Rice small RNA Information



Reads existing in this region (Chr 1, 2,324,352 - 2,324,816):  1 - 154 of 154      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorG1_5G6_10AGO1a_IPAGO1b_IPAGO1c_IPAGO_CTAGO4a_IPAGO4b_IPAGO16_IPdcl1_sdldcl3_sdlrdr2_sdlwt_sdlME5aPxo99aOsMockLeafRootBCPCallusTCPUNMLACt1La706La706cLros1bLOsNpbOsTCP_brdr6_HTrdr6_LTzh_HTzh_LT704f704s9311f 9311s waf1-1waf1-2Wt_waf1-1Wt_waf1-2Wt_HEN1bSeg_Wt_HEN1bOs hen1-358N_158S_1total_mel1total_WTMEL1IP_WTMEL1IP_mel1WTLamina3A1Lamina3A3Lamina
Signature abundances normalized to (varies by library depth): Separator2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M10M10M10M10M2M2M2M2M5M5M5M5M5M5M5M2M2M5M5M5M5M8M8M8M
1GAGACTAAAATTGAGTTTGTGACA12,324,353c24Separator0000000100000000000000000000000000000000000000000000
2AGCGGAGACTAAAATTGAGTT12,324,357c21Separator0000000000000000000000000000110100000000000000000000
3TAAGCGGAGACTAAAATTGAGTT12,324,359c23Separator0000000000000000000000000000001000000000000000000000
4TTTTTTAAGCGGAGACTAAAATT12,324,364c23Separator0000000000000000000000100000000000000000000000000000
5TTTTTTTAAGCGGAGACTAA12,324,365c20Separator0000000000000000000000000000000100000000000000000000
6TTTTTTTAAGCGGAGACTAAA12,324,365c21Separator0000000000000000000000000000000100100000000000000000
7ACACAACCTAGAAAATGTATACAG12,324,366w24Separator0000000000000000000000000000010000000000000000000000
8TTTTTTTTAAGCGGAGACTA12,324,366c20Separator0000000000000000000000000000000100000000000000000000
9TTTTTTTTAAGCGGAGACTAA12,324,366c21Separator00000000000000000000000000001174610300000000003210000
10CAACCTAGAAAATGTATACAG12,324,369w21Separator0000000000000000000000000000040300000000000000080000
11TGTATACAGTTAGGGGGCGGA12,324,381w21Separator0000000000000000000000000000001100000000000003310000
12TATACATTTTCTAGGTTGTGT12,324,386c21Separator0000000000000000000000000000000100000000000001100000
13GTATACATTTTCTAGGTTGTG12,324,387c21Separator0000000000000000000000000000000000000000000001200000
14AGTTAGGGGGCGGACCTTGGT12,324,388w21Separator0000000000000000000000000000100000000000000000000000
15TTAGGGGGCGGACCTTGGTT12,324,390w20Separator0000000000000000000000000000012000000000000000000000
16TTAGGGGGCGGACCTTGGTTT12,324,390w21Separator0000000000000000000000000000326161300300000000000100000
17CTAACTGTATACATTTTCTA12,324,393c20Separator0000000000000000000000000000100000000000000000000000
18CTAACTGTATACATTTTCTAG12,324,393c21Separator0000000000000000000000000000000000000000000000010000
19CTAACTGTATACATTTTCTAGGTT12,324,393c24Separator0000000000000000000000000000000000000000000010000000
20CGCCCCCTAACTGTATACATT12,324,399c21Separator0000000000000000000000000000000000000000000000010000
21CCAAGGTCCGCCCCCTAACTG12,324,407c21Separator0000000000000000000000000000000000000000000000010000
22TGAGCCAGGCCCCACACCAGC12,324,410w21Separator0000000000000000000000000000000000000000000000100000
23CAAACCAAGGTCCGCCCCCTA12,324,411c21Separator0000000000000000000000000000000000000000000000010000
24GAGCCAGGCCCCACACCAGCA12,324,411w21Separator0000000000000000000000000000100000100000000000000000
25CCACACCAGCACACCGGATAA12,324,421w21Separator0000000000000000000000000000000100000000000000000000
