N. benthi small RNA Gene Analysis

The basic information for the gene you have selected is displayed below. The "small RNA Information" section sums the reads that map to either strand of the gene of interest, indicating the total (normalized) read abundance, the count of distinct (different) sequences, and providing links to a downloadable file with that information, and web pages that provide detailed information on the complete set of individual sequences derived from the gene. View a legend that explains the icons and colors in the image below. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.



ACTAGTTGGATAGCTTATATAGCAAAGTATTATTATAAAGGATAATTAATTTTTCATGTTGTCTTATAACTTTAATATAATAGCTAAAATATATAATAGCTAAAATATATCAGAACAATTGTTATAAAAAGATTTGACTGATTGTTATAAAAAGATTTGACTGATTGTTATAAAAAGATTTGACTGTAATTTTGTTTGTTCTGATATATTTGTTATAAAAAGATTTGACTACAATTTTGTTTGTTCTGATATATAACAATTTTGTTTGTTCTGATATATAACAATTTTGTTTGTTCTGATGATTTGACTGTACAATCTTTTACTTTTGACTGTACAATCTTTTACTTTAGTCAAATCTTTTTATAACAGTAAAAGATTGTACAGTCAAATCATAGTAAGAGCAAAGTAAAAGATTATAGATAACCTGAATAACTATGTTAAACCAGGGGTGTTCATCGAGCGAAACCAGGGGTGTTCATCGAGCGATATATACCGTACCGCATCGCTCGATAATATCTATATACCGTACCGCATCAAATATCTATATACCGTACCGCATATGATTCGATTTTTCTCCTTATGATTTCCATTTATTCGGTCCAGAATCATAAGGAGAAAAATCGAATCAAATCATAAGGAGAAAAATCGAATCCATTTATTCGGTCCAGTAACTTCCATTTATTCGGTCCAGTAACTTCATTTATTCGGTCCAGTAACTTCGAATAAATGGAAATCATAAGGTTCGGTCCAGTAACTTCGATTTCGGTCCAGTAACTTCGATTTATTCGGTCCAGTAACTTCGATTTATTACCGAATAAATGGAAATCATAAGGTGGACCGAATAAATGGAAACTGGACCGAATAAATGGAAATCATGTAACTTCGATTTATTCGGTTTGATAACTTCGATTTATTCGGTAACTTCGATTTATTCGGTTTAACTTCGATTTATTCGGTTTGAAACTTCGATTTATTCGGTTTGAGTCTTCGATTTATTCGGTTTGAGTACTAAGTTACTGGACCGAATAAACGATTTATTCGGTTTGAGTACTAATATTCGGTTTGAGTACTAATTAGTGTAAATCGAAGTTACTGGACCGATAAATCGAAGTTACTGGACCAATAAATCGAAGTTACTGGACCGAATAAATCGAAGTTACTCGAATAAATCGAAGTTACTGGACACCGAATAAATCGAAGTTACACCGAATAAATCGAAGTTACTGGAAACCGAATAAATCGAAGTTACAACCGAATAAATCGAAGTTACTGGAAACCGAATAAATCGAAGTAAACCGAATAAATCGAAGTTACTGACTAATTAGTGCATAGAGTCATAGAGTGCATAGAGTCATAGACAGTGCATAGAGTCATAGACTAGTCATAGACTCTAATATTCTTAAAGTCTATGACTCTATGCAAGTCTATGACTCTATGCACAAGAATATTAGAGTCTATGACTATTAAGAATATTAGAGTCTGTCCAAAACTAGCAAATATCAACGTCCAAAACTAGCAAATATCAACCCAAAACTAGCAAATATCAACCCAAAAACTAGCAAATATCAACCATTTGCTAGTTTTGGACAAAATTTGCTAGTTTTGGACAAAATTTATTTGCTAGTTTTGGACAAAATATTTGCTAGTTTTGGACAATATTTGCTAGTTTTGGACAAATATTTGCTAGTTTTGGACAAAAATATTTGCTAGTTTTGGACAAAATTGATATTTGCTAGTTTTGGACATTGATATTTGCTAGTTTTGTTGATATTTGCTAGTTTTGGATTGATATTTGCTAGTTTTGGACATTGATATTTGCTAGTTTTGGACAAGTTGATATTTGCTAGTTTAAAAGAATATTTGATCATTAGAAAAAGAATATTTGATCATTAGAAAAAAGAATATTTGATCATTAGAAAAGAATATTTGATCATTAGAAAAAGAATATTTGATCATTAGAAAAAAGAATATTTGATCATTAGAAATAAGAATATTTGATCATTAGAAAGAATATTTGATCATTAGAAATAAGAATATTTGATCATTAGAAATGAGAATATTTGATCATTAGAAAAGAATATTTGATCATTAGAAATGTGTTTAGAGTTAATTGACGAAGTATAAAAGACCGATATCGTACCGGCCACTTCCGTTGTACCATACTGAATGTTGTTGTTGTTCCTTATAACTCTATAGAGTGGTTCCACAAGTGGGTGTGTGGAACCACTCTATATGAAAGAGGGTAGTGTGTATGACCTTTACACCCACTTGTGGAACCACTTACACACTACCCTCTTTACACCCACATACACACTACCCTCTTTACACCATAAGGTCATACACACTACCCTTACATTGTGAAAATATAGAGATTCTGAAAATATAGAGATTCTTTCCGACATATAGAGATTCTTTCCGACAGACATTTTCACAATGTAGGGATAAGGTATAGAGATTCTTTCCGACAGACTATAGAGATTCTTTCCGACAGACTCATATTTTCACAATGTAGGGATAAGGAGATTCTTTCCGACAGACTATTCTTTCCGACAGACTCTTGGCTTTCTTTCCGACAGACTCTTGGCTTCTTTCCGACAGACTCTTGGCTCTCTTTCCGACAGACTCTTGGCTCTTTCCGACAGACTCTTGGCTGACAGACTCTTGGCTCAAGAAAAGTACGTAAGACACTCTTGGCTCAAGAAAAGTACGTAAGAGTCTGTCGGAAAGAATCTCTCAAGAGTCTGTCGGAAAGAATCTCCAAGAGTCTGTCGGAAAGACCAAGAGTCTGTCGGAAAGAATCTGCTCAAGAAAAGTACGTAAGACAAGCCAAGAGTCTGTCGGAAAGAATCAGCCAAGAGTCTGTCGGAAAGAGCCAAGAGTCTGTCGGAAAGAAGCCAAGAGTCTGTCGGAAAGAATGAGCCAAGAGTCTGTCGGAAAGAAGAGCCAAGAGTCTGTCGGAAAGAATAAGAAAAGTACGTAAGACAAAGATGGTGAGCCAAGAGTCTGTCGGAAAGAAAAAGTACGTAAGACAAAGATGGCAAAGTACGTAAGACAAAGATGGCTACGTACTTTTCTTGAGCCAAGAGTACGTACTTTTCTTGAGCCAAGAGTCTGTCGGTACGTACTTTTCTTGAGCCCAAAGATGGCTGTCGTACATACTTTTGTCTTACGTACTTTTCTTGAGCCTTTGTCTTACGTACTTTTCTTGAGCCAATCTTTGTCTTACGTACTTTTCAGCCATCTTTGTCTTACGTACTTTAGCCATCTTTGTCTTACGTACTTTTCTTGAGCCAATGAAGCCAGGTGACTGATCATTAGATGAAGCCAGGTGACTGAGTGAAGTAGATGAAGCCAGGTAGTGAAGTAGATGAAGCCAGGTGACTGAAAGAGTGAAGTAGATGAAGCCAAAAGAGTGAAGTAGATGAAAAGAGTGAAGTAGATGAATCCCTACGTGCTGCTGATGGAACAGTTCAATTAGGATCCCTACGACACAAGCTCCAGTTCAATTAGGATAGTTGTGGGAACACAAGCTCCAGTATCGAGAAAGAGAAGGTGCAATCGAGAAAGAGAAGGTGCAGGTCAAGGAACAGATCGAGAAAGAGAAATATTTCTGGATCAAGGAACAGATCAGAATTACATATTTCTGGATCAAGGAACAGATCGGCCCAACCAAGCTTTTCCTCTTGGTTGGGCTCCTAGTATGCTTGGTTGGGCTCCTAGTGCTTGGTTGGGCTCCTAGTAAGCTTGGTTGGGCTCCTAAAAGCTTGGTTGGGCTCCTAGTAAAAGCTTGGTTGGGCTCCTAGTATGAAAAGCTTGGTTGGGCTCCAGGAAAAGCTTGGTTGGGCAGGAAAAGCTTGGTTGGGCTCACTCTTATCAAGGAAAAGCTTGGTTGGGCTCCTACTCCGACAACACTCTTATCCGTGGTCGAAACTCCGACAACGCGTGGTCGAAACTCCGACAACAAGGGTGTGCGTGGTCGAAACTCACCAGAGGGTGTGCGTGGTCGAAACTACATCCCCGGACCAGAGGGTGTGCGTGGTCGAATCACATCCCCGGACCAGATCACATCCCCGGACCAGAGATCACATCCCCGGACCAGAGGGTGTGCGTGGTCGTTGAGGACAAGAAGCTTCCCTTTGAGGACAAGAAGCTAGCTTTGAGGACAAGAAGAGCTTTGAGGACAAGAAGCTTCCTGATGGCGGAGATGGTCCTCAGCATGGCGGAGATGGTCCTCAGCTTTGAGGACAAGAATGAGATGGCGGAGATGGTCTGAATGAGATGGCGGAGATGGTCAGCATGAATGAGATGGCGGAGTGGTAAGCATGAATGAGATGGATGAGATGGTAAGCATGAATGAGATCGGAAGCGATGAGATGGTAAGCATCCAGTAAACATCGGAAGCGATGAGCCAGTAAACATCGGAAAATCAGACTTCAGAGAGCCAGTAAATCAGACTTCAGAGAGCCAGTAAACATCGCAAAATCAGACTTCAGAGAGCCAGTAAACATTAACAAAATCAGACTTCAGAGAGCCAGTAAACAATTTAGGTTAACAAAATCAGACTTAAGATTTCTGAGGTGCCACAAGATATTGATGAATGTGTTGAAGGCGACTCGATCTTTCACCTTCATTGAACTCGATCTTTCACCTTCATTGAAAGCAAACTCGATCTTTCACCTTCATGGAGATGGAAAGCAAACTCGAGATGTGGGGAGATGGAAAGCAATCGAGATGTGGGGAGATGGAAAGCATTCGAGATGTGGGGAGAATTCGAGATGTGGGGAGATGGAAATTCGAGATGTGGGGAGATGATAAATTCGAGATGTGGGGAGATGGAAAAAGCCCAAACTTCCGCTGATAAATTCGAGCTTTTTGTAGAAAAGCCCAAACAGCAGCTTTTTGTAGAAAAGGAAGTCATCAACTTTTTGTTTAAAACTACAGATTTATGGCCCATTTGGAACATGGAAAGGATAACATTTATGGCCCATTTGGATTGAATGTCGCATTGGACGTTTCCATAGAATTGAATGTCGCATTGGACACTTCGGAATTGAATGTCGCATTGGACTTACAACAAGGACTTCGGGCATTACAACAAGGACTTCGGAATTGAATGTCAGCATTACAACAAGGACTTCGGAAAAGCATTACAACAAGGACTTCGGAATTGAGTAAGCATTACAACAAGGACTTCGGAATTGAATGATGTAAGCATTACAACAAGGACTAGCTATGTAAGCATTACAACAAGGACTTCACAGAGGAGCTATGTAAGCATTACAACAAGAACAGAGGAGCTATGTAAGCATTAGAAAAACTGGCAACAGAGGAGCTATGTAAGCATATGGCTTAGAAAAACTGGCTGCTTATGGCTTAGAAAAACTGCAGGCCAAGCATCAGACTCCTTAGTCTGATGCTTGGCCTGCGGAGAGGAGTCTGATGCTTGGCCTGCGGAGAAGGAGTCTGATGCTTGGAAAGGAGTCTGATGCTTGGCCTGCGGATTAAAGGAGTCTGATGCTTGGCCTTAAAGGAGTCTGATGCTTGGCCTGCCAGCTTAAAGGAGTCTGATGCTTGGCACTAACGTCAGCTTAAAGGAGTCTGAACTAACGTCAGCTTAAAGGAGGTTGGAAACTAACGTCAGCTAGCAGTTGGAAACTAACGTCAAAGCAGTTGGAAACTAACGTAAGCAGTTGGAAACTAACGTCATTTAAGCAGTTGGAAACTAACTTTAAGCAGTTGGAAACTAACGTCAGCTCTGAATTTAAGCAGTTGGAAACATGCGTCCAGTGCTTGCATCTACCCTAGAATTTGAACTTGTGACTCAAGGCGCCAGTGATTCTTGAAGCCTATGGAGGCTTCAAGAATCACTGGCGTTAAGCTGATGGAGGCTTCAAGAATCACACATGATGGAGGCTTCAAGAATCACTTATGATCAGCTTTAACATGATACACTATGATCAGCTTTAACAACACTATGATCAGCTTTAAACAACACTATGATCAGCAACAACACTATGATCAGCTTTATAACAACACTATGATCAGCTTTAACATGATGGAGAGTGGTTGGACTGAATGAAGAGTGGTTGGACTGAATGAAGCCTCGGTGATCATGTATAACAACCACTCGGTGATCATGTATAACAACACTACCACTCGGTGATCATGTATAACAAACCACTCGGTGATCATGTATAACAACACTATGGGAGGTATGGGCTTCATTCATGGGAGGTATGGGCTTCATTCAGTCCAGATATGGGAGGTATGGGCATCATGTGTTCAATCTCGCTGCCGATTGATCATGTGTTCAATCTCGCTGCCGAACAAAAGGAGTTGATCATGTGTTCAATCTCGCTGAGTCACAAAAGGAGTTGATCAAGTCACAAAAGGAGTTGATCATGTGTTCAATCTAAAGTCACAAAAGGAGTTGATCATGTACTGTTTGAAAGTCACAAAAGGAGTTGAAACTGTTTGAAAGTCACAAAAAGGGTTATGGATAACTGTTTGAAAGTCACTCTCAGGGTTATGGATAACTGATCTCAGGGTTATGGATGTTCCATCTTGTTGATCTCAGGGAGTTCCATCTTGTTGATCTCAGGGTACGAGTTCCATCTTGTTGATCTCAGGGTTATGGCACGAGTTCCATCTTGTTGATCTCAGGGTTCTGTCACGAGTTCCATCTTGTAGGACATGTTCTGTCACGAGTTCCGCATATGTCTGAGGACATGATGAGCATATGTCTGAGGACATGTTCTGTCACGAAAGAATGAGCATATGTCTGAGGACATGTTGAAGAAGAATGAGCATATGTCTGAGTCTGACTGGAAGAAGAATGAGCATTATTGCTTCTGACTGGAAGAAGAACATTATTGCTTCTGACTGCTGAAGACTGAGGGGCATTACATTATTGCTGTCTGAAGACTGAGGGGCATTAGGCGTCTGAAGACTGAGGGGCATTAGGCGTCTGAAGACTGAGGGGCATTCAAGGCGTCTGAAGACTGAGGGGCATTACATTATATTGCAAGGCGTCTGAAGACTGAGGGGCATTCATTGCAAGGCGTCTGAAGACCATTGCAAGGCGTCTGAAGACTGAGGACATTGCAAGGCGTCTGAAGACACATTGCAAGGCGTCTGAAGACTACATTGCAAGGCGTCTGAAGACTGACACATTGCAAGGCGTCTGAAGACACATTGCAAGGCGTCTGAAGACTCAATAAATCCACCAGCTCCTGTGAGAGGGAACCCTACTGGCCTTTGAGAGGGAACCCTACTGGCCTATGAGAACCTTGAGAGGGAAATGAGAACCTTGAGAGGGAACCCTACTATGAGAACCTTGAGAGGGAACCCTACACATATGAGAACCTTGAGAGGGAACCCATACACATATGAGAACCTTGAGAGAGAATACACATATGAGAACCTTGAGAGGATGGAGAATACACATATGAGAACCTTGATTTTAACACGTGCTTTGCCTCTATGCCTTGTGCACCAGACGATGCCTTGTGCACCAGAGTGACTCTGTGACCGCAGGATGCCGCACCCCAAGGGGTGTGATGCACCCCAAGGGGTGTGATGTAGACACCCCAAGGGGTGTGATGTAGACACCCCAAGGGGTGTGATGTAGACACCAAGGGGTGTGATGTAGACAACCCAAGGGGTGTGATGTAGACAACCAAGGGGTGTGATGTAGACAACCCAAGGGGTGTGATGTAGACAACCTAAGGGGTGTGATGTAGACAACCAAGGGGTGTGATGTAGACAACCTAAGGGGTGTGATGTAGACAACCTAAGGGGTGTGATGTAGACAACAGGGGTGTGATGTAGACAACCAGGGGTGTGATGTAGACAACCTAGGGGTGTGATGTAGACAACCTAGGGGTGTGATGTAGACAACGGGGTGTGATGTAGACAACCGGGGTGTGATGTAGACAACCTGGGGTGTGATGTAGACAACCTACCGGGTGTGATGTAGACAACCTGGGTGTGATGTAGACAACCTACCGGGTGTGATGTAGACAACCTACCCGGGTGTGATGTAGACAACCTACCCTGGTGTGATGTAGACAACCTACGGTGTGATGTAGACAACCTACCCGGTGTGATGTAGACAACCTACCCTGTGTGATGTAGACAACCTACCGTGTGATGTAGACAACCTACCCGTGTGATGTAGACAACCTACCCTTGTGATGTAGACAACCTACCCTGTGATGTAGACAACCTACCCTGTGATGTAGACAACCTACCCTGTGATGTAGACAACCTACCCTAATTGATGTAGACAACCTACCCTTGATGTAGACAACCTACCCTAATGTAGACAACCTACCCTAATATAATCACACCCCTTGGGGTGCGGCTCTGTAGACAACCTACCCTAATCATCACACCCCTTGGGGTGCGGCTCACATCACACCCCTTGGGGTGCGGCAGACAACCTACCCTAATATATCTACATCACACCCCTTGGGGGTCTACATCACACCCCTTGGGGTTGTCTACATCACACCCCTTGGGAGGTTGTCTACATCACACCCCTGGTAGGTTGTCTACATCACACCCCAGGGTAGGTTGTCTACATCACACCTAGGGTAGGTTGTCTACATCATTAGGGTAGGTTGTCTACATTAGGGTAGGTTGTCTACATCATTAGGGTAGGTTGTCTACATCAATTAGGGTAGGTTGTCTACATCACTATTAGGGTAGGTTGTCTACAATATTAGGGTAGGTTGTCTATATTAGGGTAGGTTGTCTACATCTATATTAGGGTAGGTTGTCTTTATATTAGGGTAGGTTGTCTACAATGTTTATATTAGGGTAGGTTGTACTAATGTTTATATTAGGGTAGGTACTAATGTTTATATTAGGGTAGGTTGATGTCTTTAGACTTGTTGTTTCACTCGAAGTTGCTCGTGTTAGACTTAACGGTAGGGGTAAGGTGTAGATTTGGACCTTTTTCTCGAAGAAGAATTTGAACACTTGGAGTCGAAGAATTTGAACACTTGGAGTCCATATCATCCGAAGAAACAGATATCATCCGAAGAAACAGAAAATATCATCCGAAGAAACAGAAAATACATCATCCGAAGAAACAGAAAATACCCAGAAAATACCAAAAAGTTCGAGAAAATACCAAAAAGTTCGAATTGAAAATACCAAAAAGTTCGAATTAAAATACCAAAAAGTTCGAATAAAATACCAAAAAGTTCGAATTTCTGTTTCTTCGGATGATATGTTCTGTTTCTTCGGATGATATATTTTCTGTTTCTTCGGATGATATTTTCTGTTTCTTCGGATGTTGGTATTTTCTGTTTCTTTTGGTATTTTCTGTTTCTTCGGATTTTGGTATTTTCTGTTTCTTTTGGTATTTTCTGTTTCTTTTTTGGTATTTTCTGTTTCTTTTTTTGGTATTTTCTGTTTTTTTTGGTATTTTCTGTTTCTTCTTTTTGGTATTTTCTGTCTTTTTGGTATTTTCTGTTTCTTACTTTTTGGTATTTTCTGTTACTTTTTGGTATTTTCTGTTTCTTAACTTTTTGGTATTTTCTGAACTTTTTGGTATTTTCTGTTTCTTGAACTTTTTGGTATTTTCTGTCGAACTTTTTGGTATTTTCTATTCGAACTTTTTGGTATTTTATTCGAACTTTTTGGTATTTTCTGAATTCGAACTTTTTGGTATTTTCTGTTTCTTAATTCGAACTTTTTGGTATTTTCTGTTTCTTCTGAATTCGAACTTTTTGGTATTTTCTGTTTTGTGAATTCGAACTTTTTGGTATTTTCTGTAATAACATTGATTCAATTGGCAAGAGAAAAGAACAAAAAGTGGACCTGTGTCGAAGGAGATGGCACAGGTCCAATTTCTTCAAGAAGGAGATGGCGAAGCTCAATGATTCATTGAGCTTCGCCATCTCATTGAGCTTCGCCATCTCCTTCGACAATCAGAGATCTGTTACACAAAATTATAAATCAGAGATCTGTTACACAAATATAAATCAGAGATCTGTTATAACACAGAAATATAGTCGGTTTAAACTTTCCATCAAATCTCAATCAAATCTCACGTTAAGACGATAAAATAAATCTCGAACCGATATATAAAATAAATCTCGAACCGATCTTTTAGGGTGTTTTGTTAGGAACACCCTAAAAGATTTAATAAACTAAAAGAGCAAGATAACTAATTCTGAAATACTAACAATTCCAGCTAACTTACTAACAATTCCAGCTAACTAATACTAACAATTCCAGCTAACTAATCAATTCCAGCTAACTAATCCCGAATTCCAGCTAACTAATCCCGAAATTCCAGCTAACTAATCCCGAAAACTAATCCCGAAATTAATTGTATCAATCCCGAAATTAATTGTATCATGCGAAATTAATTGTATCATGGGGATTAGTTAGCTGGAATTGTAATTTCGGGATTAGTTAGCAATTTCGGGATTAGTTAGCTGGATTGTATCATGATTTTATTCCAACATTAATTTCGGGATTAGTTAGCTGAATTAATTTCGGGATTAGTAATTAATTTCGGGATTAGTTAGCTATCATGATTTTATTCCAACTAAACCATGATTTTATTCCAACTAAACGTGATACAATTAATTTCGGGATTAGTATGATACAATTAATTTCGGGATTATGATACAATTAATTTCGGGATTAATGATACAATTAATTTCGGGATTAGATCATGATACAATTAATTTCGGGAAAATCATGATACAATTAATTTAACTAAACGTGGAACAAACTCATCAACTAAACGTGGAACAAACTCATCTTTAGTTGGAATAAAATCATGATAACGTGGAACAAACTCATCTCAATTCGTTTAGTTGGAATAAAATCATAACAAACTCATCTCAATTTAATTACAAACTCATCTCAATTTAATTCTAGATGAGTTTGTTCCACGTTTAGAGATGAGTTTGTTCCACGTTTAGTGAGATGAGTTTGTTCCACGTAATTTAATTCTTTATCCCTCGTACATTTAATTCTTTATCCCTCGTACCATTGAGATGAGTTTGTTCCACGTTATTCTTTATCCCTCGTACCAAAATTCTTTATCCCTCGTACCAAACATTCTTTATCCCTCGTACCAAACGAGAATTAAATTGAGATGAGTTTGTGAGGGATAAAGAATTAAATTGAGACGAGGGATAAAGAATTAAATTGTACGAGGGATAAAGAATTAAATTTTGGTACGAGGGATAAAGAATTTGGTACGAGGGATAAAGAATTTTGGTACGAGGGATAAAGAATTATTTGGTACGAGGGATAAAGTTTGGTACGAGGGATAAAGATTTGGTACGAGGGATAAAGAATGTTTGGTACGAGGGATAAAGAATTATATTAAAAACTCGTTTGGTACATATATTAAAAACTCGTTTGGTACClick to see list of reads
Gene map

Gene Chr Strand Gene Type 5' End 3' End Model # of Splice Variants
NbL11g20910 11 c protein-coding 115,045,889 115,041,273 1 No splice variant annotated
    Predicted function: Nicotiana attenuata GDP-mannose 3,5-epimerase 1 (LOC109220842), mRNA (XM_019385307.1,XP_019240852.1)

small RNA Information

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View data on the reads associated with this gene