Rice small RNA Information



Reads existing in this region (Chr 1, 2,230,870 - 2,231,457):  1 - 229 of 229      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorYL9522_S3_1YL9522_S3_2YL9522_S3_3YL9522_S5_1YL9522_S5_2YL9522_S5_3YL9522_S7_1YL9522_S7_2YL9522_S7_3msp1_S3_1msp1_S3_2msp1_S3_3msp1_S5_1msp1_S5_2msp1_S5_3msp1_S7_1msp1_S7_2msp1_S7_3ostdl1a_S3_1ostdl1a_S3_2ostdl1a_S3_3ostdl1a_S5_1ostdl1a_S5_2ostdl1a_S5_3ostdl1a_S7_1ostdl1a_S7_2ostdl1a_S7_3
Signature abundances normalized to (varies by library depth): Separator5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M
1AAACTGCATGGATAGGATCGGTG12,230,870c23Separator000000000000001000000010000
2GGAAACTGCATGGATAGGATCGG12,230,872c23Separator000000000000000000001000000
3GGAAACTGCATGGATAGGATCGGT12,230,872c24Separator000000000000000000001000000
4AGGAAACTGCATGGATAGGATCGG12,230,873c24Separator000001000000100000200020020
5AAGGAAACTGCATGGATAGGATCG12,230,874c24Separator000000000000000000020000010
6ACAAGGAAACTGCATGGATAG12,230,876c21Separator000000000000010100000000000
7ACAAGGAAACTGCATGGATAGGAT12,230,876c24Separator000000000000000000020000000
8TACAAGGAAACTGCATGGATA12,230,877c21Separator000000000000000000000000010
9CTACAAGGAAACTGCATGGAT12,230,878c21Separator000000000000000000000000010
10TCTACAAGGAAACTGCATGGATAG12,230,879c24Separator000000000000000000010000000
11AAGCAACTTCTAATATACTGACGT12,230,952w24Separator010000000100000000100010000
12GCAACTTCTAATATACTGACGTG12,230,954w23Separator000000000000000001000000000
13AACTTCTAATATACTGACGTGCAA12,230,956w24Separator001010000000000000000000000
14TTCTAATATACTGACGTGCAA52,230,959w21Separator000010000000000000000000000
15TCTAATATACTGACGTGCAAT62,230,960w21Separator000000000000000000000000001
16AATATACTGACGTGCAATTAATCT12,230,963w24Separator100000000030100010010201000
17ATATACTGACGTGCAATTAATCT12,230,964w23Separator000000000000001000000000000
18ATATACTGACGTGCAATTAATCTT12,230,964w24Separator100100000002001001000100000
19ATATACTGACGTGCAATTAATCTTT12,230,964w25Separator000000010000000000000000000
20TATACTGACGTGCAATTAATCTT12,230,965w23Separator000000000000000000000000010
21ATACTGACGTGCAATTAATCTTTT12,230,966w24Separator110000000020000000000000000
22TATATTAGAAGTTGCTTGCAT12,230,968c21Separator000010000000000000000000000
23AATTGCACGTCAGTATATTAGAAG22,230,981c24Separator000000000000000000000000100
24AAGATTAATTGCACGTCAGTATAT12,230,987c24Separator000000000001000000100000000
25AAAAGATTAATTGCACGTCAGTAT12,230,989c24Separator020000000000000000000000000
26AAAAGATTAATTGCACGTCAGTATA12,230,989c25Separator001000000000000000000000000
27GCGAAAAAGATTAATTGCACGTCA12,230,993c24Separator000000010000000000001000000
28ATTCGAAAAAAACAGGTGCATGCA12,230,996w24Separator000000000100000000000000000
29ATGCGCGAAAAAGATTAATTGCAC12,230,997c24Separator000000000000000001000000000
30TTCGAAAAAAACAGGTGCATGCAT12,230,997w24Separator000000001000000000000000000
31ATATCATGCATGCACCTGTTT12,231,025c21Separator000000000000000000000100000
32ACAATATCATGCATGCACCTG12,231,028c21Separator000000000000000000000010000