26AGCACACCGGATAATCGGATA12,324,428w21Separator0000000000000000000000000000010000000000000000000000
27TGGTGTGGGGCCTGGCTCAA12,324,428c20Separator0000000000000000000000000000010000000000000000000000
28CTGGTGTGGGGCCTGGCT12,324,429c18Separator0000000000000000000000000000000000000000000000010000
29CTGGTGTGGGGCCTGGCTC12,324,429c19Separator0000000000000000000000000000000000000000000000010000
30CTGGTGTGGGGCCTGGCTCAA12,324,429c21Separator0000000000000000000000000000000000100000000000010000
31CACCGGATAATCGGATATTGG12,324,432w21Separator0000000000000000000000000000010000300000000001310000
32CCGGATAATCGGATATTGGGC12,324,434w21Separator0000000000000000000000000000000000000000000000110000
33CGGATAATCGGATATTGG12,324,435w18Separator0000000000000000000000000000001300000000000000000000
34CGGATAATCGGATATTGGG12,324,435w19Separator0000000000000000000000000000001000000000000000000000
35CGGATAATCGGATATTGGGCC12,324,435w21Separator0000000000000000000000000000000200000000000001310000
36GGATATTGGGCCAAAGAGAAA12,324,444w21Separator0000000000000000000000000000000000100000000000000000
37AATATCCGATTATCCGGTGTG12,324,450c21Separator0000000000000000001000000000245910200000000000000000
38CAATATCCGATTATCCGGTGT12,324,451c21Separator0000000000000000000000000000010000000000000000000000
39CATGGGTGAAACTGCATG12,324,474w18Separator0000000000000000000000000000000000000000000000010000
40CATGGGTGAAACTGCATGTA12,324,474w20Separator0000000000000000000000000000000000200000000000000000
41CATGGGTGAAACTGCATGTAT12,324,474w21Separator00000000000000000000000000007312121401600000000000010000
42ATGGGTGAAACTGCATGTAT12,324,475w20Separator0000000000000000000000000000012200000000000000000000
43TGAAACTGCATGTATCTACAC12,324,480w21Separator0000000000000000000000000000100000000000000000000000
44TGAAACTGCATGTATCTACACGAG12,324,480w24Separator0000000000000000000000000000001000000000000000000000
45GAAACTGCATGTATCTACACGAGC12,324,481w24Separator0000000000000000000000000000000000000000000000100000
46AACTGCATGTATCTACACGAG12,324,483w21Separator0000000000000000000000000000000000100000000000000000
47TGCATGTATCTACACGAG12,324,486w18Separator0000000000000000000000000000012100000000000000000000
48TGCATGTATCTACACGAGCTT12,324,486w21Separator0000000000000000000001000000002100000000000000000000
49GCATGTATCTACACGAGCTT12,324,487w20Separator0000000000000000000000000000000100000000000000000000
50ATGTATCTACACGAGCTTTGA12,324,489w21Separator0000000000000000000000000000001000000000000000000000
51ATCTACACGAGCTTTGATGCC12,324,493w21Separator0000000000000000000000000000000000100000000000000000
52TCTACACGAGCTTTGATGCCC12,324,494w21Separator0000000000000000000000000000000000100000000000000000
53CTACACGAGCTTTGATGCCCA12,324,495w21Separator0000000000000000000000000000110110900000000000120000
54TACACGAGCTTTGATGCCCAG12,324,496w21Separator0000000000000000000000000000001000000000000000000000
55TTTGATGCCCAGATCAGAGGC12,324,505w21Separator0000000000000000000000000000001000000000000000000000
56ATCAAAGCTCGTGTAGAT12,324,510c18Separator0000000000000000000000000000000000000000000000100000
57GCATCAAAGCTCGTGTAGAT12,324,512c20Separator0000000000000000000000000000010000000000000000000000
58GGCATCAAAGCTCGTGTA12,324,513c18Separator0000000000000000000000000000010000000000000000000000
