Rice small RNA Information



Reads existing in this region (Chr 1, 34,224,528 - 34,225,034):  1 - 158 of 158      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorG1_5G6_10AGO1a_IPAGO1b_IPAGO1c_IPAGO_CTAGO4a_IPAGO4b_IPAGO16_IPdcl1_sdldcl3_sdlrdr2_sdlwt_sdlME5aPxo99aOsMockLeafRootBCPCallusTCPUNMLACt1La706La706cLros1bLOsNpbOsTCP_brdr6_HTrdr6_LTzh_HTzh_LT704f704s9311f 9311s waf1-1waf1-2Wt_waf1-1Wt_waf1-2Wt_HEN1bSeg_Wt_HEN1bOs hen1-358N_158S_1total_mel1total_WTMEL1IP_WTMEL1IP_mel1WTLamina3A1Lamina3A3Lamina
Signature abundances normalized to (varies by library depth): Separator2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M10M10M10M10M2M2M2M2M5M5M5M5M5M5M5M2M2M5M5M5M5M8M8M8M
1TATACGAGCAACGCGTCGACGA134,224,571w22Separator0000000000000000000000000000000100000000000000000000
2CTCTCGTCGACGCGTTGCTCG134,224,595c21Separator0000000000000000000000000000000000000000000000100000
3TCACCGGGAACTAGAGCGGA134,224,628w20Separator0000000000000000000010000000365310100000000001000000
4TCACCGGGAACTAGAGCGGAA134,224,628w21Separator000000000000000000301220000004979117076541404800000000130210000
5TCACCGGGAACTAGAGCGGAAGT134,224,628w23Separator0000000000000000000000000000000000000000000000020000
6TCACCGGGAACTAGAGCGGAAGTACCAAGA134,224,628w30Separator0000000000000000000000000000000000000000000000030000
7CACCGGGAACTAGAGCGGAA134,224,629w20Separator0000000000000000000000000000653200100000000000000000
8ACCGGGAACTAGAGCGGAA134,224,630w19Separator00000000000000000000000000005103300000000000000000000
9CCGCTCTAGTTCCCGGTGA134,224,646c19Separator0000000000000000000000000000001000200000000000000000
10GTACCAAGAATAAAGTTCGCA134,224,649w21Separator0000000000000000000000000000141210400000000001000000
11GTACCAAGAATAAAGTTCGCACGG134,224,649w24Separator0000000000000000000000000000002300000000000003300000
12GTACCAAGAATAAAGTTCGCACGGC134,224,649w25Separator0000000000000000000000000000100200000000000011100000
13GTACCAAGAATAAAGTTCGCACGGCG134,224,649w26Separator0000000000000000000000000000000100000000000000000000
14GTACCAAGAATAAAGTTCGCACGGCGGAAG134,224,649w30Separator0000000000000000000000000000000000000000000000100000
15GTACCAAGAATAAAGTTCGCACGGCGGAAGTT134,224,649w32Separator0000000000000000000000000000000000000000000001200000
16CAAGAATAAAGTTCGCACGGC134,224,653w21Separator0000000000000000000000000000000000000000000000010000
17AAGAATAAAGTTCGCACGGCGGAA134,224,654w24Separator0000000000000000000000000000001000000000000000000000
18AGAATAAAGTTCGCACGGCGGAA134,224,655w23Separator0000000000000000000000000000000100000000000000000000
19GAACTTTATTCTTGGTAC134,224,666c18Separator0000000000000000000000000000001000000000000000000000
20GAACTTTATTCTTGGTACTT134,224,666c20Separator0000000000000000000000000000020000000000000000000000
21CGAACTTTATTCTTGGTAC134,224,667c19Separator0000000000000000000000000000110000000000000000010000
22CGAACTTTATTCTTGGTACT134,224,667c20Separator0000000000000000000000000000001000000000000003010000
23CGAACTTTATTCTTGGTACTT134,224,667c21Separator00000000000000000000000000002435000000000000014320000
24CGGCGGAAGTTAACTTATACA134,224,670w21Separator0000000000000000000000000000000000000000000001000000
25CGGCGGAAGTTAACTTATACAGGC134,224,670w24Separator0000000000000000000000000000005400000000000000000000
26CGGCGGAAGTTAACTTATACAGGCA134,224,670w25Separator0000000000000000000000000000002100000000000000000000
