Arabidopsis small RNA Gene Analysis

The basic information for the gene you have selected is displayed below. The "small RNA Information" section sums the reads that map to either strand of the gene of interest, indicating the total (normalized) read abundance, the count of distinct (different) sequences, and providing links to a downloadable file with that information, and web pages that provide detailed information on the complete set of individual sequences derived from the gene. View a legend that explains the icons and colors in the image below. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.



GGGCGGGAAAGAGCATGACCACGGCGGGAAAGAGCATGACCACACCACGGATAGTTAGATGGCACCACGGATAGTTAGATGGCAAAGTTTAGACTTGTGAGATTTGAGAGATTAGACTTGTGAGATTTGAGATTAGACTTGTGAGATTTGAGAGAATAGACTTGTGAGATTTGAGAGAATAAATGTTACACCGTGGGTAAAATCTTACCCACGGTGTAACATTTTAGGTAGATTTTACCCACGGTGTAACATTTCTGTTAATATTGTTTGTTTTTTTCTTCTTTTTACACTCGATTTGGTCTTGAACACGAGTGGATTTTACTAATTTGTCATTACTCCTATTCATTAGTAAGGAGACAGTTTTAGAGCATAATAAGTTCGGAAACTAAAACGGCATATAAAATTAGCAACTGGTTTATTTATATTCAGACCTGTTGTATTTTTCTGAACCTGTTCTTCTTTGTAAATGTGCAGCAGATGAGGCATGATTTCGGAAATCACAATTTTCTTGTAAAAACCTGAACTAATTTGAGGTAATATACAGGCACAAGAACACTATACAGGCACAAGAACACGCTATCAGCGTGTTCTTGTGCCGAGGTCATCAGGGGTTGTCTGAACATTTGTATTGTGAGGTTCTGAACATTTGTATTGTGAGTCTGAACATTTGTATTGTGAGGTCATTCTGAACATTTGTATTGTGAGGTCATTCATTCTGAACATTTGTAATTCATTCTGAACATTTGTATTGTGAGGTCGCATTCATTCTGAACATTTGTATTGTGAGATTTTGCATTCATTCTGAACAAAGCGGGCGAGTTGAGTTAAAAGCGGGCGAGTTGAGTTAATTATGAAGTTATGATTATATCCAAAGCGGGCAGGGTTTAATAGGAAAGCCAAGGGGGGTGGAGAGGGGAAGGGGTAAATGTAGAGCCAAGGGAGTAAATGTAGAGCCAAGGGATGGGAGAGTAAATGTAGAGCTGATGGGAGAGTAAATGTAGAGCCAATATGGAATGATGGGAGAGTAAATGTAGAGCCAGAGAAAATATGGAATGATTAATGGAGAAAATATGGAATGATAATGTAATGGAGAAAATAGAATGTAATGGAGAAAATAAGAATGTAATGGAGAAAATATAGAATGTAATGGAGAAAATAGTAGAATGTAATGGAGAAAATATGTAGAATGTAATGGAGAAAATATTGTAGAATGTAATGGAGAAAATAATTGTAGAATGTAATGGAGAAAATATTGTAGAATGTAATGGAGAAAATATATTGTAGAATGTAATGGAGAAAATATTATTGTAGAATGTAATGGATTATTGTAGAATGTAATGGAGAATTATTGTAGAATGTAATGGAGAAATTATTGTAGAATGTAATGGAGAAAATAGTTATTGTAGAATGTAATGGAGAAAAGTTATTGTAGAATGTAATGGAGAAAATAGGTTATTGTAGAATGTAATGGAGAAAATACGGTTATTGTAGAATGTAATCGGTTATTGTAGAATGTAATGGAGAAAATATCGGTTATTGTAGAATGTAATGGAGAAAATATTCGGTTATTGTAGAATGTAATGGAGAAAATATTTCGGTTATTGTAGAATGTAATTTTCGGTTATTGTAGAATGTAATGGAGAAAATATTTTCGGTTATTGTAGAATGTTTTCGGTTATTGTAGAATGTAATGGATTTTCGGTTATTGTAGAATGTAATGGAGAAAATATTTTTTCGGTTATTGTAGAATGTAATTTTTTTCGGTTATTGTAGAATGTAATGATGTCGAAAAGTTTGTTTCATGTCGAAAAGTTTGTTTGCACATGTCGAAAAGTTTGTTTTACTTGCACATGTCGAAAAGTTTGTTATTTACTTACTTGCACATGTCGAAAAGTTTATAGCTCCTGGATCATCAGCTTGATGATCCAGGAGCTATGCTCTAGCTGATGATCCAGGAGCTCAGCGGCTTTAGCTGATGATCCAGGAGCCCAGCGGCTTTAGCTGATGCTGTAGCTCAACCGCCAAGCCCAGCGGCTTTACCTGTAGCTCAACCGCCAAGCCCAGCGGCCACCACCTGTAGCTCAACCGCATGGGATCTCGAGCTTTAGTTCAATGGGATCTCGAGCTTTAGTAATGGGATCTCGAGCTTTAGTTCCAATGGGATCTCGAGCTTTAGTTCCAGCACAATGGGATCTCGAGCTTTAGTTCCTGTCCCAATGGGATCTCGAGCTTCAACCTGTGGATAAAAGAGGTCACCTGTGGATAAAAGAGGTCAACCTGTGGATAAAAGAGGTCAACGTTGAAAGAATTTATCAAGGAACAACTGCAAAAAAAAAAAAAAAAGCAAAAAAAAAAAAAAAAAGCAAAAAAAAAAAAAAAAAAGCAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAACACATTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTATGTGTTTTTTTTTTTTTAGTATGATATCTCTGCCTCAGTAGGCACGGGAGATCCTCGAATGACAGTAGGCACGGGCGAATGACAGTAGGCACGGGATTGCGAATGACAGTAGGCATTGCGAATGACAGTAGGCACGAATTGCGAATGACAGTAGGCACGGGTTCTGTCCGCTGGGTCTGCGGACAGAACCCAATTGCGAATCAGACCCAGCGGACAGAACCCAATTGCACAGACCCAGCGGACAGAACCCAAAACAGACCCAGCGGACAGAACAAACAGACCCAGCGGACAGAACCCAATTGCATAGAAACAGACCCAGCGGACGAATAGAAACAGACCCAGCGGACAGAATAGAAACAGACCCAGCGGACAGATTCCAATTCCTAAAATTTCTTGAGACGAATGGCTCCTGTACTTTCAGATCTGAAAGTACAGGAGCCATTCTCTGTACTCTGAAAGTACAGGATCTACTCTGAAAGTACAGTCTACTCTGAAAGTACAGGCTTCTACTCTGAAAGTACAGGTACAACCTTCTACTCTGAAAGTACAGGAGTACAACCTTCTACTCTGAAATAATAATCTAGTGGCAAGCCTAATAATCTAGTGGCAAGGTTTTCTGTTGTAGGATCCAAAGCCCTGGGCTTGTAAGTATTTGTTTATGACGATATGCCCTGGGCTGTGACGATATGCCCTGGGCTTGTGACGATATGCCCTGGGCATGTGACGATATGCCCTGGGCTCATGTGACGATATGCCCTTTTTCATGTGACGATATGAGTTTTCATGTGACGATATGCCCTGGGCTTTCAACAGTTTTCATGTGACTGCCATTTCCGGAAGAGCTAGAGGTTTCCGGAAGAGCTAGAGGTCTTCCGGAAATGGCAAATCTGTTCCGGAAATGGCAAATCTGTTTTCCGGAAATGGCAAATCTGTTCAACTCTTCCGGAAATGGCAAATCTGTTCAACAGTGTAAGACCTCTAGCTCTTCCGATAATATGAATCTGCAACTTCTCATTAACGAGCATATGTAGAAGTAGCATATGTAGAAGTGTTGAACTTCTACATATGCTCGTTAATGAACACTTCTACATATGCTCGTTGGTATGTATCTCCACAGCTTCTCTGAGAAGTTTCAAGGGTGGACCTGCATCTGAAGAGTTCTTCCCGCAACATCTGAAGAGTTCTTCCACCTCTACAATTGACATCTGAACTTATTTAAGGTTGCTGGGATCTTCTTCAACCTCTACAATTGTCCCAGCAACCTTAAATAAGTCCAAATTACGGATCCCAGCAATGCCAAATTACGGATCCCAGCAACCTTAGTGTACCTGACATGCTGAACATCCCTGCTAGGGCGGATGTAGCAGGGATGTTGCGGTTTTGGATTTAGCAGGGATGTTGCGGTTTTGGATTTCAGCAGGGATGTTGCGGTTTTGGATTTCTCTTCATGGTCATAGGTACATGTGCTCGAGGAGGAATTGTAAATTCCTCCTCGAGCACAGCAATTCCTCCTCGAGCACAGCTGATACAATTCCTCCTCGAGCACAGGGATCTGTCTCCAGTACCTGATTAAGACTGGATCTGTCTCTTAAGACTGGATCTGTCTCCAACTTAAGACTGGATCTGTCTCACTTAAGACTGGATCTGTCTCCCCACTTAAGACTGGATCTGTCCACTTAAGACTGGATCTGTCTCCCCCACTTAAGACTGGATCTGTCCTGCCCACTTAAGACTGGATCTGTCTCCCCCTGCCCACTTAAGACTGCTACCCCCTGCCCACTTAAGACAAGCTCTGATACTACCCCCTGCCCCAAGCTCTGATACTACCCCCTCAAGCTCTGATACTACCCCCTGCCCACTTTCAAGCTCTGATACTACCTCAAGCTCTGATACTACCCCTCAAGCTCTGATACTACCCCCGTTCAAGCTCTGATACTACCAGTTCAAGCTCTGATACTAAGTTCAAGCTCTGATACTACCCCCTTCAGTTCAAGCTCTGATACTTCAGTTCAAGCTCTGATACTACCCCTCAGTTCAAGCTCTGATACTACCCCCTGCCTTACATCAGTTCAAGCTCTGATACTCTTCTCCACTTACATCAGCATGGTAGACTTGTTCTCTTCGAGGACACCATGGTAGACTTGAAGCTGAATGGAGAGGACACAAAGCTGAATGGAGAGGACACCAAAGCTGAATGGAGAGGACACCAGGCATCAAAGCTGAATGGAGAGGACACCTGTTGATTGTTTGTATTCCTTTGTTGATTGTTTGTATTCCTCAGAAGAAAGCTCGGAGGCTTGTCTGCAAAGACAGTGGTGTCTTATACGAGGATTGTTTGAAAGACAGTGGTGTCTTATACGAGGATATGTTTGAAAGACAGTGGTGTCTTATAATGCTTTATGTTTGAAAGACCGGAAATATTGCTGAGAGATTTCTCGGAAATATTGCTGAGAGATATCGGAAATATTGCTGAGAGATTTCGCCATATTTTTTTCTGTTTCGTACCTGTTGAAGAGCAAACTTGTACCTGTTGAAGAGCATTGTACCTGTTGAAGAGCAAACCAATACGGAACCATCAACTTCATCTGTGGTTCCGCCATTGTACCTGAAGTTGATGGTTCCGCCATTGGGGGCAGAAGGAGTTCCAGATTAGGGGCAGAAGGAGTTCCAGCAACATGGTCCCGTAGGGGCAGTGAACAACATGGTCCCGTATGAACAACATGGTCCCGTAGGGGCAGAATGAACAACATGGTCCCGTAGGGGCAGAATGAACAACATGGTCCCGTAGGGGCAGAAGGAGTTCTCAAATGAACAACATGGTGTCTCAAATGAACAACATGGTCCCGAGCTGTCTCAAATGAACAACCCACCTGGAGCTGTCTCAAATGAACACTCCACCTGGAGCTGTCTCGGTCCTCTTGCAATAGAGGCTCACCTGATCTCCTTAGTGACCATAGATCCACAAACTCCATCAATATAGATCCACAAACTTAATATAGATCCACAAACTCAGTAATATAGATCCACAAACTCCATCACCTGTAAGTAATATAGATCCACAAACTTAAGTAATATAGATCCACAAACTCCATCACCAACTTTAAGTAATATAGATCCACAAACTCTCACATCCCAATGGAACTGGGGCCTAGAAAGAGAAGAACTAACTTAGAGCACAACAACAGCCTCAAACTTAGAGCACAACAACCAAACTTAGAGCACAACAACAGCCCAAACTTAGAGCACAACAACAGCCTTCAAACTTAGAGCACAACAACAGCCTATCAAACTTAGAGCACAACCATCAAACTTAGAGCACAACAACAGCCTTAGAGTGCCATCAAACTTAGAGCACAACAACAGCCGAAGATACCGCAGACCAGAGTGCGTTGAAGATACCGCAGACCAGAGTGCCAACGTTGAAGATACCGCAGACCAGAGTAAAACGTTGAAGATACCGCAGACCAGCAGAAAACGTTGAAGATACCGCAGGCAGAAAACGTTGAAGATACCGCTTTTTAATCAATGAAGACTATGTCATTGATTAAAAAGGCAGATCTTCATTGATTAAAAAGGCAGGGAAGTTTGTGCTAAACGACTTTGATGCTTATGAAAGTTACTTTGACGGGAAAATTTCCGGAGCGCCAGCAAAATTTCCGGAGCGCCAGATGCCAAAATTTCCGGAGCTGAGATGCCAAAATTTCCGGATGAGATGCCAAAATTTCCGGAGCGTGTATTGGCTGAGATGCCAAAATTTCCGGAGATGTATTGGCTGAGATGCCATGGATGTATTGGCTGAGATGCCAATATGGATGTATTGGCTGAGTTATGGATGTATTGGCTGATTTATGGATGTATTGGCTGAGATCTTTATGGATGTATTGGCTAAAAAAGGGCCTGCCTTTATGGATGTATTGTAAAAAAGGGCCTGCCTTTATGGATGTTTTGAATTGAGTAAAAAAGGGCTTTTGAATTGAGTAAAAAAGGGCCTGTATTTTGAATTGAGTAAAAAAGGGCCTTGAATATTTTGAATTGAGTAAAAAAGGGCCTGAGTTGAATATTTTGAATTCAGTTGAATATTTTGAATTGAGGAGGGCAGTTGAATATTTTGAATTGAGTAAAAGAGGGCAGTTGAATATTTTGAAAGAGGGCAGTTGAATATTTTGAATTCAGAGGGCAGTTGAATATTTTGAATACAGAGGGCAGTTGAATATTTTGAATTAACAGAGGGCAGTTGAATAATACAACAGAGGGCAGTTGAATGTGGAGATACAACAGAGGGCATCGATGTGGAGATACAACAGAGGGCTGTATCGATGTGGAGATAGAGTTGTATCGATGTGGAGATTGAGAGTTGTATCGATGTGGAGATCAGATATGAGAGTTGTATCGATTGGGCTGTATTTAAGAATTTGGGCTGTATTTAAGAAAAGTTTGGGCTGTATTTAAGAAAAGTTTGGGCTGTATTTAAAAGTTTGGGCTGTATTTAAGTTTGCAGTTCTGGATCCGGGGAAAAAAAAGTTTGGGCTGTATTTACAAAAAAAAGTTTGGGCTGCAAAAAAAAGTTTGGGCTCTGCAAAAAAAAGTTTGGGCCTGCAAAAAAAAGTTTGGGCTCTGCAAAAAAAAGTTTGGGCTGTATAACTGCAAAAAAAAGTTTGGGCTAGAACTGCAAAAAAAAGTTTGGGCTGCGGATCCAGAACTGCAAAAACGGATCCAGAACTGCAAAAAAAAGTCCCGGATCCAGAACTGCAAACCCGGATCCAGAACTGCAAAAACCCCGGATCCAGAACTGCAAAAACCCCCGGATCCAGAACTGCAACCCCCGGATCCAGAACTCAACCCCCGGATCCAGAACTGCAAAAATCAACCCCCGGATCCAGAACTTCAACCCCCGGATCCAGAACTGCACTCAACCCCCGGATCCAGAACTGCAAAAAAAAGAGTGAACTCTTTAGCATCTTACATGGCAAGTGAACTCTTTAGCATCTTACGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTGCAAGTGAACTCTTTAGCAAGTGCAAGTGAACTCTTTAGCCAGTGCAAGTGAACTCTTTAGCATCTGCAGTGCAAGTGAACTCTTTAGGCAGTGCAAGTGAACTCTTTAGCATCTCTGGATGCAGTGCAAGTGAACTCTTTCCTGGATGCAGTGCAAGTGAACTCCTGGATGCAGTGCAAGTGAACTCTACCTGGATGCAGTGCAAGTGAACTCTTTAGCAACCTGGATGCAGTGCAAGTGAACTCCAACCTGGATGCAGTGCAAGTGAACTCTTTAGAGACAACCTGGATGCAGTGCAAGTGAACTCCTAGACAACCTGGATGCAGAGCTAGACAACCTGGATGCAGTGCAAGTAGCTAGACAACCTGGATGCCTAGCTAGACAACCTGGATGTTCTAGCTAGACAACCTGGATGCAGTTATGGTCACCTTCTAGCTAGACATATTTTGGGGGAGTATGGTCACCTTCTAATTTCTTTCGGAATTTCAGAATGCTTATAATTTCTTTCGGAATATGCTGACAAAATCTTATCTGTTAGAGTTACTACCTTGCTACATCCTTCCTTAAGTTGTTGTTGATCCTTCCTTAAGTTGTTGTTAATCCTTCCTTAAGTTGTTGTAATCCTTCCTTAAGTTGTTGTTGCCAATCCTTCCTTAAGTTGTTGTTGACAATCCTTCCTTAAGTTGTTAACAATCCTTCCTTAAGTTGTAACAATCCTTCCTTAAGTTGTTGTTAAAACAATCCTTCCTTAAGTTAAAACTAAAACAATCCTTCCTATAAAACTAAAACAATCCTATAAAACTAAAACAATCCTTCCTATAAAACTAAAACAATCCTTCCTATATAAAACTAAAACAATCCTTAACATATAAAACTAAAACAGAGTTAACATATAAAACTAATTAACAACCAGAGTTAACAAATTAACAACCAGAGTTAACATAGATAAAATTAACAACCAGAGTTGATAAAATTAACAACCAGAGGTATCAGCCATGTGATAAAATAGAGTATCAGCCATGTGATAAAGAGTATCAGCCATGTGATAAACAGAGTATCAGCCATGTGACAGAGTATCAGCCATGTGATCAGAGTATCAGCCATGTGATAATCAGAGTATCAGCCATGTGTCAGAGTATCAGCCATGTGAATCAGAGTATCAGCCATGTGAAAATCAGAGTATCAGCCATGTCAAAATCAGAGTATCAGCCATCAAAATCAGAGTATCAGCCATGTCAAAATCAGAGTATCAGCCATGTTCAAAATCAGAGTATCAGCTGTTCAAAATCAGAGTATCAGCCTGTTCAAAATCAGAGTATCAGCCAGGAAGCCTTGTTCAAAATCAGATCGGAAGCCTTGTTCAAAATCTCGGAAGCCTTGTTCAAAATCAGACTTCGGAAGCCTTGTTCAAACTTCGGAAGCCTTGTTCAAAAAATAGAAACGAGTCGTTGCTTCGGAAGCCTTCTGACTTTAGGAAGCCTTGCTCTAAAGTCAGATCATTGGTCTCTCCCTAAAGTCAGATCATTGGTCCTTCCTAAAGTCAGATCATTTTATTTTGAGCAAGGCTTCTTATTTTGAGCAAGGCTTCCTTGATTCTATTATTTTGAGCAAGGCCTGATTCTATTATTTTGAGCAAGGCTGATTCTATTATTTTGAGCGCTGATTCTATTATTTTGAGCAAGTGGCTGATTCTATTATTTTGATGGCTGATTCTATTATTTTGAGTTGGCTGATTCTATTATTTTGTTGGCTGATTCTATTATTTTGAGTTGGCTGATTCTATTATTTTGAGCCTTGGCTGATTCTATTATTTTGCTTGGCTGATTCTATTATTTTGAGCACTTGGCTGATTCTATTATACTTGGCTGATTCTATTATTACTTGGCTGATTCTATTATTTTCACTTGGCTGATTCTATTATTTTGAGCATTTTATCACTTGGCTGATTCTAAATTTTATCACTTGGCTGTAAATTTTATCACTTGGCTGAGTAAATTTTATCACTTGGCTGTGGTAAATTTTATCACTTGGCTTGGTGGTAAATTTTATCACTTGGCGTGGTGGTAAATTTTATCACTTGTGGTGGTAAATTTTATCACAACTGTGGTGGTAAATTTTATCTAACTGTGGTGGTAAATTTTATAACTGTGGTGGTAAATTTTATCTAACTGTGGTGGTAAATTTTATCATTAACTGTGGTGGTAAATTTTTTAACTGTGGTGGTAAATTTTATTAACTGTGGTGGTAAATTTTATCACGTTAACTGTGGTGGTAAATTTTATCGGTTAACTGTGGTGGTAAATGGTTAACTGTGGTGGTAAATTGGTTAACTGTGGTGGTAAATTTTAGGTTAACTGTGGTGGTAAATTTTATCAGGTTAACTGTGGTGGTAAATTTTAGGTTAACTGTGGTGGTAAATTTTAAGGTTAACTGTGGTGGTAAATTTTATCCAGGTTAACTGTGGTGGTAAATTTTATCTTTACAGGTTAACTGTGGTGGTAATTGTTTTACAGGTTAACTGTGGTGTTTTGTTTTACAGGTTAACTTTTGTTTTACAGGTTAACTGTTTTGTTTTACAGGTTAACTGTGTTTTTGTTTTACAGGTTAACTGTAAGGAAGGTTTGTTTTTGTTTTCTTAAGGAAGGTTTGTTTTTGTTTACCTTAAGGAAGGTTTGTTTTACACCTTAAGGAAGGTTTGTTGATAACACCTTAAGGAAGGTTTGTAGATAACACCTTAAGGAAGGTTTGGACAAAATCGCAATACATGAGACTATGGGACAAAATCGCAATACATGTGGACAAAATCGCAATACATGATTGGACAAAATCGCAATACATGGAATATTTGGACAAAATCGCAATAAGAATATTTGGACAAAATCAGAGAATATTTGGACAAAATCAGAGAATATTTGGACAAAATCGCAATAGAGAATATTTGGACAAAATCGCAATACATGAGAAAGAGAATATTTGGACAAAAGAGAATATTTGGACAAAAAAGAGAATATTTGGACAAAATAAGAGAATATTTGGACAAAATCGCAATCAAGAGAATATTTGGACAAACAAGAGAATATTTGGACAAAACAAGAGAATATTTGGACAAAATCAAGAGAATATTTGGACAAAATCGCCAAGAGAATATTTGGACAAAATCGCAATACAGCAAGAGAATATTTGGACAAAATAGCAAGAGAATATTTGGACAGCAAGAGAATATTTGGACAAAAAGCAAGAGAATATTTGGACAAAAAGCAAGAGAATATTTGGACAAAATCAAAGCAAGAGAATATTTGGACAAAAGCAAGAGAATATTTGGACAAAAGCAAGAGAATATTTGGACACAAAAGCAAGAGAATATTTGGACCAAAAGCAAGAGAATATTTGGACAAAATTCAAAAGCAAGAGAATATTTGGACATCAAAAGCAAGAGAATATTTGGACAAAAGTCAAAAGCAAGAGAATATTTGGACCGCGTCAAAAGCAAGAGAATATTTGGACAAAACCTTACGCCGCGTCAAAAGCCCTTACGCCGCGTCAAAAGCAAGAGATTTGACCTGACAGCCTTACGCCATTTCTTTGACCTGACAGTTATTTGTTACAAACTGAACCTTGTAACAAATAATGAAGACCTGTTTCGTGTGGTTCAGTTTGTAACAAATATGGTTTCGTGTGGTTCAGTTTGTACATATGGTTTCGTGTGGTTAGCGATGACATATGGTTTCGGGGATTTTGTTAGCGATGACGGGGATTTTGTTAGCGATGACAGGGGATTTTGTTAGCGATGACATACTGGGGATTTTGTTAGCGACCTTGTCGATCAACTGAAGGGCTGGGGATTTTGTTAGCGATGACGGCTGGGGATTTTGTTAGCGATGACAACAAGGCTGGGGATTTTGTTAGCGATGACAGTTGATCGACAAGGCTGGGGAGTTGATCGACAAGGCTGGGGATTTTGTTACAGTTGATCGACAAGGCTGCTTCAGTTGATCGACAAGGCTGGGGCCTTCAGTTGATCGACAAGGCTTCCTTCAGTTGATCGACAAGGCTATCCTTCAGTTGATCGACAAGGCTGATCCTTCAGTTGATCGACAAGGCTTGATCCTTCAGTTGATCGACAAGGCTGGGGACCTTTAGATCCTTGCAAATCAACTGTATCATGGTGAGGATAACTCGATTGCTCCTGATCTATCATGTTGCTGAGAAGTTTGCTCCTTTGCTGAGAAGTTTGCTCCTGATCCTTGCTGAGAAGTTTGCTCCTGTCCTTGCTGAGAAGTTTGCTCCTCATGCGGGAAGAATTATCACTTTACATGGAAGCTAAAAATAAGGATTAAGTTGTGTAGTATATAGTCGAAGAGTTGCTGGGATATAGTCGAAGAGTTGCTGCAGAAGGATATAGTCGAAGAGTTGCTGTGTCAAATGCAAAGGATTGGGATGTGTGATGTGTCAATATGGGATGTGTGATGTGTCAAAGTGCTCTTGATTTATTATATTCGTAGGCGTGCTCTTGATTTATTATATGAACTTTCCTGCAGTATGAACCCGGATCAGTATCTCGTTACTGTTTGAAAGACCCTGACATCAGAAGAAGCATCAGTCTCAGATATATCATAAAGAAGCATCAGTCTCAGGGTCACAGATGTTCAAGATAGATGGTCACAGATGTTCAAGATATCAGCATCCGCGTCATATTTTCCTGTATATGACGCGGATGCTGATGGTTCACCAAGCCTAGATATCTGATAGGCTTGGTGAGATCTTGCATACCGATATCTGATGTTGGGCTCACAACATCAGATATCTAGGCTCCCAACATCAGATATCTAGGCTGAGCCCAACATCAGATATCTAGGCTTGGTGAGCCCAACATCAGATATCTAGGCTTGCGTGAGCCCAACATCAGATATCTAGGCTTGTATTTCTGTCCGTGAGCCTTATTTCTGTCCGTGAGCCTTTATTTCTGTCCGTGAGCCTTGGCAAGTTTATTTCTGTCCGTGAGCCTCTTGGCAAGTTTATTTCTGCACAGTGTGTTGCTCTTCTTGGCGATGTCACAGTGTGTTGCTCATGATGTCACAGTGTGTTGCTCGAAGGAAATGATGTCACAATGCTGAGAAGGAAATGATGTCCATCTTGATGCTGAGAAGGAATTTAGATGCTCTGCTTGAAGGTCAAAGCAGACTACTGATGTGTGTCTTTACAGGACGTTGAGCAGCTGTGCTGTTTGAAGCTCTATCCCTTCATGCTGTGCTGTTTGAAGCTCTTCATGCTGTGCTGTTTGAAGCTCTATCCCTGTCTCATGCTGTGCTGTTTGAAGCTCAACAATGCGTCTCATGCTGTGCTTAAAAACAATGCGTCTCATGCTGAATAAAAACAATGCGTCTCATGCTGTGCTGTGAATAAAAACAATGCGTCTCATGATGTGAATAAAAACAATGCGTATGTGAATAAAAACAATGCGTCTCAATCAATATTCGCTGAAGGACCTTCAGCGAATATTGATGGGGACAGATGTTGTGACTTCAGCGAATATTGATGTTGAAGATCCCAGTACCAGAAAAGCTCTGCAATGAGGGCTCTTCAATATTTTTAAGGCAATGAGGGCTCTTCAATATTTACAGGTTAAGGCAATGAGGAGTTAAAGATATCGTGGATCTGGAGCCAAGGAGATGGGATGGCATCCCATCTCCTTGGCTCCAGGTTTAGAACGCCTTGCTAGGAACCAAGATTAGAACGCCTTGCTAGGAACATTAGAACGCCTTGCTAGGAACCATATTAGAACGCCTTGCTAGGAACCATATTAGAACGCCTTGCTAGGAACCAAGATGTAATATTAGAACGCCTTGCTAGGAAAAATATTAGAACGCCTTGCAAATATTAGAACGCCTTGCTAGAAATATTAGAACGCCTTGCTAGGAACAAAATATTAGAACGCCTTGCTAGGAACAAAATATTAGAACGCCTTCAAAATATTAGAACGCCTTGCAAAATATTAGAACGCCTTGCTCAAAATATTAGAACGCCTTCAAAATATTAGAACGCCTTGTCAAAATATTAGAACGCCTTGCTAGTCAAAATATTAGAACGCCTTGCTAGGTGTCAAAATATTAGAACGCCTGTGTCAAAATATTAGAACGCCTGTGTCAAAATATTAGAACGCCTTGTGTCAAAATATTAGAACGCCTTGCATGTGTCAAAATATTAGAACGCCTTGCATGTGTCAAAATATTAGAACGCCTTGCTAGGAAATGTGTCAAAATATTAGAACGCCAAATGTGTCAAAATATTAGAACGCCTTGCTAGGATAAATGTGTCAAAATATTAGAACGCCTCTAAATGTGTCAAAATATTAGAACGCCTTGCCCTAAATGTGTCAAAATATTAGAACGCCGTCTACCTAAATGTGTCAAAATTACTCAAGTTGTCTACCTGAGGCGTACTCAAGTTGTCTATTGTAGCTCTGGTATCTACTTGTAGCTCTGGTATCTAATACTTGTAGCTCTGGTATCTAATAATCCTTCTTGTAGCTCTGGTATCCTTCTTGTAGCTCTGGTATCTAATTCTTCTTGTAGCTCTGGTATCTAATAGTCTTCTTGTAGCTCTGGTATCTAATAATTACGAGTCTTCTTGTAGCTCTGGCTTCTACGAGTCTTCTTGCTTCTACGAGTCTTCTTGTAGCTCGTCTTCTACGAGTCTTCTTGTAGCTCTGGCGTCTTCTACGAGTCTTCTTGTAGCTTGACGTCTTCTACGAGTCTTCTTGTAGTCTTGACGTCTTCTACGAGTCTTGACGTCTTCTACGAGTACGAGATCTTGGTGTCTTGACGAGATCTTGGTGTCTTGACAACGAGATCTTGGTGTCTTGGATGAACGAGATCTTGGTGTGGATGAACGAGATCTTGGTGTCTTTGGATGAACGAGATCTTGGTGTTTGGATGAACGAGATCTTGGTGTCTTTTGGATGAACGAGATCTTGGTGTCTTACTTTTGGATGAACGAGATCTTGGTGTCTTGAACTTTTGGATGAACGAGATCTTGGTGCACAACTTTTGGATGAACGAGATATGGCACAACTTTTGGATGAACGTATGGCACAACTTTTGGATGAACGAGATCTTGGGCGGATCGTATGGCACAACTTTTGGATGCGGATCGTATGGCACAACTTTTGGATGAACGGCGGATCGTATGGCACAACTCGTATACTTCCAGGGCGGATCGTATGGCATGCTGTCAACGTGGATGGCTGAAAAAATCCTGATGCTGTCAACGTGGATCCGAAAAAATCCTGATGCAGCAGCACTGTGCCTACTGCGCTTAAAGCAGCACTGTGCCTACTGCGCTTAAAGGAAAAAAGCAGCACTGTGTAAGGAAAAAAGCAGCACTGTAAGGAAAAAAGCAGCACTGTGCCTTTGTAAGGAAAAAAGCAGCACTGTGCCTACTTCTAGTAGTTGCAGACCTCTTGTATTTCTAGTAGTTGCAGACCATTTCTAGTAGTTGCAGACGATTTCTAGTAGTTGCAGACCTGAATCATTGGCACCTGCTGAATCATTGGCACCTGATCTGAATCATTGGCACCTGATGTTCAGCTGAATCATTGGCACCTGATGTTCAAAATGCTGAATCATTGGCACCTTGCTGAATCATTGGCACCTGATGTTGCTGAATCATTGGCACCTTTGCTGAATCATTGGCACCTGATTGCTGAATCATTGGCACCTGATTTGCTGAATCATTGGCACCTGATGTTCAAAATTTGCTGAATCATTGGCACCTTTGCTGAATCATTGGCACCTGATGTTTGCTGAATCATTGGCACCTGATGTTTTTGCTGAATCATTGGCACCTGATGTTTTGCTGAATCATTGGCACCTGATGTTCAAATTTTGCTGAATCATTGGCACCTGATGTTCAAAAATTTTGCTGAATCATTGGCACCTGATTTTGCTGAATCATTGGCACCTGAGGATTTTGCTGAATCATTGGCACCTAGGGATTTTGCTGAATCATTGGCACCTAGGGATTTTGCTGAATCATTGGCACCTGGGTGGAAGGGATTTTGCTGGGTGGAAGGGATTTTGCTGAATCATTGGCACCTGGAAATATCGGTGGAAGGGATTTTGCTGACTACAGGAGAACGTAAGCATGGCATTACGTTCTCCTGTAGGTCGGAATGAGACTTTCCAGTGCCTAGCACTGACCTTGGTCGGAATGAGACTTTCCAGTGCCTGGTCGGAATGAGACTTTCCAGTGCCTAGCACTTATTGGTCGGAATGAGACTTTCCAGTTTATTGGTCGGAATGAGATTATTGGTCGGAATGAGACTTTCCATATTATTGGTCGGAATGAGAGATATTATTGGTCGGAATGAGAACGATATTATTGGTCGGAATGAGAGAACGATATTATTGGTCGGAAGCGGAACGATATTATTGGTCGGAATGATACAGTGCGGAACGATATTATTGGAATAAATACAGTGCGGAACGAAGTTGGCAATAAATACTTTTGAAGTTGGCAATAAATACAGTTCTCATTGAGCAAGCAAGATGAATGAGAACCATGACTTTTTGAATGAGAACCATGACTTTTTGAAGTTGGCAATTGCTCAATGAGAACCATGACTTGGTTGGCTACATTGTTACATAGGTTGGCTACATTGTTACATCCAGGTTGGCTACATTGTTACATCACATCTTAGAAACTCTTAACAAGCACGAGTTACTTAGTAACATCTTAGAAACTCTAAGGCTAGGAGAAGATAATAGATGATGTGGATTTTGGCCATACGATGTGGATTTTGGCCATAACGATGTGGATTTTGGCCCTACGATGTGGATTTTGGCCATGCTACGATGTGGATTTTGGGGCTACGATGTGGATTTTGGCCTAGGCTACGATGTGGATTATATACATATGCTAGGCTATATGTCTGGAAAATGCTTTATAAAGAAATATGTCTGGAAAAAATCAAAGAGTTCTTGATTAAAGAACTCTTTGATTACTTGACATTCATCAAGAACTCTTTGATTAATCAAGAACTCTTTGATTAATCAAGAACTCTTTGATTTAGCAGGCCTGTAGTGGATCCTGTTCCATCTTACACGTAGCAGAGCTGTAGTTCGGTTATGTAGTGATGGTCCTGGCAGTAAATTCGGTTATGTAGTGATGTTACTGAATATATGATGACATAAGAATGTAGATGAAACAATGCTTCAAGAATGAGAAGGTTTCGTACATGCTTCAAGAATGAGAAGGTTCGTACATGCTTCAAGAATGAGAACGGAAACATTCGTACATGCTCGGAAACATTCGTACATGCTTCAACTCGGAAACATTCGTACATTAAGGAGCTCGGAAACATTCGTACATGCTATAAGGAGCTCGGAAACATTCGTACATAAGGAGCTCGGAAACATTCGTACATGCTTTGATAAGGAGCTCGGAAACATTCGTACAGTTGATAAGGAGCTCGGAAAAGTTGATAAGGAGCTCGGAAACATTCGTACCTACGAGTTGATAAGGAGCACTACGAGTTGATAAGGAGCTAGACTACGAGTTGATAAGGAGCTCGAGACTACGAGTTGATAAGGAGCTCAGAGACTACGAGTTGATAAGGAGCTCGGAGCGGAGAGACTACGAGTTGATAAGGAGCTAAGCGGAGAGACTACGAGTTGAGGAAGCGGAGAGACTACGAGTTGAAGGAAGCGGAGAGACTACGAACAAGGAAGCGGAGAGACTGAACAAGGAAGCGGAGAGACTACCCAGAACAAGGAAGCGGAGAGACTACTGCCAGAACAAGGAAGCGGAGAGACTACGACGACGTTCGTAATTGCCAGAACAAGGAATCAGCGACGTTCGTAATTGCCAGAACAGTATTTATCAGCGACGTTCGTATCCGTATTTATCAGCGACGTTCGTAATTCATGACCGGAATGAGAGGTCTCTCCGTATTTGAGGATTTGGTTCAACCATTTGAGGATTTGGTTCAACCGTGGATTTGAGGATTTGGTTCGGTGGATTTGAGGATTTGGTTCAACACACGGCGCAGATCCAAACTCTTTGGATCTGCGCCGTGTGAGGCGGCGAGTTTGGATCTGCGCCTAGTTAGATCCGGTGCCGCGTAGTTAGATCCGGTGCTAGTCTGTGGTTTATCTCGGCTTCAGCTTTAGTCTGTGTTATGCTTCAGCTTTAGTCTGTGCTCTCTCGAATTGCTTATGCTTCAGCAACGGAAAATGGCACCTTCAACCGTTTCTAGATTGGGATTCTCTCCTTTTGAATTTCTTCAAAAAAAAAAAGTTGGGAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAGTCGAAAAAAAAAAAAAAAACGAAAAAAAAAAAAAAAAAACGAAAAAAAAAAAAAAAClick to see list of reads 7,578,335 - 7,578,544 7,578,351 - 7,578,560 7,578,420 - 7,578,629 7,578,555 - 7,578,764 7,579,572 - 7,579,781 7,579,574 - 7,579,783 7,579,863 - 7,580,072 7,579,996 - 7,580,205 7,580,136 - 7,580,345 7,580,535 - 7,580,744 7,580,626 - 7,580,835 7,580,785 - 7,580,994 7,581,021 - 7,581,230 7,581,172 - 7,581,381 7,581,849 - 7,582,058 7,582,685 - 7,582,894 7,583,591 - 7,583,800 7,584,881 - 7,585,090 7,585,257 - 7,585,466 7,586,639 - 7,586,848 7,588,068 - 7,588,277 7,588,179 - 7,588,388 7,588,047 - 7,587,838 7,587,955 - 7,587,746 7,587,488 - 7,587,279 7,587,431 - 7,587,222 7,587,289 - 7,587,080 7,586,645 - 7,586,436 7,586,601 - 7,586,392 7,586,596 - 7,586,387 7,586,114 - 7,585,905 7,585,983 - 7,585,774 7,585,919 - 7,585,710 7,585,887 - 7,585,678 7,585,415 - 7,585,206 7,584,896 - 7,584,687 7,583,891 - 7,583,682 7,583,663 - 7,583,454 7,583,646 - 7,583,437 7,583,479 - 7,583,270 7,583,475 - 7,583,266 7,583,474 - 7,583,265 7,583,473 - 7,583,264 7,583,382 - 7,583,173 7,583,380 - 7,583,171 7,583,362 - 7,583,153 7,583,350 - 7,583,141 7,583,348 - 7,583,139 7,583,347 - 7,583,138 7,583,343 - 7,583,134 7,583,342 - 7,583,133 7,583,336 - 7,583,127 7,583,335 - 7,583,126 7,583,332 - 7,583,123 7,583,324 - 7,583,115 7,583,322 - 7,583,113 7,583,321 - 7,583,112 7,583,319 - 7,583,110 7,583,309 - 7,583,100 7,583,291 - 7,583,082 7,583,172 - 7,582,963 7,583,170 - 7,582,961 7,583,157 - 7,582,948 7,583,156 - 7,582,947 7,583,154 - 7,582,945 7,583,152 - 7,582,943 7,583,149 - 7,582,940 7,583,146 - 7,582,937 7,583,134 - 7,582,925 7,583,133 - 7,582,924 7,583,128 - 7,582,919 7,583,108 - 7,582,899 7,583,105 - 7,582,896 7,583,099 - 7,582,890 7,583,096 - 7,582,887 7,583,095 - 7,582,886 7,583,093 - 7,582,884 7,583,092 - 7,582,883 7,583,091 - 7,582,882 7,583,033 - 7,582,824 7,582,895 - 7,582,686 7,582,710 - 7,582,501 7,582,705 - 7,582,496 7,582,691 - 7,582,482 7,582,682 - 7,582,473 7,582,681 - 7,582,472 7,582,553 - 7,582,344 7,582,544 - 7,582,335 7,582,525 - 7,582,316 7,582,457 - 7,582,248 7,582,455 - 7,582,246 7,581,971 - 7,581,762 7,581,917 - 7,581,708 7,581,887 - 7,581,678 7,581,885 - 7,581,676 7,581,863 - 7,581,654 7,581,707 - 7,581,498 7,581,516 - 7,581,307 7,581,313 - 7,581,104 7,581,305 - 7,581,096 7,581,249 - 7,581,040 7,581,248 - 7,581,039 7,581,233 - 7,581,024 7,581,223 - 7,581,014 7,580,933 - 7,580,724 7,580,895 - 7,580,686 7,580,883 - 7,580,674 7,580,643 - 7,580,434 7,580,510 - 7,580,301 7,580,366 - 7,580,157 7,580,163 - 7,579,954 7,580,131 - 7,579,922 7,579,964 - 7,579,755 7,579,958 - 7,579,749 7,579,920 - 7,579,711 7,579,779 - 7,579,570 7,579,751 - 7,579,542 7,579,647 - 7,579,438 7,579,634 - 7,579,425 7,579,182 - 7,578,973 Click to see list of phasing windowsClick to see list of phasing windows
Gene map
Phasing analysis map
Phasing Analysis (above): Each dot represents a "window" of ten cycles of small RNAs of length 21 nt (where 21 is set in the control panel under Select phasing analysis options), with the score for the degree of phasing indicated on the Y axis (scores calculated approximately as described by Howell et al., 2007). The red dot is the highest scoring window and has the best score in this region. Other colored dots are windows which are in phase with the highest scoring window -- exactly-in-phase windows appear as filled dots, and almost-in-phase (-1/+1) windows as hollow dots. Only those reads corresponding to the featured length (the default length is 21 nt) are considered.

Gene Chr Strand Gene Type 5' End 3' End Model # of Splice Variants
AT5G22770 5 c protein-coding 7,588,249 7,579,263 2 2
    Predicted function: alpha-adaptin