59GGCATCAAAGCTCGTGTAGA12,324,513c20Separator0000000000000000000000000000030200000000000000000000
60GGCATCAAAGCTCGTGTAGAT12,324,513c21Separator000000000000000000000200000031176509900000000000010100000
61GGCATCAAAGCTCGTGTAGATA12,324,513c22Separator0000000000000000000000000000100000000000000000000000
62CAGATCAGAGGCCTGCGCATT12,324,514w21Separator0000000000000000000000000000021100000000000000000000
63GATCAGAGGCCTGCGCATTCC12,324,516w21Separator0000000000000000000000000000001100000000000000000000
64ATCAGAGGCCTGCGCATTCCC12,324,517w21Separator0000000000000000000000000000000100000000000000000000
65CAGAGGCCTGCGCATTCCCTT12,324,519w21Separator0000000000000000000001000000012500000000000000000000
66TCTGATCTGGGCATCAAAGCT12,324,522c21Separator0000000000000000000000000000001000000000000000000000
67GCGCATTCCCTTGTATGCTGA12,324,528w21Separator0000000000000000000000000000012400000000000000000000
68GCAGGCCTCTGATCTGGGCAT12,324,529c21Separator0000000000000000000000000000100010100000000000000000
69GCGCAGGCCTCTGATCTGGGCATC12,324,531c24Separator0000000000000000000000000000000010000000000000000000
70ATGCGCAGGCCTCTGATCTGG12,324,533c21Separator0000000000000000000000000000000000000000000001000000
71AATGCGCAGGCCTCTGATCTG12,324,534c21Separator0000000000000000000000000000202000000000000004300000
72CTTGTATGCTGATGAATTCT12,324,537w20Separator0000000000000000000000000000000000000000000000010000
73CTTGTATGCTGATGAATTCTA12,324,537w21Separator0000000000000000000000000000000100000000000001150000
74ACAAGGGAATGCGCAGGCCTC12,324,541c21Separator0000000000000000000000000000000100000000000000000000
75TACAAGGGAATGCGCAGGCCTCTG12,324,542c24Separator0000000000000000000000000000000010000000000000000000
76TGCTGATGAATTCTAGGATAT12,324,543w21Separator0000000000000000000000000000000100000000000000000000
77AGCATACAAGGGAATGCGCAG12,324,546c21Separator0000000000000000000000000000000300000000000000100000
78TGATGAATTCTAGGATATCGG12,324,546w21Separator0000000000000000000000000000001000000000000000000000
79TGATGAATTCTAGGATATCGGC12,324,546w22Separator0000000000000000000000000000000000000000000001000000
80CAGCATACAAGGGAATGCGCA12,324,547c21Separator0000000000000000000000000000000200000000000000000000
81GATGAATTCTAGGATATCGGC12,324,547w21Separator0000000000000000000000000000000000000000000009200000
82GATGAATTCTAGGATATCGGCAAG12,324,547w24Separator0000000000000000000000000000000100000000000000000000
83ATGAATTCTAGGATATCGGCA12,324,548w21Separator0000000000000000000000000000001100000000000000000000
84ATGAATTCTAGGATATCGGCAAGG12,324,548w24Separator0000000000000000000000000000000000000000000000100000
85TGAATTCTAGGATATCGGCA12,324,549w20Separator0000000000000000000000000000010000000000000000000000
86TGAATTCTAGGATATCGGCAA12,324,549w21Separator00000000000000000000120000001156181263006100000000141310000
87GAATTCTAGGATATCGGCAA12,324,550w20Separator0000000000000000000000000000003400000000000000000000
88TCTAGGATATCGGCAAGGGAAA12,324,554w22Separator0000000000000000000000000000000100000000000000000000
89GAATTCATCAGCATACAAGG12,324,555c20Separator0000000000000000000000000000000000000000000000200000
90GAATTCATCAGCATACAAGGG12,324,555c21Separator0000000000000000000000000000152500000000000006600000
