Rice small RNA Information



Reads existing in this region (Chr 1, 20,108,126 - 20,108,587):  1 - 141 of 141      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorG1_5G6_10AGO1a_IPAGO1b_IPAGO1c_IPAGO_CTAGO4a_IPAGO4b_IPAGO16_IPdcl1_sdldcl3_sdlrdr2_sdlwt_sdlME5aPxo99aOsMockLeafRootBCPCallusTCPUNMLACt1La706La706cLros1bLOsNpbOsTCP_brdr6_HTrdr6_LTzh_HTzh_LT704f704s9311f 9311s waf1-1waf1-2Wt_waf1-1Wt_waf1-2Wt_HEN1bSeg_Wt_HEN1bOs hen1-358N_158S_1total_mel1total_WTMEL1IP_WTMEL1IP_mel1WTLamina3A1Lamina3A3Lamina
Signature abundances normalized to (varies by library depth): Separator2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M10M10M10M10M2M2M2M2M5M5M5M5M5M5M5M2M2M5M5M5M5M8M8M8M
1TCATTTTTAGTTAGTATTTCA120,108,159c21Separator0000000000000000000000000000001000000000000000000000
2TAGTGGTATAATGGAAATT120,108,162w19Separator0000000000000000000000000000001000000000000000000000
3TAGTGGTATAATGGAAATTTC120,108,162w21Separator0000000000000000000000000000000000000000000000200000
4TTTCTGATAGATAAGCACGGC120,108,179w21Separator0000000000000000000000000002001000100000000001000000
5TTTCTGATAGATAAGCACGGCT120,108,179w22Separator0000000000000000000000000000000000100000000000000000
6TTCTGATAGATAAGCACGGCT120,108,180w21Separator0000000000000000000001000000000000000000000000000000
7TTCTGATAGATAAGCACGGCTGAA120,108,180w24Separator0000000000000000000000000000001000000000000000100000
8TCTGATAGATAAGCACGGCTG120,108,181w21Separator0000000000000000000000000000000000000000000001000000
9CTGATAGATAAGCACGGCTGA120,108,182w21Separator0000000000000000000000000000000000000000000000010000
10TGATAGATAAGCACGGCTGA120,108,183w20Separator0000000000000000000000000000013400000000000000000000
11TGATAGATAAGCACGGCTGAA120,108,183w21Separator0000000000000000000001000000067144147000000000001161610000
12GATAGATAAGCACGGCTGAA120,108,184w20Separator0000000000000000000000000000002100000000000000000000
13TTATCTATCAGAAATTTCCAT120,108,192c21Separator0000000000000000000000000000000000000000000000100000
14ACGGCTGAAAGCGCTAAGAAC120,108,195w21Separator0000000000000000000000000000000000000000000004000000
15AGCGCTAAGAACACAACATAT120,108,204w21Separator0000000000000000000000000000002000000000000001000000
16CACAACATATATATGCCT120,108,215w18Separator0000000000000000000000000000000100000000000000000000
17ACAACATATATATGCCTG120,108,216w18Separator0000000000000000000000000000000100000000000000000000
18ACAACATATATATGCCTGTAG120,108,216w21Separator0000000000000000000000000000000000000000000001000000
19ATATGCCTGTAGCTTATTTG120,108,225w20Separator0000000000000000000000000000010000000000000000000000
20ATATGCCTGTAGCTTATTTGA120,108,225w21Separator0000000000000000000011000000078900000000000003000000
21CAGGCATATATATGTTGTGTT120,108,233c21Separator0000000000000000000000000000010000000000000000000000
22AAATAAGCTACAGGCATATAT120,108,243c21Separator0000000000000000000000000000000100000000000000000000
23AGCTGCTAGTATATATATGT120,108,245w20Separator0000000000000000000000000000000100000000000000000000
24AGCTGCTAGTATATATATGTT120,108,245w21Separator0000000000000000000000000000010000000000000000000000
25GCTGCTAGTATATATATGTTG120,108,246w21Separator0000000000000000000000000000001000000000000000000000
26TATATATATGTTGGGCTCGGC120,108,254w21Separator0000000000000000000000000000001000000000000000000000
27CATATATATACTAGCAGC120,108,263c18Separator0000000000000000000000000000002000000000000000000000
28ACATATATATACTAGCAG120,108,264c18Separator0000000000000000000000000000012100000000000000000000
29ACATATATATACTAGCAGC120,108,264c19Separator0000000000000000000000000000001100000000000000000000
30ACATATATATACTAGCAGCT120,108,264c20Separator0000000000000000000000000000011000000000000000000000
31ACATATATATACTAGCAGCTC120,108,264c21Separator0000000000000000000000000000010300000000000000000000
