Rice small RNA Information



Reads existing in this region (Chr 1, 2,334,733 - 2,335,385):  1 - 172 of 172      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorSC1ISC2ISC3DSD1ISD2DSNa1ISNa2DSCd1ISCd2DSHt1ISCdNa1ISHtD1ISHtNa1IS1dc1IS1dc1DS2dc1IS2dc1DRCn1IRCn2DRP1IRP2DRS1IRS2DRN1IRN2DRK1IRK2DRKNa1IRKNa2DRD1IRD2DShCn1IShCn2DShP1IShP2DShS1IShS2DShN1IShN2DShK1IShK2DShKNa1IShKNa2DPC1IPC1CPC2CPD1IPD1CPD2CPNa1IPNa1CPNa2CPCd1IPCd2DPHt1IPCdNa1IPHtD1IPHtNa1IP1dc1IP1dc1DP2dc1IP2dc1Drbq
Signature abundances normalized to (varies by library depth): Separator2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M2M1M
1GCATTGGTAACATGAGAAGTA12,334,833w21Separator000000000000000000000000000000000000000000000000000000000000001
2TTGGGTAGATAGAGAGAAG12,334,854w19Separator000000000000000000000000000000000000000000000100000000000000001
3TTGGGTAGATAGAGAGAAGC12,334,854w20Separator000000000000000000000000000000000000000000040201100000000001000
4TTGGGTAGATAGAGAGAAGCC12,334,854w21Separator00000000000000000000000000000000000000000008219312262723448164840703361101701940
5TTGGGTAGATAGAGAGAAGCCT12,334,854w22Separator000000000000000000000000000000000000000000001000000000000000000
6TGGGTAGATAGAGAGAAGCC12,334,855w20Separator000000000000000000000000000000000000000000000000100003500000000
7TGGGTAGATAGAGAGAAGCCT12,334,855w21Separator000000000000000000000000000000000000000000040000000000000000000
8GGGTAGATAGAGAGAAGCC12,334,856w19Separator000000000000000000000000000000000000000000000000001000000000001
9TGGCATCAATTTTATTAGGAA12,334,875w21Separator000000000000000000000000000000000000000000041300001001000000000
10GGCATCAATTTTATTAGGAA12,334,876w20Separator000000000000000000000000000000000000000000000000100000000000000
11GGAAATATGAACATACTCTC12,334,896w20Separator000000000000000000000000000000000000000000000101000000000000000
12GGAAATATGAACATACTCTCT12,334,896w21Separator000000000000000000000000000000000000000000041040000000000000000
13AGAGTATGTTCATATTTCCTT12,334,914c21Separator000000000000000000000000000000000000000000000201141000000000010
14AGTATTGGGAACATAGGATCA12,334,917w21Separator000000000000000000000000000000000000000000000000000000000000001
15TTGGGAACATAGGATCAAGCC12,334,921w21Separator000000000000000000000000000000000000000000000000000000000000001
16CAGATTTGTTGTGCTGGCT12,334,956c19Separator000000000000000000000000000000000000000000000100000000000000000
17CAGATTTGTTGTGCTGGCTT12,334,956c20Separator000000000000000000000000000000000000000000000100000000000000000
18CAGATTTGTTGTGCTGGCTTG12,334,956c21Separator000000000000000000000000000000000000000000001040000000000000008
19CATGAATTGCTGACCATG12,334,959w18Separator000000000000000000000000000000000000000000000000000000000000001
20CATGAATTGCTGACCATGC12,334,959w19Separator000000000000000000000000000000000000000000000000000000000000001
21CATGAATTGCTGACCATGCA12,334,959w20Separator000000000000000000000000000000000000000000000000000000000000001
22CATGAATTGCTGACCATGCAG12,334,959w21Separator00000000000000000000000000000000000000000000274040020400001030039
23TCATGGACAGATTTGTTGTGCT12,334,963c22Separator000000000000000000000000000000000000000000000000000000000001000
24TTCATGGACAGATTTGTTGTG12,334,964c21Separator000000000000000000000000000000000000000000000000000000008000000