91TAGGATATCGGCAAGGGAAAA12,324,556w21Separator0000000000000000000000000000010100000000000000000000
92CTAGAATTCATCAGCATACAA12,324,558c21Separator0000000000000000000000000000000000000000000003280000
93GGATATCGGCAAGGGAAAACA12,324,558w21Separator0000000000000000000000000000060200100000000000000000
94CGATATCCTAGAATTCATCAG12,324,565c21Separator0000000000000000000000000000000000000000000000010000
95TTTTCCCTTGCCGATATCCTA12,324,576c21Separator0000000000000000000000000000011100000000000000020000
96TTATTGTTTTCTTAATTTTTA12,324,579w21Separator0000000000000000000000000000102000000000000000000000
97GTCTTAAAATGAATAGGTCCT12,324,600w21Separator0000000000000000000000000000000000000000000000100000
98TGAATAGGTCCTGAGATCTCCCGC12,324,609w24Separator0000000000000000000000000000000000000000000000100000
99ATAGGTCCTGAGATCTCCCGC12,324,612w21Separator0000000000000000000000000000000000000000000001600000
100TAGGTCCTGAGATCTCCCGCA12,324,613w21Separator0000000000000000000000000000000100000000000000000000
101CCTGAGATCTCCCGCAGACATGCA12,324,618w24Separator0000000000000000000000000000000020000000000000000000
102TGAGATCTCCCGCAGACATGC12,324,620w21Separator0000000000000000000000000000000100000000000001100000
103GAGATCTCCCGCAGACATGC12,324,621w20Separator0000000000000000000000000000000000000000000000100000
104GAGATCTCCCGCAGACATGCA12,324,621w21Separator00000000000000000000000000000113009000000000081010000
105GGGAGATCTCAGGACCTATTC12,324,630c21Separator0000000000000000000000000000000000200000000000100000
106GGGAGATCTCAGGACCTATTCA12,324,630c22Separator0000000000000000000000000000001000000000000000000000
107GGGAGATCTCAGGACCTATTCATTTTAAGA12,324,630c30Separator0000000000000000000000000000000000000000000001100000
108AGACATGCACTGATGTTCCAA12,324,633w21Separator0000000000000000000000000000027900200000000000000000
109GACATGCACTGATGTTCCAA12,324,634w20Separator0000000000000000000000000000001100000000000000000000
110TGTCTGCGGGAGATCTCAGGA12,324,637c21Separator0000000000000000000000000000011000000000000000000000
111ATGTCTGCGGGAGATCTCAG12,324,638c20Separator0000000000000000000000000000010100000000000000000000
112CATGTCTGCGGGAGATCT12,324,639c18Separator0000000000000000000000000000000000000000000000010000
113CATGTCTGCGGGAGATCTC12,324,639c19Separator0000000000000000000000000000000000000000000000010000
114CATGTCTGCGGGAGATCTCA12,324,639c20Separator0000000000000000000000000000000000100000000000010000
115CATGTCTGCGGGAGATCTCAG12,324,639c21Separator00000000000000000000000000000010105000000000014830000
116ACTGATGTTCCAAGTTCCCGT12,324,641w21Separator0000000000000000000000000000000000000000000000100000
117CTGATGTTCCAAGTTCCC12,324,642w18Separator0000000000000000000000000000010100000000000000010000
118CTGATGTTCCAAGTTCCCGT12,324,642w20Separator0000000000000000000000000000000000000000000000010000
119CTGATGTTCCAAGTTCCCGTC12,324,642w21Separator000000000000000000000000000001010010000000000551570000
120CAAGTTCCCGTCTAGCATTGC12,324,651w21Separator0000000000000000000000000000000000000000000000010000
121GGAACATCAGTGCATGTCTGC12,324,651c21Separator0000000000000000000000000000001000000000000000000000
122CGGGAACTTGGAACATCA12,324,660c18Separator0000000000000000000000000000000000000000000001000000
123CGGGAACTTGGAACATCAG12,324,660c19Separator0000000000000000000000000000000000000000000000010000