32TCGGCCTGTTAATTAAACTGC120,108,270w21Separator0000000000000000000000000000000000000000000000100000
33TAATCAGTAATCAGCTAATTTA120,108,304w22Separator0000000000000000000000000000010000000000000000000000
34TTAACCATATAATTAAGCAGT120,108,306c21Separator0000000000000000000000000000011100000000000000000000
35TAATTTATTGGACTAATCAGC120,108,319w21Separator0000000000000000000000000000000000000000000001000000
36AATAAATTAGCTGATTACT120,108,327c19Separator0000000000000000000000000000000100000000000000000000
37AATAAATTAGCTGATTACTGA120,108,327c21Separator0000000000000000000000000000000200000000000000100000
38ACTAATCAGCCGTTTTTGCGT120,108,330w21Separator0000000000000000000000000000001000000000000000000000
39CAAAAACGGCTGATTAGTCCA120,108,347c21Separator0000000000000000000000000000010000000000000000010000
40GCAAAAACGGCTGATTAG120,108,348c18Separator0000000000000000000000000000020000000000000000000000
41GCAAAAACGGCTGATTAGT120,108,348c19Separator0000000000000000000000000000001000000000000000000000
42GCAAAAACGGCTGATTAGTCC120,108,348c21Separator00000000000000000000000000000781900000000000000000000
43TCATGAAAAGGAAAACCATTC120,108,351w21Separator0000000000000000000000000000000000000000000000100000
44TTTCATGAACGCAAAAACGGC120,108,358c21Separator0000000000000000000000000000000000000000000000200000
45AGGAAAACCATTCTGAACTGC120,108,359w21Separator0000000000000000000000000000000000000000000001000000
46TTTTCATGAACGCAAAAACGG120,108,359c21Separator0000000000000000000000000000000000000000000005200000
47AAAACCATTCTGAACTGCATG120,108,362w21Separator0000000000000000000000000000000100000000000000000000
48AAAACCATTCTGAACTGCATGTTC120,108,362w24Separator0000000000000000000000000000000100000000000000000000
49TTCTGAACTGCATGTTCATGTGGG120,108,369w24Separator0000000000000000000000000000000000000000000000100000
50TGAACTGCATGTTCATGTGGG120,108,372w21Separator0000000000000000000000000000000100000000000001300000
51CACATGAACATGCAGTTCAGA120,108,390c21Separator0000000000000000000000000000000100100000000000000000
52TTTTTTTGTTGCTGACACCGA120,108,393w21Separator0000000000000000000000000000022400000000000000100000
53ATAGTCGGCTGATGCGGCCGT120,108,414w21Separator0000000000000000000000000000000000000000000000100000
54GGCCGCATCAGCCGACTATTC120,108,432c21Separator0000000000000000000000000000000000000000000001000000
55CTTTTTGTACAATGGTTCCA120,108,435w20Separator0000000000000000000000000000000000000000000000010000
56CTTTTTGTACAATGGTTCCAT120,108,435w21Separator0000000000000000000000000000000000000000000000040000
57GGAACCATTGTACAAAAAGAC120,108,453c21Separator0000000000000000000000000000000000000000000006300000
58CAGCTCAAATTCCTAATG120,108,456w18Separator0000000000000000000000000000000000000000000000100000
59CTCAAATTCCTAATGCAGCTC120,108,459w21Separator0000000000000000000000000000000000000000000000010000
60TAGGAATTTGAGCTGATGGAA120,108,470c21Separator0000000000000000000000000000001000000000000000000000
61TTAGGAATTTGAGCTGATGGA120,108,471c21Separator0000000000000000000000000000002100000000000000000000
62GCATTAGGAATTTGAGCTGAT120,108,474c21Separator0000000000000000000000000000002100000000000001400000
63TGAGCTGCATTAGGAATTTGA120,108,480c21Separator0000000000000000000000000000000100000000000000000000
64CGGGATTGAGCTGCATTAG120,108,486c19Separator0000000000000000000000000000000000000000000000010000
65CGGGATTGAGCTGCATTAGGA120,108,486c21Separator0000000000000000000000000000001000000000000000030000
66TGAGATATGTCACGGGATT120,108,498c19Separator0000000000000000000000000000000100000000000000000000
67AACGTTGAGATATGTCACGGG120,108,503c21Separator0000000000000000000000000000000000000000000001000000
68ATTTATAATCGATTGCCTCTTA120,108,531w22Separator0000000000000000000000000000000000000000000100000000