25ACCATGCAGTAGGTAACAT12,334,971w19Separator000000000000000000000000000000000000000000000000000001000000000
26GCATGGTCAGCAATTCATGGA12,334,977c21Separator000000000000000000000000000000000000000000000200000000000700008
27TAGGTAACATGGAAGAACTAT12,334,980w21Separator000000000000000000000000000000000000000000003184000000000000010
28CTATCTACTGCGAACAGGCGA12,334,997w21Separator000000000000000000000000000000000000000000000000000000000000001
29ATCTACTGCGAACAGGCGAACGGC12,334,999w24Separator000000000000000000000000000000000000000000000001000000000000000
30TCTACTGCGAACAGGCGAACGGC12,335,000w23Separator000000000000000000000000000000000000000000000100000000000000000
31CTACTGCGAACAGGCGAAC12,335,001w19Separator000000000000000000000000000000000000000000000100000000000000000
32CTACTGCGAACAGGCGAACG12,335,001w20Separator000000000000000000000000000000000000000000000100000000000000001
33CTACTGCGAACAGGCGAACGG12,335,001w21Separator0000000000000000000000000000000000000000000110825281938198738929442211149392334266268257158176458
34CTACTGCGAACAGGCGAACGGC12,335,001w22Separator000000000000000000000000000000000000000000000000000000000000001
35CTACTGCGAACAGGCGAACGGCGA12,335,001w24Separator000000000000000010000000000000000000000000000000000000000000000
36TACTGCGAACAGGCGAACGG12,335,002w20Separator000000000000000000000000000000000000000000000140100010400000024130
37TACTGCGAACAGGCGAACGGC12,335,002w21Separator00000000000000000000000000000000000000000000530110040106800412130
38ACTGCGAACAGGCGAACGG12,335,003w19Separator000000000000000000000000000000000000000000000000000006000700001
39CTGCGAACAGGCGAACGG12,335,004w18Separator0000000000000000000000000000000000000000000000000400010000211001
40TGCGAACAGGCGAACGGCGAT12,335,005w21Separator000000000000000000000000000000000000000000000000001000000000000
41GTTCGCAGTAGATAGTTCTTCCAT12,335,011c24Separator000000000000000000000000000000000000000000000000000001000000000
42CTGTTCGCAGTAGATAGTTCT12,335,013c21Separator000000000000000000000000000000000000000000000000000100500000000
43CCTGTTCGCAGTAGATAGTTC12,335,014c21Separator000000000000000000000000000000000000000000000100000000000000000
44CGAACGGCGATGGGTACATCT12,335,015w21Separator000000000000000000000000000000000000000000000100000000000000000
45AACGGCGATGGGTACATCTTC12,335,017w21Separator000000000000000000000000000000000000000000000000000000000000001
46TTCGCCTGTTCGCAGTAGATA12,335,018c21Separator000000000000000000000000000000000000000000040101000000000000010
47GTTCGCCTGTTCGCAGTA12,335,019c18Separator000000000000000000000000000000000000000000000100000000000000000
48GTTCGCCTGTTCGCAGTAGA12,335,019c20Separator000000000000000000000000000000000000000000000001000004000000000
49GTTCGCCTGTTCGCAGTAGAT12,335,019c21Separator0000000000000000000000000000000000000000000011231104042036106027040128
50CGTTCGCCTGTTCGCAGTAGA12,335,020c21Separator000000000000000000000000000000000000000000000000000100000000000
51CGATGGGTACATCTTCGT12,335,022w18Separator000000000000000000000000000000000000000000000000000001000000000
52CGATGGGTACATCTTCGTCAA12,335,022w21Separator0000000000000000000000000000000000000000000007011001030190700006
53CGATGGGTACATCTTCGTCAAC12,335,022w22Separator000000000000000000000000000000000000000000000000000001000000000
54ACATCTTCGTCAACGATCTTC12,335,030w21Separator000000000000000000000000000000000000000000000001000000000000000