27GGCGGAAGTTAACTTATACAGGC134,224,671w23Separator0000000000000000000000000000000100000000000000000000
28GCGGAAGTTAACTTATACAGGCAA134,224,672w24Separator0000000000000000000000000000034200000000000000000000
29CGGAAGTTAACTTATACAGGCA134,224,673w22Separator0000000000000000000000000000001000000000000000000000
30TTAACTTATACAGGCAACATT134,224,679w21Separator0000000000000000000000000000101000000000000000000000
31TATAAGTTAACTTCCGCCGTG134,224,688c21Separator0000000000000000000000000000034300000000000003310000
32CTGTATAAGTTAACTTCCGCCGTG134,224,691c24Separator0000000000000000000000000000100000000000000000000000
33GGCAACATTCACGGACAG134,224,691w18Separator0000000000000000000000000000000100000000000000000000
34GGCAACATTCACGGACAGATT134,224,691w21Separator0000000000000000000000000000031100000000000001100000
35CCTGTATAAGTTAACTTCCGC134,224,692c21Separator0000000000000000000000000000000000000000000000010000
36AACATTCACGGACAGATTCGTCAT134,224,694w24Separator0000000000000000000000000000000020000000000000000000
37ATTCACGGACAGATTCGTCATAGA134,224,697w24Separator0000000000000000000000000000000010000000000000000000
38TCTGTCCGTGAATGTTGCC134,224,709c19Separator0000000000000000000000000000322000000000000000000000
39TCTGTCCGTGAATGTTGCCT134,224,709c20Separator0000000000000000000000000000247900000000000000000000
40TCTGTCCGTGAATGTTGCCTG134,224,709c21Separator00000000000000000000000000001018282310300000000008910000
41CGTCATAGATAAGCTTGTGCA134,224,712w21Separator0000000000000000000000000000223000600000000000000000
42CGAATCTGTCCGTGAATGTTG134,224,713c21Separator0000000000000000000000000000000000000000000000010000
43GTCATAGATAAGCTTGTGCA134,224,713w20Separator0000000000000000000000000000020100000000000000000000
44TAAGCTTGTGCATTAAGTAGT134,224,721w21Separator0000000000000000000000000000010000000000000000000000
45AAGCTTGTGCATTAAGTA134,224,722w18Separator0000000000000000000000000000000100000000000000000000
46AGCTTGTGCATTAAGTAGTAC134,224,723w21Separator0000000000000000000000000000000100000000000000000000
47ACAAGCTTATCTATGACGAA134,224,729c20Separator0000000000000000000000000000010000000000000000000000
48CACAAGCTTATCTATGACGA134,224,730c20Separator0000000000000000000000000000100010000000000000000000
49CACAAGCTTATCTATGACGAA134,224,730c21Separator0000000000000000000000000000153100500000000001290000
50TTAAGTAGTACCGCACTAG134,224,733w19Separator0000000000000000000000000000001000000000000000000000
51TTAAGTAGTACCGCACTAGGC134,224,733w21Separator0000000000000000000000000000811161520181000000001808140000
52TAAGTAGTACCGCACTAGGCA134,224,734w21Separator0000000000000000000000000000000100000000000000000000
53CTAGGCACTTAAAAGAGC134,224,748w18Separator0000000000000000000000000000001000000000000000000000
54TAGGCACTTAAAAGAGCGGTA134,224,749w21Separator0000000000000000000000000000001100100000000000000000
55AGGCACTTAAAAGAGCGGTA134,224,750w20Separator0000000000000000000000000000000100000000000000000000
56CACTTAAAAGAGCGGTAGTTAA134,224,753w22Separator0000000000000000000000000000010000000000000000000000
57ACTTAAAAGAGCGGTAGTT134,224,754w19Separator0000000000000000000000000000100000000000000000000000
58ACTTAAAAGAGCGGTAGTTA134,224,754w20Separator0000000000000000000000000000010000100000000000000000
59ACTTAAAAGAGCGGTAGTTAA134,224,754w21Separator00000000000000000000010000002345484120100000000000200000