69AATCGATTGCCTCTTACATACTCA120,108,537w24Separator0000000000000000000000000000001000000000000000000000
70TTACATACTCACATCTTTCGTCGG120,108,550w24Separator0000000000000000000000000000000000000000000010000000
71TACATACTCACATCTTTCGTC120,108,551w21Separator0000000000000000000000000000000000000000000000000001
72ACATACTCACATCTTTCGTCGGTC120,108,552w24Separator0000000000000000000000100000001100000000000110000100
73ATACTCACATCTTTCGTCGGTCG120,108,554w23Separator0000000000000000000000000000000000000000000010000000
74ACTCACATCTTTCGTCGGTCGGA120,108,556w23Separator0000000000000000000000000000000000000000000110000000
75ACTCACATCTTTCGTCGGTCGGAC120,108,556w24Separator0000000000000000000000000000001000000000000010000000
76TATGTAAGAGGCAATCGATTA120,108,556c21Separator0000000000000000000000000000000000000000000000000010
77CTCACATCTTTCGTCGGTCGGAC120,108,557w23Separator0000000000000000000000000000000000000000000000000000
78TCACATCTTTCGTCGGTCGGACGA120,108,558w24Separator0000000000000000000000000000000000000000000000000001
79ACATCTTTCGTCGGTCGGA120,108,560w19Separator0000000000000000000000000000000000000000000000000010
80ACATCTTTCGTCGGTCGGACGAAT120,108,560w24Separator0000000000000000000000000000000000000000000100000000
81CATCTTTCGTCGGTCGGACGAA220,108,561w22Separator0000000000000000000000000000000000000001000000000000
82GTGAGTATGTAAGAGGCAATCGA120,108,561c23Separator0000000000000000000000000010000000000000000000000000
83ATCTTTCGTCGGTCGGACGAATT220,108,562w23Separator0000000000000000000000000000000000000000000000000011
84ATCTTTCGTCGGTCGGACGAATTC220,108,562w24Separator0000000000000000000000000000000000000010000000000000
85TGTGAGTATGTAAGAGGCAA120,108,562c20Separator0000000000000000000000000000100000000000000000000000
86TGTGAGTATGTAAGAGGCAAT120,108,562c21Separator0000000000000000000000000000000000000000000010000000
87ATGTGAGTATGTAAGAGGCAAT120,108,563c22Separator0000000000000000000000000000000000000000000100000000
88TCTTTCGTCGGTCGGACGAAT220,108,563w21Separator0000000000000000000000100000000000000000000000000000
89TCTTTCGTCGGTCGGACGAATTC220,108,563w23Separator0000000000000000000000000000000000001000000000000000
90AAAGATGTGAGTATGTAAGAGGCA120,108,567c24Separator0000000000000000000100000000000000000000000000000000
91GAAAGATGTGAGTATGTAAGAGGC120,108,568c24Separator0000000000000000000000000000001000000000000000000001
92GTCGGTCGGACGAATTCCACAATAGT220,108,569w26Separator0000000000000000000000000000000000000000000000000011
93ACGAAAGATGTGAGTATGTAAGAG120,108,570c24Separator0000000000000000000000000000000000000000000100000000
94CGGTCGGACGAATTCCACAATAGT220,108,571w24Separator0000000000000000000000000000010000000000000000000000
95GACCGACGAAAGATGTGAGTATGT120,108,575c24Separator0000010000000000000000000000000000000000000000000000
96CCGACCGACGAAAGATGTGA120,108,577c20Separator0000000000000000000000000000100000000000000000000000
97CCGACCGACGAAAGATGTGAGTAT120,108,577c24Separator0000000000000000000000000000201200000000000000000000
98GACGAATTCCACAATAGTCCCGGT220,108,577w24Separator0000000000000000000000000000000000000000000010000000
99ACGAATTCCACAATAGTCCCGGTT220,108,578w24Separator0000001000000000000000000000000000000000000000000000
100TCCGACCGACGAAAGATGTGAG120,108,578c22Separator0000000000000000000000000000100000000000000000000000
101TCCGACCGACGAAAGATGTGAGT120,108,578c23Separator0000000000000000000000000000000000000000000010000000
102TCCGACCGACGAAAGATGTGAGTA120,108,578c24Separator0000000000000000000000000000001000000000000000000000
103CGAATTCCACAATAGTCCCG8120,108,579w20Separator0000000000000000000000000000000000000000000000000001
104CGAATTCCACAATAGTCCCGG7920,108,579w21Separator00000000000000000000000000000000000000000000011210113
105CGAATTCCACAATAGTCCCGGT3620,108,579w22Separator0000000001000000000000000000000000000000000000010124