55GACGAAGATGTACCCATCGCC12,335,040c21Separator000000000000000000000000000000000000000000000000000000000000001
56CGATCTTCAGCCAGGGAAGTA12,335,043w21Separator000000000000000000000000000000000000000000000040000000000700008
57TGGCTGAAGATCGTTGACGAA12,335,055c21Separator000000000000000000000000000000000000000000001040000000000000002
58CCCTGGCTGAAGATCGTT12,335,058c18Separator000000000000000000000000000000000000000000000000000100060000000
59TCCCTGGCTGAAGATCGTT12,335,059c19Separator000000000000000000000000000000000000000000000000000001000700000
60TTCCCTGGCTGAAGATCGTT12,335,060c20Separator00000000000000000000000000000000000000000000000000000000000012120
61TTCCCTGGCTGAAGATCGTTG12,335,060c21Separator000000000000000000000000000000000000000000000000000000000000001
62CTTCCCTGGCTGAAGATC12,335,061c18Separator000000000000000000000000000000000000000000000100100001000001000
63CTTCCCTGGCTGAAGATCG12,335,061c19Separator000000000000000000000000000000000000000000000000100001000001000
64CTTCCCTGGCTGAAGATCGT12,335,061c20Separator0000000000000000000000000000000000000000000013000001060087103001
65CTTCCCTGGCTGAAGATCGTT12,335,061c21Separator000000000000000000000000000000000000000000030416016124115183526110691457526093551588017
66ACTTCCCTGGCTGAAGATCGT12,335,062c21Separator000000000000000000000000000000000000000000001000100100008000000
67TACTTCCCTGGCTGAAGATCG12,335,063c21Separator000000000000000000000000000000000000000000001000000000000000010
68TACTTCCCTGGCTGAAGATCGTT12,335,063c23Separator000000000000000000000000000000000000000000000000100000000000000
69AATATCACGCTGAAGGGTT12,335,064w19Separator000000000000000000000000000000000000000000000000000000000001000
70AATATCACGCTGAAGGGTTA12,335,064w20Separator000000000000000000000000000000000000000000000100100000060000000
71AATATCACGCTGAAGGGTTAA12,335,064w21Separator0000000000000000000000000000000000000000000022801502401015250141012121512
72AATATCACGCTGAAGGGTTAATTT12,335,064w24Separator000000000000000000000000000000000000000000001100000000000000000
73TTACTTCCCTGGCTGAAGATC12,335,064c21Separator000000000000000000000000000000000000000000041000000000000000000
74ATATCACGCTGAAGGGTTAA12,335,065w20Separator000000000000000000000000000000000000000000000000000000000000001
75TTTACTTCCCTGGCTGAAGAT12,335,065c21Separator000000000000000000000000000000000000000000000000001000000000000
76TATCACGCTGAAGGGTTAATT12,335,066w21Separator000000000000000000000000000000000000000000000001000000000000000
77TGAAGGGTTAATTTGATCCAT12,335,074w21Separator000000000000000000000000000000000000000000000100000000000000000
78TTTGATCCATGTCACTCTAAA12,335,085w21Separator000000000000000000000000000000000000000000001140100000000000000
79TCACTCTAAATTTGCCGATTT12,335,096w21Separator000000000000000000000000000000000000000000001000000000000000000
80AGTGACATGGATCAAATTAACCCT22,335,100c24Separator000000000000000000000000000000000000000000000100000000000000000
81TAGAGTGACATGGATCAAA12,335,103c19Separator000000000000000000000000000000000000000000000100000000000000000
82TAGAGTGACATGGATCAAATT12,335,103c21Separator000000000000000000000000000000000000000000001900000001060000000
83TTAGAGTGACATGGATCAAAT12,335,104c21Separator000000000000000000000000000000000000000000000101000000000000010
84TTTAGAGTGACATGGATCAAA12,335,105c21Separator000000000000000000000000000000000000000000000100000000000000000
