCCCCCAACAGATCATGTGTTCGTCCCCCAACAGACATGTGTTCGTCCCCCAACAGCATGTGTTCGTCCCCCAACAGATCTCATGTGTTCGTCCCCCAACTCTCATGTGTTCGTCCCCCACTCTCATGTGTTCGTCCCCCAATCTCTCATGTGTTCGTCCCCCAATCTCTCATGTGTTCGTCCCCTATCTCTCATGTGTTCGTCCCTATCTCTCATGTGTTCGTCCCCCTATCTCTCATGTGTTCGTCCCTCTATCTCTCATGTGTTCGTTCTATCTCTCATGTGTTCGTCTCTATCTCTCATGTGTTCGTCCATCTATCTCTCATGTGTTCGTTATCTATCTCTCATGTGTTCGTATATTTTATCTATCTCTAAATTTCTCGAAAAAACCTTCTTATATTTTATCTATCTCTTCTTATATTTTATCTATCTCTTTCTCGAAAAAACCTAATAGGAAAAAACCTAATAGAAAAAGGTCTGTTTAAAAACCTAATAGAAAAAGGTCACCTAATAGAAAAAGGTCTGTACCTAATAGAAAAAGGTCTGTTCCTAATAGAAAAAGGTCTGTTCTAATAGAAAAAGGTCTGTTTCTAATAGAAAAAGGTCTGTTTCTAATAGAAAAAGGTCTGTTTCAATAGAAAAAGGTCTGTTTCTATAGAAAAAGGTCTGTTTCTTATTAGGTTTTTTCGAGAAATTTAGAAAAAGGTCTGTTTCTAGAAAAAGGTCTGTTTCTTAGAAAAAGGTCTGTTTCTTTAGAAAAAGGTCTGTTTCTTATAGAAAAAGGTCTGTTTCTTAAAGAAAAAGGTCTGTTTCTTAAAAAAAGGTCTGTTTCTTAAAAAAAAGGTCTGTTTCTTAAAGAAAAAGGTCTGTTTCTTAAAGAAAAAGGTCTGTTTCTTAAAAAAGGTCTGTTTCTTAAAGAAAAGGTCTGTTTCTTAAAGAAAAAGGTCTGTTTCTTAAAGAAAAAGGTCTGTTTCTTAAAGAAAAGGTCTGTTTCTTAAAGAAAAAGGTCTGTTTCTTAAAGAAGAAAGGTCTGTTTCTTAAAGAAGATTTCTATTAGGTTTTTTCGAGTTTCTATTAGGTTTTTTCGAGAAAGGTCTGTTTCTTAAAGAAAAGGTCTGTTTCTTAAAGAAGAAGGTCTGTTTCTTAAAGAAGAAAGGTCTGTTTCTTAAAGAAGAAGAGGTCTGTTTCTTAAAGAAGAGGTCTGTTTCTTAAAGAAGAAGGTCTGTTTCTTAAAGAAGAAGATCTGTTTCTTAAAGAAGAAGAACTGTTTCTTAAAGAAGAAGAAGAAGAGGATAGAAACAGACCTTTTTCTATTTAAAGAAGAAGAAGAAGAGGATTAAGAAACAGACCTTTTTCTTAAGAAACAGACCTTTTTCTAAAGAAGAAGAAGAAGAGGATTTTTAAGAAACAGACCTTTTTCTAAGAAGAAGAAGAAGAGGATTTTTTAAGAAACAGACCTTTTTCTTTAAGAAACAGACCTTTTTCTAGAAGAAGAAGAGGATTTAAAAGAAGAAGAAGAGGATTTAAAGAGAAGAAGAAGAGGATTTAAAGAGAAGAAGAGGATTTAAAGAGTTCTTCTTTAAGAAACAGACCAGAAGAGGATTTAAAGAGGGAGAAGAGGATTTAAAGAGGGATAAGAGGATTTAAAGAGGGATAAGAGGATTTAAAGAGGGATTAAGAGGATTTAAAGAGGGATTTTTAGAGGATTTAAAGAGGGATAGAGGATTTAAAGAGGGATTTTTCAGAGGATTTAAAGAGGGATTTTTCTTTTGAGGGAGGATTTAAAGAGGGATTAGGATTTAAAGAGGGATTTTTAGGATTTAAAGAGGGATTTTTCTTTTGAGGGGGATTTAAAGAGGGATTTTTCTTTTGAGGTTTAAAGAGGGATTTTTCTTTTGAGGTTAAAGAGGGATTTTTCTTTTGAGGTAAAGAGGGATTTTTCTTTTGAAAAGAGGGATTTTTCTTTTGAGGTAAATCCTCTTCTTCTTCTTCAAGAGGGATTTTTCTTTTGAGGTTTAAATCCTCTTCTTCTTCTGAGGGATTTTTCTTTTGAGGGTTTTTCTTTTGAGGGGACTGTTTCTTTTGAGGGGACTGTTGTCTGGCTCTTTTGAGGGGACTGTTGTCTGGCTTTTTGAGGGGACTGTTGTCTGGCTTTTGAGGGGACTGTTGTCTTTGAGGGGACTGTTGTCTGGTTTGAGGGGACTGTTGTCTGGCTTTGAGGGGACTGTTGTCTGGCTTTTGAGGGGACTGTTGTCTGGCTCTTGAGGGGACTGTTGTCTGGCTTTGAGGGGACTGTTGTCTGGCTCTGAGGGGACTGTTGTCTGGCTGAGGGGACTGTTGTCTGGCTTGAGGGGACTGTTGTCTGGCTCGAGGGGACTGTTGTCTGGCTGAGGGGACTGTTGTCTGGCTCGAGGGGACTGTTGTCTGGCTCGAGGAGGGGACTGTTGTCTGGCTCGAGGACGAGGGGACTGTTGTCTGGCTCGAGGACTAGGGGACTGTTGTCTGGCAGGGGACTGTTGTCTGGCTAGGGGACTGTTGTCTGGCTCAGGGGACTGTTGTCTGGCTCGAGGGGACTGTTGTCTGGCTCGAGAGGGGACTGTTGTCTGGCTCGAGGCTCAAAAGAAAAATCCCTCTTGGGGACTGTTGTCTGGCTGGGGACTGTTGTCTGGCTCGGGGACTGTTGTCTGGCTCGGGGGACTGTTGTCTGGCTCGAGGGGACTGTTGTCTGGCTCGAGGGGGACTGTTGTCTGGCTCGAGGGGGGACTGTTGTCTGGCTCGAGGAGGGGACTGTTGTCTGGCTCGAGGACGGGGACTGTTGTCTGGCTCGAGGACTGGGGACTGTTGTCTGGCTCGAGGACTCTGGGACTGTTGTCTGGCTCGGGACTGTTGTCTGGCTCGAGGGACTGTTGTCTGGCTCGAGGGGACTGTTGTCTGGCTCGAGGGGGACTGTTGTCTGGCTCGAGGAGGGACTGTTGTCTGGCTCGAGGACGGACTGTTGTCTGGCTCGGGACTGTTGTCTGGCTCGAGGACTGTTGTCTGGCTCGAGGGACTGTTGTCTGGCTCGAGGGGACTGTTGTCTGGCTCGAGGAGGACTGTTGTCTGGCTCGAGGACGGACTGTTGTCTGGCTCGAGGACTGGACTGTTGTCTGGCTCGAGGACTCGGACTGTTGTCTGGCTCGAGGACTCTGGACTGTTGTCTGGCTCGAGGACTCTTGGACTGTTGTCTGGCTCGAGGACTCTTAGGACTGTTGTCTGGCTCGAGGACTCTTATGGACTGTTGTCTGGCTCGAGGACTCTTATTGGACTGTTGTCTGGCTCGAGGACTCTTATTCGGACTGTTGTCTGGCTCGAGGACTCTTATTCTGGACTGTTGTCTGGCTCGAGGACTCTTATTCTAAGACTGTTGTCTGGCTCGAGACTGTTGTCTGGCTCGAGGACTGTTGTCTGGCTCGAGGGACTGTTGTCTGGCTCGAGGAGACTGTTGTCTGGCTCGAGGACGACTGTTGTCTGGCTCGAGGACTGACTGTTGTCTGGCTCGAGGACTCGACTGTTGTCTGGCTCGAGGACTCTGACTGTTGTCTGGCTCGAGGACTCTTGACTGTTGTCTGGCTCGAGGACTCTTAGACTGTTGTCTGGCTCGAGGACTCTTATTCTAATACTGTTGTCTGGCTCGAGACTGTTGTCTGGCTCGAGGACTGTTGTCTGGCTCGAGGAACTGTTGTCTGGCTCGAGGACACTGTTGTCTGGCTCGAGGACTACTGTTGTCTGGCTCGAGGACTCACTGTTGTCTGGCTCGAGGACTCTCTGTTGTCTGGCTCGAGGCTGTTGTCTGGCTCGAGGACTGTTGTCTGGCTCGAGGACCTGTTGTCTGGCTCGAGGACTTGTTGTCTGGCTCGAGGACTTGTTGTCTGGCTCGAGGACTCTGTTGTCTGGCTCGAGGACTCTGTTGTCTGGCTCGAGGACTCTTGTTGTCTGGCTCGAGGACTCTTATACAACAGTCCCCTCAAAAGAATCTGGCTCGAGGACTCTTATTTGGCTCGAGGACTCTTATTCTAATACCTCGAGGACTCTTATTCTAATTCGAGGACTCTTATTCTAATTCGAGGACTCTTATTCTAATATCGAGGACTCTTATTCTAATACCGAGGACTCTTATTCTAATCGAGCCAGACAACAGTCCCCGAGGACTCTTATTCTAATACAAGAGGACTCTTATTCTAATACAATTCGAGCCAGACAACAGTCCTCGAGCCAGACAACAGTCCCGTCCTCGAGCCAGACAACAGTTTAGAATAAGAGTCCTCGAGCTTAGAATAAGAGTCCTCGAGCCACAATCTCATTTGAATACATTCAGATCTGATGTCATTTGAATACATTCAGATCTGATGATATGAGATTGTATTAGAATAAGATGAGATTGTATTAGAATAAGAAATGAGATTGTATTAGAATATTGAATACATTCAGATCTGATGAATACATTCAGATCTGATGAATACATTCAGATCTGATGATTGATTAGGTACATTCAGATCTGATGATTGATTAGGACATTCAGATCTGATGATTACATTCAGATCTGATGATTGAACATTCAGATCTGATGATTGATTAGGGTTACATTCAGATCTGATGATTGATTAGGGTTTTTCAGATCTGATGATTGATTAGATCTGATGATTGATTAGGGAGATCTGATGATTGATTAGGGTATCTGATGATTGATTAGGGTTTTATCTGAATGTATTCAAATGAGATTGATGATTGATTAGGGTTTTAGTGTCATGATTGATTAGGGTTTTAGTGTCATGATTGATTAGGGTTTTAGTGTCGATCAGATCTGAATGTATTCAAATGATTGATTAGGGTTTTAGGATTGATTAGGGTTTTAGTGATTGATTAGGGTTTTAGTGTCTTGATTAGGGTTTTAGTGTCTTGATTAGGGTTTTAGTGTCGGATTAGGGTTTTAGTGTCGTCGGAGATTAGGGTTTTAGTGTCGTCGGACAGGGTTTTAGTGTCGTCGAGGGTTTTAGTGTCGTCGGACAGGGTTTTAGTGTCGTCGGACCCTAATCAATCATCAGATCTGAGGGTTTTAGTGTCGTCGGACCGGGTTTTAGTGTCGTCGGACCAGGCTGGTTTTAGTGTCGTCGGACCAGTTTTAGTGTCGTCGGACCAGGGTTTTAGTGTCGTCGGACCAGGCTTCATTCCCCGTTTTAGTGTCGTCGGACCAGGCTTCATTCCCCCTTTTAGTGTCGTCGGACCAGGCTTCATTCCCCTTTAGTGTCGTCGGACCAGGCTTCATTCCCCTTAGTGTCGTCGGACCAGGCTTCATTCCCCTAGTGTCGTCGGACCAGGCTTCATTCCTAGTGTCGTCGGACCAGGCTTCATTCCCTAGTGTCGTCGGACCAGGCTTCATTCCCCAGTGTCGTCGGACCAGGCTTCATTAGTGTCGTCGGACCAGGCTTCATTCAGTGTCGTCGGACCAGGCTTCATTCCCAGTGTCGTCGGACCAGGCTTCATTCCCCGTGTCGTCGGACCAGGCTTCATGTGTCGTCGGACCAGGCTTCATTCGTGTCGTCGGACCAGGCTTCATTCCCCTGTCGTCGGACCAGGCTTCATTGTCGTCGGACCAGGCTTCATTTGTCGTCGGACCAGGCTTCATTCTGTCGTCGGACCAGGCTTCATTCCCTGTCGTCGGACCAGGCTTCATTCCCCGTCGTCGGACCAGGCTTCATTCCCTCGTCGGACCAGGCTTCATTCTCGTCGGACCAGGCTTCATTCCTCGTCGGACCAGGCTTCATTCCCTCGTCGGACCAGGCTTCATTCCCCCGTCGGACCAGGCTTCATTCGTCGGACCAGGCTTCATTCCGTCGGACCAGGCTTCATTCCCGTCGGACCAGGCTTCATTCCCCGTCGGACCAGGCTTCATTCCCCCGTCGGACCAGGCTTCATTCCCCCGTCGGACCAGGCTTCATTGTCGGACCAGGCTTCATTCGTCGGACCAGGCTTCATTCCGTCGGACCAGGCTTCATTCCCGTCGGACCAGGCTTCATTCCCCGTCGGACCAGGCTTCATTCCCCCGTCGGACCAGGCTTCATTCCCCCCTCGGACCAGGCTTCATTCTCGGACCAGGCTTCATTCCTCGGACCAGGCTTCATTCCCTCGGACCAGGCTTCATTCCCCTCGGACCAGGCTTCATTCCCCCTCGGACCAGGCTTCATTCCCCCCTCGGACCAGGCTTCATTCCCCCCACGGACCAGGCTTCATTCCCGGACCAGGCTTCATTCCCCGGACCAGGCTTCATTCCCCCGGACCAGGCTTCATTCCCCCCGGACCAGGCTTCATTCCCCCCGGACCAGGCTTCATTCCCGGACCAGGCTTCATTCCCCGGACCAGGCTTCATTCCCCCGGACCAGGCTTCATTCCCCCCGACCAGGCTTCATTCCCCACCAGGCTTCATTCCCCCACCAGGCTTCATTCCCCCCACCAGGCTTCATTCCCCCCAACCAGGCTTCATTCCCCCCAATCCAGGCTTCATTCCCCCCCCAGGCTTCATTCCCCCCAATGGGGAATGAAGCCTGGTCCGACCAATTATCACTCCCTCACAGGGAGTGATAATTGGGGGGAATCCGAATTAACGAAGAAGATTTGTCCGAATTAACGAAGAAGATTTATTCGGATTGTGAGGGAGTGATTAACGAAGAAGATTTGTCCATGTCCATTTTCAACTTTTGATCTAGGATTTTCAACTTTTGATCTAGGGTTTCCAACTTTTGATCTAGGGTTTCTATCTAAAAGTTGAAAATGGACAAATTTCTCTGACTCAATTATTTTTGTAGGAATTATTTTTGTAGGTCTATTATTTTTGTAGGTCTTCAAGAAGGTCTTCAAGATCTTCTGAGTTTCAGCAAGATCTTCTGAGTTTCAGATCTTCTGAGTTTCAGGTGGGTTTACCTGAAACTCAGAAGATCTTGAACAGATTGGTGTAATGATGAGATTGGTGTAATGATGAAGGAGTCTGACTCATATTGGTGTAATGATGAAGGAGATTGGTGTAATGATGAAGGAGTCTTTGGTGTAATGATGAAGGAGTCTGACTCATGGTGTAATGATGAAGGAGTCTGACTCATGTGTAATGATGAAGGAGTCTGACTCATTGTAATGATGAAGGAGTCTGACTTGTAATGATGAAGGAGTCTGACTCATAATGATGAAGGAGTCTGACTCATGTGAGAAACATGATGAAGGAGTCTGACTCAATGAAGGAGTCTGACTCATTGAAGGAGTCTGACTCATATTACTAACTTTTTCTCTAGCTATGATTTTTTTTTTTTTATGATGTTTTTTATGATGTCAGGACATTTTATGATGTCAGGACAAGTTAGCTGTCAGGACAAGTTAGCATTCAGAGAATTTAGCCTCTCTGAATGCTAATCATGACCAGGAATAGATTTACTTTCAGATCCGTTTGTTAGAAACAAACGGATCTGAAAGTTTAGAAACAAACGGATCTGATGATTTTTTAGAAACAAACGGTCTGAAGCTAGTAGATCTGAGCTGAAGCTAGTAGATCTGAGTCTTTGAAGCTAGTAGATCTGAGTAGCAGTAGTTTGAAAGACTCATAGCAGTAGTTTGAAAGACTCTAATGACGAAACCCTAAGGCCTTCAAAGATTTAATACTTTGATTGTTATTGTTCTAGATTGTTATTGTTCTATCCACACTCTATTGTTCTATCCACACTCGCAAGTGTGGATAGAACAATAACAACAAGCATGGAAGATGAAGAAACTGCATGGAAGATGAAGAAACTCTGATCACATGGAAGATGAAGAAACTCTGATCATGCTTGAAGTAACTGCTGAAGGGAAGATGAAGAAACTCTGATCAGATTTCCATGCTTGAAGTAACTGCTGAGAAGATGAAGAAACTCTGATCAGATTTAAGATGAAGAAACTCTGATCAGATGAAGAAACTCTGATCAGATTAATTAGACAAAATCTGATCAGGCAATATTGAAAATGTAATAACATCGGATTAGCGAAAATGTAATAACATCGGATTAGCTAATAACATCGGATTAGCTAATAACATCGGATTAGCTGTATTAGCTGTTCTATCTTAATTATACCAAGATAGAACAGCTAATCCGAATATGTCAATGTATAGCTAAAAACTGTTTAAGATGGATCCACCAAAAACTGTTTAAGATGGATACCAAAAACTGTTTAAGATGGATCAACAAAGACATCGTAGTGAATACAAAGACATCGTAGTGAATCGTAACATCGTAGTGAATCGTACTGTAGTGAATCGTACTGTTGGTAAGAATCAAGTCGTCAAATCCAGAATCAAGTCGTCAAATAATCAAGTCGTCAAATCCTTGACGACTTGATTCTTACCTTTTGACGACTTGATTCTTACCTATTTGTTGCACGTTTGGTGGTTGCACGTTTGGTGAAATGTGGTGAAATGTAGTGTGGAAGAGGGAAATGTAGTGTGGAAGAGGAATGTAGTGTGGAAGAGGAGTGGAAGAGGAAGTGAAAGGAAGAGGAAGTGAAACTCTTTGAGGAAGTGAAACTCTTTGAAGTGAAACTCTTTGGTTTTCCTTTTTCACAGAGGATATGATAAGTGTAGGAACGAAGGAATGTTTTGTGTAGGAACGAAGGAATGTTTCTGCTCCAGTGAAATGTCTAAAGATAATAAATTAAAGGATACACAAATTACCATGACTCTGCTACCTCTAGGATTTGATAGCTACTAGTAAGACGGACACClick to see list of reads 22,921,618 - 22,921,827 22,921,989 - 22,922,198 22,922,005 - 22,922,214 22,922,015 - 22,922,224 22,922,017 - 22,922,226 22,922,022 - 22,922,231 22,922,023 - 22,922,232 22,922,025 - 22,922,234 22,922,059 - 22,922,268 22,922,061 - 22,922,270 22,922,062 - 22,922,271 22,922,063 - 22,922,272 22,922,064 - 22,922,273 22,922,065 - 22,922,274 22,922,066 - 22,922,275 22,922,067 - 22,922,276 22,922,068 - 22,922,277 22,922,069 - 22,922,278 22,922,070 - 22,922,279 22,922,071 - 22,922,280 22,922,072 - 22,922,281 22,922,073 - 22,922,282 22,922,074 - 22,922,283 22,922,075 - 22,922,284 22,922,076 - 22,922,285 22,922,077 - 22,922,286 22,922,078 - 22,922,287 22,922,079 - 22,922,288 22,922,082 - 22,922,291 22,922,083 - 22,922,292 22,922,084 - 22,922,293 22,922,086 - 22,922,295 22,922,087 - 22,922,296 22,922,088 - 22,922,297 22,922,089 - 22,922,298 22,922,090 - 22,922,299 22,922,094 - 22,922,303 22,922,128 - 22,922,337 22,922,140 - 22,922,349 22,922,141 - 22,922,350 22,922,142 - 22,922,351 22,922,143 - 22,922,352 22,922,144 - 22,922,353 22,922,145 - 22,922,354 22,922,146 - 22,922,355 22,922,147 - 22,922,356 22,922,149 - 22,922,358 22,922,150 - 22,922,359 22,922,151 - 22,922,360 22,922,152 - 22,922,361 22,922,153 - 22,922,362 22,922,168 - 22,922,377 22,922,171 - 22,922,380 22,922,174 - 22,922,383 22,922,177 - 22,922,386 22,922,178 - 22,922,387 22,922,179 - 22,922,388 22,922,182 - 22,922,391 22,922,192 - 22,922,401 22,922,198 - 22,922,407 