60TTAAAAGAGCGGTAGTTAAAT134,224,756w21Separator0000000000000000000000000000001000000000000000000000
61TAAAAGAGCGGTAGTTAA134,224,757w18Separator0000000000000000000000000000010000000000000000000000
62TAAAAGAGCGGTAGTTAAATT134,224,757w21Separator0000000000000000000000000000001000000000000000000000
63AGAGCGGTAGTTAAATTGCAA134,224,761w21Separator0000000000000000000000000000100000000000000000000000
64GCGGTAGTTAAATTGCAACAG134,224,764w21Separator0000000000000000000000000000001000000000000000000000
65AACTACCGCTCTTTTAAGTGC134,224,772c21Separator0000000000000000000000000000110100000000000000100000
66ATTGCAACAGTAAACATC134,224,775w18Separator0000000000000000000000000000100000000000000000000000
67ATTGCAACAGTAAACATCTCC134,224,775w21Separator0000000000000000000000000000144100000000000006500000
68AGTAAACATCTCCGGTTCCA234,224,783w20Separator0000000000000000000000000000001000000000000000000000
69GTAAACATCTCCGGTTCCAAT134,224,784w21Separator0000000000000000000000000000001000000000000000000000
70AGATGTTTACTGTTGCAAT134,224,793c19Separator0000000000000000000000000000110000000000000000000000
71AGATGTTTACTGTTGCAATT134,224,793c20Separator0000000000000000000000000000210100000000000001100000
72AGATGTTTACTGTTGCAATTT134,224,793c21Separator00000000000000000000000000002050303100100000000001100000
73AGATGTTTACTGTTGCAATTTA134,224,793c22Separator0000000000000000000000000000032000000000000000000000
74AGATGTTTACTGTTGCAATTTAA134,224,793c23Separator0000000000000000000000000000120200000000000000000000
75CGGTTCCAATATATGTCACGG134,224,795w21Separator0000000000000000000000000000000000000000000000010000
76CGGAGATGTTTACTGTTGCAA134,224,796c21Separator0000000000000000000000000000100300000000000000010000
77CGGAGATGTTTACTGTTGCAAT134,224,796c22Separator0000000000000000000000000000100000000000000000000000
78GGTTCCAATATATGTCAC134,224,796w18Separator0000000000000000000000000000001000000000000000000000
79GGTTCCAATATATGTCACG134,224,796w19Separator0000000000000000000000000000012000000000000000000000
80GGTTCCAATATATGTCACGGG134,224,796w21Separator0000000000000000000000000000012300000000000001300000
81ACCGGAGATGTTTACTGTTGC134,224,798c21Separator0000000000000000000000000000010000000000000000000000
82TTCCAATATATGTCACGG134,224,798w18Separator0000000000000000000000000000010000000000000000000000
83TTCCAATATATGTCACGGG134,224,798w19Separator0000000000000000000001000000000000000000000000000000
84AACCGGAGATGTTTACTGT234,224,799c19Separator0000000000000000000000000000100000000000000000000000
85AACCGGAGATGTTTACTGTTG134,224,799c21Separator0000000000000000000000000000001000000000000000000000
86AACCGGAGATGTTTACTGTTGC134,224,799c22Separator0000000000000000000000000000000100000000000000000000
87GAACCGGAGATGTTTACTGT234,224,800c20Separator0000000000000000000000000000000200000000000000000000
88GAACCGGAGATGTTTACTGTTGCA134,224,800c24Separator0000000000000000000000000000000100000000000000000000
89GGAACCGGAGATGTTTACT234,224,801c19Separator0000000000000000000000000000100000000000000000000000
90GGAACCGGAGATGTTTACTGT234,224,801c21Separator0000000000000000000000000000162891200100000000000000000
91TGGAACCGGAGATGTTTACT234,224,802c20Separator0000000000000000000000000000200100000000000000000000
92TGGAACCGGAGATGTTTACTG234,224,802c21Separator0000000000000000000000000000185900000000000000200000
93TGGAACCGGAGATGTTTACTGT234,224,802c22Separator0000000000000000000000000000200100000000000000000000