85TTTGCCGATTTGAAAAAATGT12,335,106w21Separator000000000000000000000000000000000000000000049105100000000000000
86TCGGCAAATTTAGAGTGACATG12,335,113c22Separator000000000000000000000000000000000000000000000000000001000000000
87TTTTCAAATCGGCAAATTTAG12,335,121c21Separator000000000000000000000000000000000000000000000100000000000000000
88TTTTCAAATCGGCAAATTTAGAG12,335,121c23Separator000000000000000000000000000000000000000000000000001000000000000
89TTTTTTCAAATCGGCAAATT12,335,123c20Separator000000000000000000000000000000000000000000000001000000000000000
90ATTTTTTCAAATCGGCAAATT12,335,124c21Separator000000000000000000000000000000000000000000001000001000000000001
91CACTATTATTTGTGATATCGG12,335,127w21Separator00000000000000000000000000000000000000000000080104110151300000023
92CACTATTATTTGTGATATCGGC12,335,127w22Separator000000000000000000000000000000000000000000000000000000000000001
93ACTATTATTTGTGATATCGGC12,335,128w21Separator000000000000000000000000000000000000000000000000000000060000000
94TGACATTTTTTCAAATCGGCA12,335,128c21Separator000000000000000000000000000000000000000000000000000100000000000
95AGTGACATTTTTTCAAATCGG12,335,130c21Separator000000000000000000000000000000000000000000000000000000000000001
96AATAGTGACATTTTTTCAAATCGG12,335,133c24Separator000010000000000000000000000000000000000000000000000000000000000
97TGTGATATCGGCTGAGTGCCA12,335,137w21Separator000000000000000000000000000000000000000000000000000000000000001
98GATATCGGCTGAGTGCCATTGGG12,335,140w23Separator000010000000000000000000000000000000000000000000000000000000000
99GATATCGGCTGAGTGCCATTGGGT12,335,140w24Separator000000000000000000000000000000000000000000000100000000000000000
100ATCGGCTGAGTGCCATTGGGTACG12,335,143w24Separator000000000000000000000000000000000000000000000100000000000000000
101GATATCACAAATAATAGTGA12,335,145c20Separator000000000000000000000000000000000000000000000000100000000000000
102CGATATCACAAATAATAGTGACAT12,335,146c24Separator000000000000000000000000000000000000000000000000100000000000000
103CTGAGTGCCATTGGGTACGAG12,335,148w21Separator00000000000000000000000000000000000000000000827432931152212516419421452431289
104TGAGTGCCATTGGGTACGAG12,335,149w20Separator000000000000000000000000000000000000000000000000100000000000000
105TGAGTGCCATTGGGTACGAGT12,335,149w21Separator000000000000000000000000000000000000000000040000000000000000000
106CGTACCCAATGGCACTCAGCC12,335,166c21Separator000000000000000000000000000000000000000000000000000000000000001
107GAGTCCGGGTCAGGTAACGGCTAG12,335,166w24Separator000000000000000000000000000000040000000000000000000000000000000
108AGTCCGGGTCAGGTAACGGCTAGG12,335,167w24Separator000000000000000000000000000000000000000000000000000100000000000
109TCGTACCCAATGGCACTCAGC12,335,167c21Separator000000000000000000000000000000000000000000000100000000000000010
110CTCGTACCCAATGGCACTCAG12,335,168c21Separator000000000000000000000000000000000000000000000000000001000000000
111TCCGGGTCAGGTAACGGCTAG12,335,169w21Separator0000000000000000000000000000000000000000000072001138560161060710901110
112CCGGGTCAGGTAACGGCTAG12,335,170w20Separator000000000000000000000000000000000000000000000000100006000000000
113GACTCGTACCCAATGGCACTC12,335,170c21Separator000000000000000000000000000000000000000000000040000000000000000
114GACTCGTACCCAATGGCACTCAGC12,335,170c24Separator000000000000000000000000000000000000000000001000000000000000000
