Rice small RNA Information



Reads existing in this region (Chr 1, 2,230,870 - 2,231,457):  1 - 131 of 131      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorWT2003sWT2007sWT2011sT2iZ11RT2iZ11ST4iZ11ST4iZ11RT6iZ11RT6P9RT6Sp1RAGO18IP_RSV1AGO18IP_RSV2AGO1bIP_RSV2AGO1aIP_RSV1AGO1aIP_RSV2AGO1bIP_RSV1wt_kit_adultmiR2_adultmiR7b_adultmiR8_adultmiR390_KO1miR390_KO2wt390r1wt390r2
Signature abundances normalized to (varies by library depth): Separator10M10M10M10M10M10M10M10M10M10M500K500K500K500K500K500K20M20M20M20M20M20M20M20M
1AAACTGCATGGATAGGATCGGTGC12,230,870c24Separator000000000000000000000001
2AGGAAACTGCATGGATAGGATCGG12,230,873c24Separator000000000000000000000001
3TACATACATATATATATATATA5662,230,893w22Separator001000000000000000000000
4ATATATATATATATATATA195,4352,230,900w19Separator000000100000000000000000
5TATATATATATATATATAT195,4352,230,901w19Separator000000000010000000000000
6TATATGTATGTATATGTA1582,230,904c18Separator000000030000000000000000
7TATATATATATATATGTATG6712,230,905w20Separator000100000000000000000000
8ATATATATATATATGTATGTA5812,230,906w21Separator000000000001000000000000
9ATATATATATATATGTATGTA5812,230,913c21Separator000000000001000000000000
10TATATATATATATATGTATG6712,230,914c20Separator000100000000000000000000
11TATATATATATATATATAT195,4352,230,918c19Separator000000000010000000000000
12ATATATATATATATATATA195,4352,230,919c19Separator000000100000000000000000
13TACATACATATATATATATATA5662,230,926c22Separator001000000000000000000000
14AAGCAACTTCTAATATACTGACGT12,230,952w24Separator001040000000000000301111
15AAGCAACTTCTAATATACTGACGTG12,230,952w25Separator000000000000000000001000
16AGAAGTTGCTTGCATCTAAAAGAA12,230,962c24Separator000001000000000000000000
17AATATACTGACGTGCAATTAATCT12,230,963w24Separator000000000000000010001000
18TGCACGTCAGTATATTAGAAGTT12,230,978c23Separator000000000000000000000100
19TTGCACGTCAGTATATTAGAAG42,230,979c22Separator000000100000000000000000
20TTGCACGTCAGTATATTAGAAGT12,230,979c23Separator001000000000000000000000
21ATTGCACGTCAGTATATTAGAAG42,230,980c23Separator000000000000000000010000
22ATTGCACGTCAGTATATTAGAAGT12,230,980c24Separator000000000000000010000000
23AATTGCACGTCAGTATATTAGAAG22,230,981c24Separator000001000000000000000000
24AAAAGATTAATTGCACGTCAGTAT12,230,989c24Separator000000000000000010000000
25GAAAAAGATTAATTGCACGTC12,230,991c21Separator000000000000000000000001
26GAAAAAGATTAATTGCACGTCAGT12,230,991c24Separator000000000000000000000001
27GAAAAAGATTAATTGCACGTCAGTAT12,230,991c26Separator000000000000000000001000
28CGAAAAAGATTAATTGCACGTCAGT12,230,992c25Separator000000000000000000000100
29CGGTGGAATCTCCAGTGTCGA12,231,113c21Separator000000000000000100000000
30TACGAGGATGATTTCGACTGA12,231,165w21Separator000000000000000000010000
31ACGAGGATGATTTCGACTGATGGA12,231,166w24Separator000000000000000000000010
32TCGACTGATGGAAGAGAGGAT12,231,178w21Separator000000000000000000050000
33GAAAGAAGTATAGCAGAGGT12,231,221w20Separator000000000000000100000000
34TGACAAGAACAGAAGAGGGAT12,231,264w21Separator000000000000000100000000
35CTCTTCTGTTCTTGTCACGTG12,231,280c21Separator000000000000000000020000
36AAGTTCGCTGTTGATTGATCC12,231,301c21Separator000000000000000000010000
37AATTGTTGACAACTGAAATAGACA12,231,324c24Separator000000000000000000001100
38TTGTCGTCGCAATTGTTGACAACT12,231,334c24Separator000000000000000000001000
39TCCGTGAGATCTTTTTTTCCT12,231,376w21Separator000000000000000000000100