94ATTGGAACCGGAGATGTTTAC134,224,804c21Separator0000000000000000000000000000000100000000000000000000
95TATTGGAACCGGAGATGTTTAC134,224,805c22Separator0000000000000000000000000000010000000000000000000000
96TATATTGGAACCGGAGATGTT134,224,807c21Separator0000000000000000000000000000110000000000000000000000
97TGACATATATTGGAACCGG134,224,812c19Separator0000000000000000001010000000152710000000000001100000
98GTGACATATATTGGAACCGG134,224,813c20Separator0000000000000000000000000000113100000000000000010000
99CGTGACATATATTGGAAC134,224,814c18Separator0000000000000000000000000000201000000000000000000000
100CGTGACATATATTGGAACCG134,224,814c20Separator0000000000000000000000000000000000000000000001000000
101CGTGACATATATTGGAACCGG134,224,814c21Separator000000000000000000001000000528484447201200000000014324250000
102CCGTGACATATATTGGAACCGG134,224,815c22Separator0000000000000000000000000000010000000000000000000000
103CTTGTATAAGCTATCAGCCTA134,224,817w21Separator0000000000000000000000000000000000000000000000100000
104AGCCCGTGACATATATTGG134,224,818c19Separator0000000000000000000000000000001000000000000000000000
105CAAGCCCGTGACATATATTGG134,224,820c21Separator0000000000000000000000000000000000000000000000010000
106GGCTGATAGCTTATACAAGC134,224,835c20Separator0000000000000000000000000000000000000000000001000000
107GGCTGATAGCTTATACAAGCC134,224,835c21Separator0000000000000000000000000000100000000000000000000000
108TGCATGATGGAACATTTGGA134,224,838w20Separator0000000000000000000000000000001000000000000000000000
109TGCATGATGGAACATTTGGAA134,224,838w21Separator000000000000000000101000000096161171131502600000000015310000
110GCATGATGGAACATTTGGAA134,224,839w20Separator0000000000000000000000000000201200000000000000000000
111TGATGGAACATTTGGAACCGG134,224,842w21Separator0000000000000000000000000000002000000000000000000000
112GATGGAACATTTGGAACCGGA134,224,843w21Separator0000000000000000000000000000000100000000000000000000
113TCATGCATAGGCTGATAGCTT134,224,844c21Separator0000000000000000000000000000000000000000000001000000
114TGGAACATTTGGAACCGGACA134,224,845w21Separator0000000000000000000000000000000000000000000001000000
115CAAATGTTCCATCATGCATA134,224,855c20Separator0000000000000000000000000000000000100000000000000000
116CCAAATGTTCCATCATGCATA134,224,856c21Separator0000000000000000000000000000000100000000000010000000
117GAACCGGACATATATTATTGC134,224,856w21Separator0000000000000000000000000000000000000000000003000000
118CCGGACATATATTATTGC134,224,859w18Separator0000000000000000000000000000001000000000000000000000
119CCGGACATATATTATTGCTA134,224,859w20Separator0000000000000000000000000000001000000000000000100000
120CCGGACATATATTATTGCTAC134,224,859w21Separator0000000000000000001000000000433600100000000004240000
121CGGACATATATTATTGCTAC134,224,860w20Separator0000000000000000000000000000100000000000000000000000
122GGACATATATTATTGCTAC134,224,861w19Separator0000000000000000000000000000000100000000000000000000
123TATTATTGCTACAGTAAACAT134,224,868w21Separator0000000000000000000000000000100100000000000000000000
124AGCAATAATATATGTCCG134,224,877c18Separator0000000000000000000000000000001000000000000000000000
125AGCAATAATATATGTCCGGTT134,224,877c21Separator0000000000000000000000000000334443800000000000015100000
126TAGCAATAATATATGTCCGGT134,224,878c21Separator0000000000000000000000000000001000000000000000000000