115GGACTCGTACCCAATGGCACTCAG12,335,171c24Separator000000000000000000000000100000000000000000000000000000060000000
116CGGACTCGTACCCAATGGCAC12,335,172c21Separator0000000000000000000000000000000000000000000000000000000000001200
117CCGGACTCGTACCCAATGGCAC12,335,173c22Separator000000000000000000000000000000000000000000000000001000000000000
118CCGGACTCGTACCCAATGGCACTC12,335,173c24Separator000000000000000000000010000000000000000000000000000000000000000
119CCCGGACTCGTACCCAATGGC12,335,174c21Separator000000000000000000000000000000000000000000000000000050000000000
120ACCCGGACTCGTACCCAATGGCAC12,335,175c24Separator000000000040000000000000000000000000000000000100100000000000010
121GACCCGGACTCGTACCCAATGGCA12,335,176c24Separator000000000000001000000000000000000000000000001000000000000000001
122TGACCCGGACTCGTACCCAAT12,335,177c21Separator000000000000000000000000000000000000000000000000001050000000000
123TGACCCGGACTCGTACCCAATGGC12,335,177c24Separator000000000000000000000000000000000000000004000000000001000001000
124GTAACGGCTAGGTTGGCCTGT12,335,179w21Separator000000000000000000000000000000000000000000000100000000000000000
125TAGCCGTTACCTGACCCGGAC12,335,188c21Separator000000000000000000000000000000000000000000001100000000000000001
126AAAGATTCCACAGGCCAACCT12,335,208c21Separator0000000000000000000000000000000000000000000011000000500000100010
127CAACTGAAGATGCCCGCTCC12,335,211w20Separator000000000000000000000000000000000000000000000100000000000700000
128CAACTGAAGATGCCCGCTCCT12,335,211w21Separator000000000000000000000000000000000000000000002103201104000001058
129CAACTGAAGATGCCCGCTCCTG12,335,211w22Separator000000000000000000000000000000000000000000001000000000000000000
130AACTGAAGATGCCCGCTCCTG12,335,212w21Separator000000000000000000000000000000000000000000000000000000000000001
131CTGAAGATGCCCGCTCCTGAT12,335,214w21Separator000000000000000000000000000000000000000000000000000000000000001
132CCGCTCCTGATCAAGTTACAAGAG12,335,224w24Separator000000000000000000000000000000000000000000000100000000000000000
133GAGCGGGCATCTTCAGTTGTG12,335,229c21Separator000000000000000000000000000000000000000000000000000000000000001
134GATCAAGTTACAAGAGACAGAGCA12,335,232w24Separator000000000000000000000000000000000000000000000000001000000000000
135TGATCAGGAGCGGGCATCTTC12,335,236c21Separator000000000000000000000000000000000000000000000000000000008000000
136GTTACAAGAGACAGAGCAGCGACG12,335,238w24Separator000000000000000000000000000000000000000010000000000000000000000
137ACTTGATCAGGAGCGGGCATCTT12,335,239c23Separator000000000000000000000000000000001000000000000000000000000000000
138TACAAGAGACAGAGCAGCGACGAC12,335,240w24Separator000000000000000000100000000000000000000000000000000000000000000
139ACAAGAGACAGAGCAGCGACGACC12,335,241w24Separator000000000000000010000000000000000000000000000000000000000000000
140TAACTTGATCAGGAGCGGGCA12,335,241c21Separator000000000000000000000000000000000000000000000001000000000000000
141CAAGAGACAGAGCAGCGACGA12,335,242w21Separator000000000000000000000000000000000000000000000000000000000001000
142AAGAGACAGAGCAGCGACGA12,335,243w20Separator000000000000000000100000000000000000000000000000000000000000000
143AAGAGACAGAGCAGCGACGAC12,335,243w21Separator000000000000000000000000100000000000000000000000000000000000000