124CGGGAACTTGGAACATCAGT12,324,660c20Separator0000000000000000000000000000000000000000000001010000
125CGGGAACTTGGAACATCAGTG12,324,660c21Separator0000000000000000000000000000020200000000000001911410000
126CGGGAACTTGGAACATCAGTGC12,324,660c22Separator0000000000000000000000000000000000000000000000010000
127CGGGAACTTGGAACATCAGTGCA12,324,660c23Separator0000000000000000000000000000000000000000000000010000
128TCTAGCATTGCCCAGTTGGCC12,324,661w21Separator0000000000000000000000000000000000000000000001000000
129TAGCATTGCCCAGTTGGCC12,324,663w19Separator0000000000000000000000000000000100000000000000000000
130TAGCATTGCCCAGTTGGCCCA12,324,663w21Separator000000000000000000000100000062893300100000000010000000
131CTAGACGGGAACTTGGAACAT12,324,665c21Separator0000000000000000000000000000000000000000000000040000
132ATGCTAGACGGGAACTTGGAA12,324,668c21Separator0000000000000000000000000000001000000000000000000000
133AATGCTAGACGGGAACTTGGA12,324,669c21Separator0000000000000000000000000000000100000000000000000000
134CAATGCTAGACGGGAACTTGG12,324,670c21Separator0000000000000000000000000000000000000000000000010000
135GCAATGCTAGACGGGAACTTGGAA12,324,671c24Separator0000000000000000000000000000000010000000000000000000
136GGCAATGCTAGACGGGAACTT12,324,672c21Separator0000000000000000000000000000001100000000000000000000
137TGGGCAATGCTAGACGGGAAC12,324,674c21Separator0000000000000000000000000000001000000000000000000000
138ACTGGGCAATGCTAGACGGGAA12,324,676c22Separator0000000000000000000000000000000010000000000000000000
139AACTGGGCAATGCTAGACGGG12,324,677c21Separator0000000000000000001000000000000100000000000000000000
140AACTGGGCAATGCTAGACGGGA12,324,677c22Separator0000000000000000000001000000000010000000000000000000
141TGGCCCAATCTGAAATTCCCCGA12,324,677w23Separator0000000000000000000000000000000000000000000000010000
142CAACTGGGCAATGCTAGACGG12,324,678c21Separator0000000000000000000000000000010100000000000000000000
143CAACTGGGCAATGCTAGACGGGAA12,324,678c24Separator0000000000000000000000000000000010000000000000000000
144GCCAACTGGGCAATGCTAGAC12,324,680c21Separator0000000000000000000000000000000000100000000000000000
145GGCCAACTGGGCAATGCTAGA12,324,681c21Separator0000000000000000000000000000000000000000000000100000
146ATCTGAAATTCCCCGATGA12,324,684w19Separator0000000000000000000000000000000000000000000000100000
147ATTTCAGATTGGGCCAACTGGGCA12,324,692c24Separator0000000000000000000100000000000000000000000000000000
148CATCGGGGAATTTCAGATTGGG12,324,701c22Separator0000000000000000000000000000000000000000000000100000
149TCATCGGGGAATTTCAGA12,324,702c18Separator0000000000000000000000000000000000000000000000110000
150TCATCGGGGAATTTCAGATTG12,324,702c21Separator0000000000000000000000000000062210000000000003800000
151TCATCGGGGAATTTCAGATTGGGC12,324,702c24Separator0000000000000000000000000000000100000000000000010000
152TCATCGGGGAATTTCAGATTGGGCCAACTG12,324,702c30Separator0000000000000000000000000000000000000000000000200000
153AATAGCCTGTGACCATGCGTGCAT12,324,757c24Separator0000000000000000000000000000000000000001000000000000
154TATATATGTTTCGTTACTCTT12,324,785w21Separator0000000000000000000000000000000000000000000000100000



Number of unique reads retrieved on this page: 154