106CGAATTCCACAATAGTCCCGGTT3620,108,579w23Separator0000000000000000000000000000520200110000000110000111
107GTCCGACCGACGAAAGATGTGAGT120,108,579c24Separator0000000000000000000000000000000000000000000000100000
108GAATTCCACAATAGTCCC8620,108,580w18Separator0000000000000000000100000000000000000000000000000000
109GAATTCCACAATAGTCCCGG8220,108,580w20Separator0000000001000000000000000000000000000000000000000121
110GAATTCCACAATAGTCCCGGT3720,108,580w21Separator0000000000000000000000000000000000000000000000000011
111GAATTCCACAATAGTCCCGGTT3720,108,580w22Separator0000000000000000000000000000200000000000000100000021
112GAATTCCACAATAGTCCCGGTTA620,108,580w23Separator0000000000000000000000000000000000000000000010000010
113GAATTCCACAATAGTCCCGGTTAC620,108,580w24Separator0000000101000000000000000000010000000000000010000000
114AATTCCACAATAGTCCCGG16620,108,581w19Separator0000000000000000000000000000000000000000000100000011
115AATTCCACAATAGTCCCGGT11320,108,581w20Separator0000000000000000000000000000000000000000000000100011
116AATTCCACAATAGTCCCGGTT11320,108,581w21Separator0000000000000000001001000000113200010000000110000011
117AATTCCACAATAGTCCCGGTTA920,108,581w22Separator0000000000000000000000000000000000000000000100000022
118AATTCCACAATAGTCCCGGTTACA920,108,581w24Separator0000000000000000000000000000000000000000000000000100
119ATTCCACAATAGTCCCGGT11420,108,582w19Separator0000000001000000000000000000001000000000000100000010
120ATTCCACAATAGTCCCGGTT11420,108,582w20Separator0000000000000000000000000000000000000000000000000001
121ATTCCACAATAGTCCCGGTTA920,108,582w21Separator0000000000000000000000000000000000000000000000000001
122ATTCCACAATAGTCCCGGTTAC920,108,582w22Separator0000000000000000000000000000000000000000000000000001
123ATTCCACAATAGTCCCGGTTACAA920,108,582w24Separator0000001000000000000000100000001000000000000000000000
124ATTCCACAATAGTCCCGGTTACAATA820,108,582w26Separator0000000000000000000000000000000000000000000010000000
125TTCGTCCGACCGACGAAAGATGTG120,108,582c24Separator0000000000000000000000000000000000000010000000000000
126ATTCGTCCGACCGACGAAAGATGT120,108,583c24Separator0000000010000000000000100000000000000011110000000000
127TTCCACAATAGTCCCGGTT16520,108,583w19Separator0000000000000000000000000000000000000000000000000001
128TTCCACAATAGTCCCGGTTAC1020,108,583w21Separator0000000000000000000000000000000000000000000000000010
129TTCCACAATAGTCCCGGTTACA1020,108,583w22Separator0000000000000000000000000000000000000000000000000100
130TCCACAATAGTCCCGGTT29520,108,584w18Separator0000000000100000000000000000000000000000000000000000
131TCCACAATAGTCCCGGTTACAA1620,108,584w22Separator0000000000000000000000000010000000000000000000000011
132CCACAATAGTCCCGGTTACAATAA1320,108,585w24Separator0000000000000000000000000000100000000000000000000000
133CACAATAGTCCCGGTTACAAT1420,108,586w21Separator0000000000000000000000000000000000000000000000000001
134CACAATAGTCCCGGTTACAATA1420,108,586w22Separator0000000000000000000000000000000000000000000000000010
135CACAATAGTCCCGGTTACAATAAA1420,108,586w24Separator0000000000000000000000000000000000000000000000000100
136GGAATTCGTCCGACCGACGAAAGA220,108,586c24Separator0000000000000000000000000000000000000000000000000001
137ACAATAGTCCCGGTTACAA2720,108,587w19Separator0000000000000000000000000000000000000000000000000011
138ACAATAGTCCCGGTTACAATAA1620,108,587w22Separator0000000000000000000100000000000000000000000000000011
139ACAATAGTCCCGGTTACAATAAA1620,108,587w23Separator0000000010000000000000000000000000000000000000000000
140ACAATAGTCCCGGTTACAATAAAA1620,108,587w24Separator00000161132001000000000000000101100000000000010000501
141ACAATAGTCCCGGTTACAATAAAAA1620,108,587w25Separator0000000010000000000000000000000000000000000000000100



Number of unique reads retrieved on this page: 96