40TCACGGAAAAGAAAAAAAAAGGGC12,231,382c24Separator000000000000000000000100
41TTTTTCCTAATGACATAACAACTT12,231,389w24Separator000000000000000000000010
42TTTTTCCTAATGACATAACAACTTT12,231,389w25Separator000000000000000000000100
43TTTTCCTAATGACATAACAACTT12,231,390w23Separator000000000000000000001000
44TTTTCCTAATGACATAACAACTTT12,231,390w24Separator000000000000000000001000
45TTTCCTAATGACATAACAACTT12,231,391w22Separator000000000000000001000000
46TTCCTAATGACATAACAACTT12,231,392w21Separator003000000000000000000000
47CTAATGACATAACAACTTTTAGCT12,231,395w24Separator000000000000000000005000
48TAATGACATAACAACTTTTAGC12,231,396w22Separator000000000000000000010100
49TAATGACATAACAACTTTTAGCT12,231,396w23Separator000000000000000000001001
50AATGACATAACAACTTTTAGCTAT12,231,397w24Separator200010020000000000005324
51AATGACATAACAACTTTTAGCTATA12,231,397w25Separator000000000000000000010100
52TAGGAAAAAAAGATCTCACGGA12,231,397c22Separator000000000000000000000001
53ATGACATAACAACTTTTAGCTATA12,231,398w24Separator003000000000000000012311
54ATGACATAACAACTTTTAGCTATAA12,231,398w25Separator000000000000000000000001
55ATGACATAACAACTTTTAGCTATAAAT12,231,398w27Separator000000000000000000001000
56ATAACAACTTTTAGCTATAAATCT72,231,403w24Separator000100000000000000004451
57AACAACTTTTAGCTATAAATCTGG42,231,405w24Separator000000000000001000000000
58AACAACTTTTAGCTATAAATCTGGA32,231,405w25Separator000000000000000000000110
59ACAACTTTTAGCTATAAATCTGGA32,231,406w24Separator000000000700000000021524
60TTATGTCATTAGGAAAAAAAGATCT12,231,406c25Separator000000000000000000000010
61CAACTTTTAGCTATAAATCTGGA42,231,407w23Separator000000000000000000000010
62AACTTTTAGCTATAAATCTGGA62,231,408w22Separator000000000000000000000011
63AACTTTTAGCTATAAATCTGGACA42,231,408w24Separator100203201000000000006885
64AACTTTTAGCTATAAATCTGGACAC42,231,408w25Separator000000000000000000001000
65ACTTTTAGCTATAAATCTGGAC52,231,409w22Separator000000000000000000001000
66ACTTTTAGCTATAAATCTGGACA42,231,409w23Separator000000000000000000000020
67ACTTTTAGCTATAAATCTGGACAC42,231,409w24Separator0000124310000000673421182016
68ACTTTTAGCTATAAATCTGGACACA42,231,409w25Separator000010000000000000011111
69CTTTTAGCTATAAATCTGGACACA42,231,410w24Separator000002000000000000000010
70AGTTGTTATGTCATTAGGAAAAAA12,231,411c24Separator000000000000000000000100
71TTTTAGCTATAAATCTGGA362,231,411w19Separator000000000000000000001000
72TTTTAGCTATAAATCTGGAC282,231,411w20Separator003000000000000000000000
73TTTTAGCTATAAATCTGGACA272,231,411w21Separator000000000000000000021100
74TTTTAGCTATAAATCTGGACAC92,231,411w22Separator000000000000000000001102
75TTTTAGCTATAAATCTGGACACAT12,231,411w24Separator000000100000000000001110
76AAGTTGTTATGTCATTAGGAAAAA12,231,412c24Separator000000000001000000000000
77TTTAGCTATAAATCTGGACA282,231,412w20Separator000000000000000000000112
78TTTAGCTATAAATCTGGACAC102,231,412w21Separator000000000000000010000001
79TTTAGCTATAAATCTGGACACATA12,231,412w24Separator000000200000000000000100
80TTAGCTATAAATCTGGAC302,231,413w18Separator000000100010000000000301
81TTAGCTATAAATCTGGACA292,231,413w19Separator000000100000000000001301
82TTAGCTATAAATCTGGACACATA22,231,413w23Separator000000000000000001002000
83TTAGCTATAAATCTGGACACATAG12,231,413w24Separator000000000000000000000001
84AAAAGTTGTTATGTCATTAGGAAA12,231,414c24Separator000110000001001000000000
85TAGCTATAAATCTGGACAC182,231,414w19Separator000000000000000000010000