144TGTAACTTGATCAGGAGCGGGCAT12,335,243c24Separator090000000000000000000000000000000000000000000000000000000000000
145ACAGAGCAGCGACGACCGAACTAT12,335,248w24Separator000000001000000000001000000000000000000000000000000000000000000
146AGAGCAGCGACGACCGAACTAT12,335,250w22Separator000000000000000000000000000000000000100000000000000000000000000
147TGTCTCTTGTAACTTGATCAG12,335,250c21Separator000000000000000000000000000000000000000000001301000000000000001
148GAGCAGCGACGACCGAACTATTG12,335,251w23Separator000000001000000000000000000000000000000000000000000000000000000
149GAGCAGCGACGACCGAACTATTGT12,335,251w24Separator000000000000000000000000000000000000000010000000000000000000000
150GCAGCGACGACCGAACTATTG12,335,253w21Separator000000000000000000000000000000000000000000000100000000000000001
151GCAGCGACGACCGAACTATTGT12,335,253w22Separator000000000000000000000000000000000000000000000000000000000000001
152CAGCGACGACCGAACTATTGTCAT12,335,254w24Separator000000000000001000000000000000000000000000000100000000000000000
153ACCGAACTATTGTCATACCGG12,335,262w21Separator000000000000000000000000000000000000000000000000000000000000001
154TAGTTCGGTCGTCGCTGCTC12,335,270c20Separator000000000000000000000000000000000000000000001000000000000000000
155ATAGTTCGGTCGTCGCTGCTC12,335,271c21Separator000000000000000000000000000000000000000000001001001000000000002
156AATAGTTCGGTCGTCGCTGCTC12,335,272c22Separator000000000000000000000000000000000000000000000100000000000000000
157GTCATACCGGAGGGAACAAAAACGG12,335,273w25Separator000000000000000000000000000000000000000000000000100000000000000
158TCATACCGGAGGGAACAAAAA12,335,274w21Separator000000000000000000000000000000000000000000000200000106000000010
159TCATACCGGAGGGAACAAAAACGG12,335,274w24Separator000000100000000000000000000000000000000000000100001000000000000
160GACAATAGTTCGGTCGTCGCTGCT12,335,275c24Separator000000000000001000000000000000000000000000000000000000000000000
161ATACCGGAGGGAACAAAAACGGA12,335,276w23Separator000000001000000000000000000000000000000000000000000000000000000
162TGACAATAGTTCGGTCGTCGC12,335,276c21Separator000000000000000000000000000000000000000000000000000000000000001
163TACCGGAGGGAACAAAAACGGAAT12,335,277w24Separator000000000000000000000000000000000000000000000000001100000001010
164TATGACAATAGTTCGGTCGTC12,335,278c21Separator000000000000000000000000000000000000000000000001000000000000000
165CCGGAGGGAACAAAAACGGAA12,335,279w21Separator000000000000000000000000000000000000000000000000000000060000000
166TTTGTTCCCTCCGGTATGACA12,335,292c21Separator000000000000000000000000000000000000000000000000041000000001011
167TTTTTGTTCCCTCCGGTATGAC12,335,294c22Separator000000000000000000000000000000000000000000000001000000000000000
168TGACGGCAATGACATGGTTTC12,335,332c21Separator000000000000000000000000000000000000000000000000000000000000001
169TGTGACGGCAATGACATGGTT12,335,334c21Separator000000000000000000000000000000000000000000001100101100000001000
170TCTTCTTCCTTCTTCTCT52,335,345w18Separator000000000000000000000000000000000000000000000000000000000000010
171AAAAGAGAAGAAGGAAGAAGATAA12,335,365c24Separator000000010000000000000000000000000000000000000000000000000000000
172CAGCAAACTCTTTGATGCGGCGGC12,335,380w24Separator000000000000000000000000000000000000000000000000100000000000000



Number of unique reads retrieved on this page: 170