127AGTAAACATCTCCGGTTCCA234,224,880w20Separator0000000000000000000000000000001000000000000000000000
128AGTAAACATCTCCGGTTCCAT134,224,880w21Separator0000000000000000000000000000310200000000000000000000
129GGAGATGTTTACTGTAGCAAT134,224,892c21Separator0000000000000000000000000000000000000000000003000000
130CGGAGATGTTTACTGTAGCAA134,224,893c21Separator0000000000000000000000000000000100000000000000020000
131AACCGGAGATGTTTACTGT234,224,896c19Separator0000000000000000000000000000100000000000000000000000
132AACCGGAGATGTTTACTGTAG134,224,896c21Separator0000000000000000000000000000010000000000000000000000
133GAACCGGAGATGTTTACTGT234,224,897c20Separator0000000000000000000000000000000200000000000000000000
134GAACCGGAGATGTTTACTGTA134,224,897c21Separator0000000000000000000000000000101000000000000000000000
135GGAACCGGAGATGTTTACT234,224,898c19Separator0000000000000000000000000000100000000000000000000000
136GGAACCGGAGATGTTTACTGT234,224,898c21Separator0000000000000000000000000000162891200100000000000000000
137TGGAACCGGAGATGTTTACT234,224,899c20Separator0000000000000000000000000000200100000000000000000000
138TGGAACCGGAGATGTTTACTG234,224,899c21Separator0000000000000000000000000000185900000000000000200000
139TGGAACCGGAGATGTTTACTGT234,224,899c22Separator0000000000000000000000000000200100000000000000000000
140ATGGAACCGGAGATGTTTAC134,224,900c20Separator0000000000000000000000000000001000000000000000000000
141ATGGAACCGGAGATGTTTACTGT134,224,900c23Separator0000000000000000000000000000000100000000000001000000
142AATGGAACCGGAGATGTTTACT134,224,901c22Separator0000000000000000000000000000021000000000000000000000
143AATGGAACCGGAGATGTTTACTGT134,224,901c24Separator0000000000000000000000000000150300000000000000000000
144TGCATTTGTCTTCCACTTCTT134,224,901w21Separator0000000000000000000000000000001000000000000000000000
145TGCAATGGAACCGGAGATGTT134,224,904c21Separator0000000000000000000000000000010100000000000000000000
146ATGCAATGGAACCGGAGATGT134,224,905c21Separator0000000000000000000000000000000100000000000000000000
147ATGCAATGGAACCGGAGATGTTTA134,224,905c24Separator0000000000000000000000000000010000000000000000000000
148AAATGCAATGGAACCGGAGAT134,224,907c21Separator0000000000000000000000000000011100000000000000000000
149AAATGCAATGGAACCGGAGATGTT134,224,907c24Separator0000000000000000000000000000010000000000000000000000
150CAAATGCAATGGAACCGGAGAT134,224,908c22Separator0000000000000000000000000000000000000000000000010000
151GAAGACAAATGCAATGGAACCGGA134,224,913c24Separator0000000000000000000000000000001000000000000000000000
152AGTGGAAGACAAATGCAATGGAAC134,224,917c24Separator0000000000000000000000000000100000000000000000000000
153GAAGTGGAAGACAAATGCAAT134,224,919c21Separator0000000000000000000000000000001000000000000000000000
154AAATTCTAATGTATTGATTGT134,224,922w21Separator0000000000000000000000000000001000000000000000000000
155AATCAATACATTAGAATTTAA134,224,940c21Separator0000000000000000000000000000101000000000000000000000
156TCTTTGCAGGACAAATGAAGACAC134,224,956w24Separator0000000000000000000000000000100000000000000100000000
157TTTGCAGGACAAATGAAGAC134,224,958w20Separator0000000000000000000000000000000000000000000001000000
158CAAAGATTTCATTTTTGACAC134,224,961c21Separator0000000000000000000000000000001000000000000000000000



Number of unique reads retrieved on this page: 142