Arabidopsis small RNA Gene Analysis

The basic information for the gene you have selected is displayed below. The "small RNA Information" section sums the reads that map to either strand of the gene of interest, indicating the total (normalized) read abundance, the count of distinct (different) sequences, and providing links to a downloadable file with that information, and web pages that provide detailed information on the complete set of individual sequences derived from the gene. View a legend that explains the icons and colors in the image below. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.



TCCTGTCTAGTTGTGTGAAAGCAACTAGACAGGAGAGCCCATACCCAACTAGACAGGAGAGCCCATCTTTCACACAACTAGACAGGAGAGCCCATACCTATATGTCTCTGTACGCTTTATATATGTCTCTGTACGCTTCTTAGGTCAATATATATGTCTCTTAGGTCAATATATATGTCTCTTTCTTAGGTCAATATATATGTCTCTGTACGCAACTAGAGGATCATCTGATTTAAAAATCAGATGATCCTCTAGAACAGATAAAAATCAGATGATCCTCTAGTCTGCTATGTATCAGATGGGAACAGACTCAATCGTCTTAAAACAACCACCTCAATCGTCTTAAAACAACAACCTCAATCGTCTTAAAACAGTGAGGGCATGGCCTGTCGGGTCACGTTCGTCTTCAACCTCACCTCACGTTCGTCTTCAACCTCAATCGTCCCTGTTGTCCACAGCGTCTTCGGGAACCCGACAGGCCATGCCCTCACGTACAACAGGGGAACCCGACAGGACAACAGGGGAACCCGACAGGCCATGCCCTGGACAACAGGGGAACCCGCTGTGGACAACAGGGGAACCTGTGGACAACAGGGGAACCCGACAGGCCATGCGCTGTGGACAACAGGGGAACGCTGTGGACAACAGGGGAACCACGCTGTGGACAACAGGGGAACCCGACGCTGTGGACAACAGGGGAACCCGACGACGCTGTGGACAACAGGGGAAGACGCTGTGGACAACAGGGGAACCCGACAGACGCTGTGGACAACAGGGGAACCAGACGCTGTGGACAACAGGGGAACCCGATGAAGACGCTGTGGACAATTGAAGACGCTGTGGACAACAGGGGAACCCGTTGAAGACGCTGTGGACAACAGGGGAACCCGACCTTGAAGACGCTGTGGACAACAGGGGACTTGAAGACGCTGTGGACAACAGGGGAACCACTTGAAGACGCTGTGGACAAACTTGAAGACGCTGTGGACAACATGACTTGAAGACGCTGTGGACTGACTTGAAGACGCTGTGGACAACAGGGGAAGTGACTTGAAGACGCTGTGGACGTGACTTGAAGACGCTGTGGACAACAGGGGTGACTTGAAGACGCTGGGTGACTTGAAGACGCTGTGAGGTGACTTGAAGACGCTGAGGTGACTTGAAGACGCTGCAAGAGAGGTGACTTGAAGACGCTGTGGTCACAAGAGAGGTGACTTGTCACAAGAGAGGTGACTTGATTGTTCGTGTTGGGTCACTTTGTTCGTGTTGGGTCACACTAAGAATGGTTTGTGGTGCAACTAAGAATGGTTTGTGGTGCAATGTGTCAGTAGTATGAATGGGACGATGTAGCTTTACATCGTCCCATTCATCATGGGCAACCGGCTCTGCTTTACATCACATGGGCAACCGGCTCTGCTACATGGGCAACCGGCTCTGCTTTACATCGTCCGACATGGGCAACCGGCTCTACGGACATGGGCAACCGGCTCTGCTTTACGACGGACATGGGCAACCGTGGACGGACATGGGCAACTGGACGGACATGGGCAACCGTGGACGGACATGGGCAACCGGCTCTGCTTGATGGACGGACATGGGCAACCGGCTGATGGACGGACATGGGCAACCGGCTCTTGATGGACGGACATGGGCAACCGGCTCTGCTTTTTGATGGACGGACATGGGCAACCGGCTTTGATGGACGGACATGGGCAACCGGCTCTGCTTCTTGATGGACGGACATGGGCAACCGACTTGATGGACGGACATGGGCAAACTTGATGGACGGACATGGGCAACCGGCTCTAACTTGATGGACGGACATGGAAACTTGATGGACGGACATGGGCAATAAACTTGATGGACGGACATGTCTAAACTTGATGGACGGACATGGGCAACCGCTCTAAACTTGATGGACGGACAGCTCTAAACTTGATGGACGGACATAGCTCTAAACTTGATGGACGGACATGGGCTAGCTCTAAACTTGATGGACGGACATGGGCAATAGCTCTAAACTTGATGGACGGACATGGGCTACATAGCTCTAAACTTGATATACATAGCTCTAAACTTGATGATACATAGCTCTAAACTTGATGGACGCATAACATACATAGCTCTAAACTTGATGGACGGTCACGTAGGGGAGAAACGAATAAGACTTATGGTCTAGGTATGATCCCTCATCTGCTTATGGTCTAGGTAATGTCTGCTTATGGTCTATGGGACAATGTCTGCTTATTTGGGACAATGTCTGCTTTTGGGACAATGTCTGCTTATGTTGGGACAATGTCTGCTTATGGTCTAGTTCCTTGGGACAATGTCTGCTTCCTTGGGACAATGTCTGCTTATGGACTTCCTTGGGACAATGTCTGCTTATGGAGGGTACTTCCTTGGGACAATGGCTGGCGAACAAGAGGCTGGCTGGCGAACAAGAGGCTACTGGCTGGCGAACAAGAGGCTAAACTGGCTGGCGAACAAGAGACTGGCTGGCGAACAAGAGGCTAGGTACGACTGGCTGGCGCCGTTCTGCAGGTACGACTGGCTGGCGGATCAAAATCGTGCACCGCGATCAAAATCGTGCACCGTTCTGCGATAACTGTAGGGATGTGTTTTCATGCACTAGGTAGACAAATGGAGACGTAAGGTTGCACTAGGTAGACGATGATGCGCAAATGCGGATAATGATGCGCAAATGCGGATATGATGCGCAAATGCGGATAATGATGCGCAAATGCGGATATTGATGCGCAAATGCGGATTGATGCGCAAATGCGGATATGATGCGCAAATGCGGATATGATGCGCAAATGCGGATATGCATCATCTCTGACAGATTGCATTTGCGCATCATCTCTGACGCATTTGCGCATCATCTCTGATCCGCATTTGCGCATCATCTTCCGCATTTGCGCATCATCTCTCCGCATTTGCGCATCATCTCTGATCCGCATTTGCGCATCAATCCGCATTTGCGCATCATCATCCGCATTTGCGCATCATCTTATCCGCATTTGCGCATCATCTCTATATCCGCATTTGCGCATCAATATCCGCATTTGCGCATCATCTATATCCGCATTTGCGCATCTATATCCGCATTTGCGCATCATATATCCGCATTTGCGCATCATTTATATCCGCATTTGCGCATCTTATATCCGCATTTGCGCATCATTTATATCCGCATTTGCGCTTTATATCCGCATTTGCGCATTTATATCCGCATTTGCGCATTTTATATCCGCATTTGCGCATCCTTTATATCCGCATTTGCCTTTATATCCGCATTTGCGCTTTATATCCGCATTTGCGCCTTTATATCCGCATTTGCGCACTTTATATCCGCATTTGCGCATCTTTATATCCGCATTTGCGCATCCTTTATATCCGCATTTGCGCATCACCTTTATATCCGCATTTGCGCTACCTTTATATCCGCATTTGCGCATGATATACCTTTATATCCGCAATGATATACCTTTATATCCGCAGTGAAAAGGGTTTATCAGAAAACAACAAAATGTGAAAAGGGTTTATCAGAACAACAAACCAATAGAGGTGCTGTAAATCAGGACAACAAACCATATCCGCATTTGCGCATCAATCCGCATTTGCGCATCACGGATATCAATGTAAATCAGGCGGATATCAATGTAAATCAGGAGCGGATATCAATGTAAATCAGGACTGCGGATATCAATGTAAATCTGCGGATATCAATGTAAATCAGGTGCGGATATCAATGTAAATCAGGAATGCGGATATCAATGTAAATATGCGGATATCAATGTAAATCAATGCGGATATCAATGTAAATAAATGCGGATATCAATGTAAAATGCGGATATCAATGTAAAAATGCGGATATCAATGTAAAAAATGCGGATATCAATGTAAATCAAATGCGGATATCAATGTCAAATGCGGATATCAATGTAACAAATGCGGATATCAATGTAAATCGCAAATGCGGATATCAATGGCAAATGCGGATATCAATGTGCAAATGCGGATATCAATGTAGCAAATGCGGATATCAATGTAAATCCGCAAATGCGGATATCAACGCAAATGCGGATATCAATCGCAAATGCGGATATCAATGCGCAAATGCGGATATCAATGTCGCAAATGCGGATATCAATGTACGCAAATGCGGATATCAATGTAACGCAAATGCGGATATCAATGTAAACGCAAATGCGGATATCAATGTAAATATGCGCAAATGCGGATATCATGCGCAAATGCGGATATCAATGCGCAAATGCGGATATCAAATGCGCAAATGCGGATATCAATGATGCGCAAATGCGGATATCAATGTATGCGCAAATGCGGATATCAATGTAGATGCGCAAATGCGGATATGATGCGCAAATGCGGATATCATGATGCGCAAATGCGGATTGATGCGCAAATGCGGATATGATGCGCAAATGCGGATATTGATGCGCAAATGCGGATATCAATGATGCGCAAATGCGGATATGATGCGCAAATGCGGATAATGATGCGCAAATGCGGATATATGATGCGCAAATGCGGATATCAATGATGCGCAAATGCGGATATCAAAATGATGCGCAAATGCGGAAATGATGCGCAAATGCGGATAATGATGCGCAAATGCGGATAAATGATGCGCAAATGCGGATATAATGATGCGCAAATGCGGATATCGAAATGATGCGCAAATGCGGATGAAATGATGCGCAAATGCGGATATTGAAATGATGCGCAAATGCGGTGAAATGATGCGCAAATGCGGATTGAAATGATGCGCAAATGCGGATAATGAAATGATGCGCAAATGCGGATATGAAATGATGCGCAAATGCGGATATATGAAATGATGCGCAAATGCGGATATGAAATGATGCGCAAATGCGGATCATTATTACTATATCAAGATCTACATTATTACTATATCAAGATCTCAACTAAAGAGGAGATTGTAACAGTGCAAGAGGAGATTGTAACAGTGCAAAGAGGAGATTGTAACAGTGCAAACCCACTGTTACAATCTCCTCTTGCGCTACTGCTTGTAACTTTCGCACTGACTGCTTGTAACTTTCGCACTGACTGCTTGTAACTTTCGCACTGAGGAGGACTGCTTGTAACTTTCGCACTGAGCAGGACTGCTTGTAACTTTCGCACTCCAGGACTGCTTGTAACTTTCGCACTCCAGGACTGCTTGTAACTTTCGCACTGAGACCAGGACTGCTTGTAACTTTCGCATTACCAGGACTGCTTGTAACTTTCGCACTCTTACCAGGACTGCTTGTAACTTTCGCACTTATCTTACCAGGACTGCTTGTAACTATCTTACCAGGACTGCTTGTAACTTTATCTTACCAGGACTGCTTGTAACTTTCACATTATCTTACCAGGACTACATTATCTTACCAGGACTGCTTACATTATCTTACCAGGACTGCTTGTAGACATTATCTTACCAGGACTGACATTATCTTACCAGGACTGTGACATTATCTTACCAGGACTTTGGTGACATTATCTTACCAGGACTGATTTGGTGACATTATCTTACCAGGACTTTGGATTTGGTGACATTATCTTACCAGGACTTAATTGGATTTGGTGACATTATCATAATTGGATTTGGTGACATTATCCATAATTGGATTTGGTGACCATAATTGGATTTGGTGACATTGCATAATTGGATTTGGTGACACAGCATAATTGGATTTGGTGACATTAACAGCATAATTGGATTTGGTGACATTATCTCTACAGCATAATTGGATTTGGTGGTGGCTACAGCATAATTGGATTTGGTGACATGTTTGATCCTTGGGGTGAATGTTTGATCCTTGGGGAATGTTTGATCCTTGGGGTCGAATGTTTGATCCTTGGGGTGTGGGATCTTTAGTAGCATCACGAATGTTTGATCCTTGGAAAGATCCCACGAATGTTTGATCCTTGGTAAAGATCCCACGAATGTTTGATCCGGAGAGGACGGAATTCCAACGGAGAGGACGGAATTCCAATGCTACGCGGAGAGGACGGAATTCAGCGGAGAGGACGGAATTCAGCGGAGAGGACGGAATTCCAATAAGCGGAGAGGACGGAATTCCAAGCGGAGAGGACGGAATTCCAGAAGCGGAGAGGACGGAATTCCGAAGCGGAGAGGACGGAATTCCAATCAGAAGCGGAGAGGACGGAATACAGAAGCGGAGAGGACGGAATTCCAATGCTAGACAGAAGCGGAGAGGACGGACAGAAGCGGAGAGGACGGAATTTGACAGAAGCGGAGAGGACTGACAGAAGCGGAGAGGACGGAATTGGTGACAGAAGCGGAGAGGACGGAATTTAGCCCGTGGTGACAGAAGCGGAGAATGTGGGAAAATGGGAAAAGACGTGTGGGAAAATGGGAAAAGACGTATTATCGGAGAATTGTACGTCTTTTATATTATCGGAGAATTGTACGTCTATCTGTCTGCTCCACACTGATATTATCGGCTACACATACTTATCTGTCTGACTACACATACTTATCTGTCTGTGTTAGATATTCCAACTACACATACTTATCTGCTTGCATGATGGTCTGGAGCAATGCAAGAAGACTTTGTTAGATATTCATCATGCAAGAAGACTTTGTTATTGTGGTAAGTTTTTCTTTTTTGCTCCATGAAAGCGTGATGATTGTGGTTCCGTGAAAGCGTGATGATTGTATGGTGGTTCCGTGAAAGCGTGATGATTTGTATGACATCTTCTGGGTCATGTATGACATCTTCTGCCTTCATGTATGACATCTTCTGGTGTGCCTTCATGTATGACATCAGCTGTGCCTTCATGTATGACACAGCTGTGCCTTCATGTATGACATTCTTCTCAGCTGTGCCTTGGTTTGTTCTTCTCAGCTGCGGGTTTGTTCTTCTCAGCTGTGCCTTGAACTCTTACGTAAACAGCATTGAACTCTTACGTAAACAGTCATTGAACTCTTACGTAAACAGClick to see list of reads 233,133 - 233,342 233,388 - 233,597 234,012 - 234,221 234,013 - 234,222 234,399 - 234,608 234,492 - 234,701 234,600 - 234,391 234,501 - 234,292 234,469 - 234,260 234,378 - 234,169 234,375 - 234,166 234,335 - 234,126 234,291 - 234,082 234,290 - 234,081 234,273 - 234,064 234,156 - 233,947 234,153 - 233,944 234,152 - 233,943 234,150 - 233,941 234,149 - 233,940 234,146 - 233,937 234,145 - 233,936 234,144 - 233,935 234,143 - 233,934 234,142 - 233,933 234,141 - 233,932 234,138 - 233,929 234,128 - 233,919 234,117 - 233,908 234,045 - 233,836 234,038 - 233,829 234,037 - 233,828 234,036 - 233,827 234,035 - 233,826 234,034 - 233,825 234,031 - 233,822 234,030 - 233,821 234,027 - 233,818 233,798 - 233,589 233,611 - 233,402 233,574 - 233,365 233,446 - 233,237 233,430 - 233,221 233,412 - 233,203 233,328 - 233,119 233,266 - 233,057 233,264 - 233,055 233,247 - 233,038 233,204 - 232,995 233,201 - 232,992 233,102 - 232,893 233,092 - 232,883 233,066 - 232,857 Click to see list of phasing windowsClick to see list of phasing windows
Gene map
Phasing analysis map
Phasing Analysis (above): Each dot represents a "window" of ten cycles of small RNAs of length 21 nt (where 21 is set in the control panel under Select phasing analysis options), with the score for the degree of phasing indicated on the Y axis (scores calculated approximately as described by Howell et al., 2007). The red dot is the highest scoring window and has the best score in this region. Other colored dots are windows which are in phase with the highest scoring window -- exactly-in-phase windows appear as filled dots, and almost-in-phase (-1/+1) windows as hollow dots. Only those reads corresponding to the featured length (the default length is 21 nt) are considered.

Gene Chr Strand Gene Type 5' End 3' End Model # of Splice Variants
ath-MIR2112 1 c miRNA 234,159 234,006 1 No splice variant annotated
    Predicted function: miRNA