86AGCTATAAATCTGGACACATAGTT12,231,415w24Separator000380120001000072304312
87GCTATAAATCTGGACACATAGT12,231,416w22Separator000000000000000100000000
88AGCTAAAAGTTGTTATGTCATTAG12,231,418c24Separator000000000000000001000000
89TATAAATCTGGACACATAGT12,231,418w20Separator100000000000000000100000
90TATAAATCTGGACACATAGTT12,231,418w21Separator000020000000000010000000
91TATAAATCTGGACACATAGTTGTC12,231,418w24Separator000000300000000000000000
92ATAAATCTGGACACATAGTT12,231,419w20Separator000000000000000000001100
93ATAAATCTGGACACATAGTTGT12,231,419w22Separator000000000000000000001110
94ATAAATCTGGACACATAGTTGTC12,231,419w23Separator000000000000000000011110
95ATAAATCTGGACACATAGTTGTCT12,231,419w24Separator000000000000000000000001
96TAAATCTGGACACATAGTT12,231,420w19Separator000000000000000000010100
97TAAATCTGGACACATAGTTG12,231,420w20Separator000000000000000030100001
98TAAATCTGGACACATAGTTGT12,231,420w21Separator000000000000000000010001
99AAATCTGGACACATAGTTG12,231,421w19Separator000000000010000000000000
100AAATCTGGACACATAGTTGT12,231,421w20Separator000000000000000000000011
101TATAGCTAAAAGTTGTTATG12,231,421c20Separator000000000000000000000001
102TATAGCTAAAAGTTGTTATGTC12,231,421c22Separator000000000000000000000010
103AATCTGGACACATAGTTGT62,231,422w19Separator000000000000000000000100
104TTTATAGCTAAAAGTTGT122,231,423c18Separator000001000000000000000000
105CCAGATTTATAGCTAAAAGTTGT42,231,428c23Separator000000000000000000000010
106TCCAGATTTATAGCTAAAAGTTG42,231,429c23Separator000000000000000000010000
107GTCCAGATTTATAGCTAAAAGTT52,231,430c23Separator000000000000000000001022
108GTCCAGATTTATAGCTAAAAGTTG32,231,430c24Separator000000000000001001001100
109ACATAGTTGTCTAATTTTATAGCT12,231,431w24Separator000000000000000000001000
110TGTCCAGATTTATAGCTAAAAGT42,231,431c23Separator000000000000000000000001
111TGTCCAGATTTATAGCTAAAAGTT42,231,431c24Separator000000000000000000000010
112CATAGTTGTCTAATTTTATAGCT12,231,432w23Separator000000000100000000000000
113GTGTCCAGATTTATAGCT182,231,432c18Separator000000000000000000000010
114GTGTCCAGATTTATAGCTAAAAGT42,231,432c24Separator000000000000000000000001
115GTGTCCAGATTTATAGCTAAAAGTT42,231,432c25Separator000000000000000000000100
116TGTGTCCAGATTTATAGCT102,231,433c19Separator001000000000000000011000
117TGTGTCCAGATTTATAGCTAAAAG42,231,433c24Separator000000000000000000000001
118ATGTGTCCAGATTTATAGC52,231,434c19Separator000001000000000000000000
119ATGTGTCCAGATTTATAGCTAAAA12,231,434c24Separator000000000000000000101000
120TATGTGTCCAGATTTATAGCT22,231,435c21Separator000000000000000000100021
121CTATGTGTCCAGATTTAT12,231,436c18Separator000400000000000000000000
122CTATGTGTCCAGATTTATAG12,231,436c20Separator000000000000000010000000
123AACTATGTGTCCAGATTTATAGCT12,231,438c24Separator000000000000000012010001
124ATTAGACAACTATGTGTCCAGATT12,231,445c24Separator000000000000000000001010
125AATTAGACAACTATGTGTCCAGAT12,231,446c24Separator000000200000200000000000
126AAAAATACTTATGTTTTGGGAC22,231,455w22Separator000000000000000004001000
127AAAAATACTTATGTTTTGGGACG22,231,455w23Separator000001000000000000002000
128AAAAATACTTATGTTTTGGGACGG22,231,455w24Separator000000000010000030112030
129AAAATACTTATGTTTTGGGACG22,231,456w22Separator000000000000000000001000
130AAAATACTTATGTTTTGGGACGGA22,231,456w24Separator000000000000000000100001
131AAATACTTATGTTTTGGGACGGAG22,231,457w24Separator000000000001000000000000



Number of unique reads retrieved on this page: 73