22,922,205 - 22,922,414 22,922,207 - 22,922,416 22,922,208 - 22,922,417 22,922,209 - 22,922,418 22,922,210 - 22,922,419 22,922,211 - 22,922,420 22,922,212 - 22,922,421 22,922,213 - 22,922,422 22,922,214 - 22,922,423 22,922,215 - 22,922,424 22,922,216 - 22,922,425 22,922,221 - 22,922,430 22,922,226 - 22,922,435 22,922,227 - 22,922,436 22,922,257 - 22,922,466 22,922,263 - 22,922,472 22,922,269 - 22,922,478 22,922,280 - 22,922,489 22,922,286 - 22,922,495 22,922,287 - 22,922,496 22,922,288 - 22,922,497 22,922,296 - 22,922,505 22,922,298 - 22,922,507 22,922,299 - 22,922,508 22,922,300 - 22,922,509 22,922,301 - 22,922,510 22,922,302 - 22,922,511 22,922,303 - 22,922,512 22,922,306 - 22,922,515 22,922,349 - 22,922,558 22,922,531 - 22,922,740 22,922,536 - 22,922,745 22,922,545 - 22,922,754 22,922,763 - 22,922,972 22,923,164 - 22,923,373 22,923,325 - 22,923,534 22,923,418 - 22,923,627 22,923,749 - 22,923,540 22,923,388 - 22,923,179 22,923,272 - 22,923,063 22,923,129 - 22,922,920 22,923,058 - 22,922,849 22,923,012 - 22,922,803 22,922,801 - 22,922,592 22,922,746 - 22,922,537 22,922,740 - 22,922,531 22,922,737 - 22,922,528 22,922,696 - 22,922,487 22,922,381 - 22,922,172 22,922,349 - 22,922,140 22,922,337 - 22,922,128 22,922,321 - 22,922,112 22,922,287 - 22,922,078 22,922,256 - 22,922,047 22,922,245 - 22,922,036 22,922,234 - 22,922,025 22,922,221 - 22,922,012 22,922,210 - 22,922,001 22,922,191 - 22,921,982 22,922,189 - 22,921,980 22,922,174 - 22,921,965 22,922,168 - 22,921,959 22,922,166 - 22,921,957 22,922,164 - 22,921,955 22,922,151 - 22,921,942 22,922,146 - 22,921,937 22,922,126 - 22,921,917 22,922,115 - 22,921,906 22,922,114 - 22,921,905 22,922,113 - 22,921,904 22,922,111 - 22,921,902 22,922,110 - 22,921,901 22,922,108 - 22,921,899 22,922,107 - 22,921,898 22,922,104 - 22,921,895 22,922,103 - 22,921,894 22,922,102 - 22,921,893 22,922,100 - 22,921,891 22,922,098 - 22,921,889 22,922,097 - 22,921,888 22,922,096 - 22,921,887 22,922,095 - 22,921,886 22,922,094 - 22,921,885 22,922,091 - 22,921,882 22,922,090 - 22,921,881 22,922,089 - 22,921,880 22,922,088 - 22,921,879 22,922,087 - 22,921,878 22,922,086 - 22,921,877 22,922,085 - 22,921,876 22,922,084 - 22,921,875 22,922,083 - 22,921,874 22,922,082 - 22,921,873 22,922,081 - 22,921,872 22,922,080 - 22,921,871 22,922,079 - 22,921,870 22,922,077 - 22,921,868 22,922,076 - 22,921,867 22,922,073 - 22,921,864 22,922,071 - 22,921,862 22,922,070 - 22,921,861 22,922,069 - 22,921,860 22,922,047 - 22,921,838 22,922,044 - 22,921,835 22,922,042 - 22,921,833 22,922,041 - 22,921,832 22,922,040 - 22,921,831 22,922,039 - 22,921,830 22,922,038 - 22,921,829 22,922,037 - 22,921,828 22,922,036 - 22,921,827 22,922,034 - 22,921,825 22,922,032 - 22,921,823 22,922,031 - 22,921,822 22,922,029 - 22,921,820 22,922,025 - 22,921,816 22,922,023 - 22,921,814 22,922,021 - 22,921,812 22,922,020 - 22,921,811 22,922,017 - 22,921,808 22,922,014 - 22,921,805 22,922,013 - 22,921,804 22,922,012 - 22,921,803 22,922,011 - 22,921,802 22,922,010 - 22,921,801 22,922,007 - 22,921,798 22,922,006 - 22,921,797 22,922,000 - 22,921,791 22,921,998 - 22,921,789 22,921,997 - 22,921,788 22,921,954 - 22,921,745 Click to see list of phasing windowsClick to see list of phasing windows
Gene map
Phasing analysis map
Phasing Analysis (above): Each dot represents a "window" of ten cycles of small RNAs of length 21 nt (where 21 is set in the control panel under Select phasing analysis options), with the score for the degree of phasing indicated on the Y axis (scores calculated approximately as described by Howell et al., 2007). The red dot is the highest scoring window and has the best score in this region. Other colored dots are windows which are in phase with the highest scoring window -- exactly-in-phase windows appear as filled dots, and almost-in-phase (-1/+1) windows as hollow dots. Only those reads corresponding to the featured length (the default length is 21 nt) are considered.

Gene Chr Strand Gene Type 5' End 3' End Model # of Splice Variants
ath-MIR166b 3 w miRNA 22,922,206 22,922,325 1 No splice variant annotated
    Predicted function: miRNA