33ACAATATCATGCATGCACCTGTTT12,231,028c24Separator000000000000000010000000000
34TTACAGTATCATGTAGGATTGGGAG12,231,028w25Separator000000000000000000000010000
35CAGTATCATGTAGGATTGGGAGGCA12,231,031w25Separator000000000100000000000000000
36AGTATCATGTAGGATTGGGAGGC12,231,032w23Separator000000000000000000010000000
37AGTATCATGTAGGATTGGGAGGCA12,231,032w24Separator001101000000000000010000000
38GTATCATGTAGGATTGGGAGGCA12,231,033w23Separator000000000000000000000110001
39GTATCATGTAGGATTGGGAGGCAT12,231,033w24Separator000000000220000000112201000
40TATCATGTAGGATTGGGAGGCATA12,231,034w24Separator100000000000000000000000000
41ATCATGTAGGATTGGGAGGCATA12,231,035w23Separator000000000000010000000000000
42ATCATGTAGGATTGGGAGGCATAA12,231,035w24Separator000000000000000000002010000
43GATACTGTAACAATATCATGCATG12,231,037c24Separator000000000000000000010000000
44ATGTAGGATTGGGAGGCATAAAAA12,231,038w24Separator000000010000000000000000000
45GTAGGATTGGGAGGCATAAAAAAT12,231,040w24Separator001000000000000000000000000
46AGGATTGGGAGGCATAAAAAATGT12,231,042w24Separator000000000000000000000001000
47AGGATTGGGAGGCATAAAAAATGTG12,231,042w25Separator000000000000000000100000000
48TGTCCACAACGAAAGCTTTTC12,231,074w21Separator000100000000000000000001100
49CGAAAGCTTTTCGACACTGGA12,231,083w21Separator000000000000000000000000100
50AAGCTTTTCGACACTGGAGAT12,231,086w21Separator000000000000000000000110000
51AAGCTTTCGTTGTGGACACA12,231,091c20Separator000000000000001000000000000
52AAGCTTTCGTTGTGGACACAT12,231,091c21Separator000000000000000000000000010
53AAAGCTTTCGTTGTGGACAC12,231,092c20Separator000000000000001000000010000
54AAAGCTTTCGTTGTGGACACA12,231,092c21Separator56251677310261216465867431284053793152111866884
55AAAGCTTTCGTTGTGGACACAT12,231,092c22Separator000000000000000010000100000
56AAAAGCTTTCGTTGTGGACACA12,231,093c22Separator000210100000000020000120100
57TCGACACTGGAGATTCCACCGGAC12,231,093w24Separator010000000000000000000000000
58CGAAAAGCTTTCGTTGTGGACAC12,231,095c23Separator000000000000000000000001000
59GACACTGGAGATTCCACCGGA12,231,095w21Separator000012000000011000000033102
60ACACTGGAGATTCCACCGGAC12,231,096w21Separator001000010000000000000010111
61GTCGAAAAGCTTTCGTTGTGGACA12,231,097c24Separator000000000000000010010000000
62GGAGATTCCACCGGACAGCAT12,231,101w21Separator000000000000000000001001010
63TTCCACCGGACAGCATCGGTTT12,231,106w22Separator000000100000000000000000000
64TCCACCGGACAGCATCGGTTT12,231,107w21Separator000010100000001010000000100
65CGGTGGAATCTCCAGTGTCGA12,231,113c21Separator10002502310106304501051549912
66CGGTGGAATCTCCAGTGTCGAA12,231,113c22Separator000000000010000000000000000
67CCGGTGGAATCTCCAGTGTCG12,231,114c21Separator000000000000000000000000100
68CAGCATCGGTTTGAAGGTGCG12,231,116w21Separator000200000000022000000000001
69ACCGATGCTGTCCGGTGGAAT12,231,125c21Separator000000000000000000000010000
70ACCGATGCTGTCCGGTGGAATCTCC12,231,125c25Separator000000000000000000000000010
71CTTCAAACCGATGCTGTCCGG12,231,131c21Separator000000100000000000000000000
72CCTTCAAACCGATGCTGTCCG12,231,132c21Separator000000000000001000000000000
73CACCTTCAAACCGATGCTGTC12,231,134c21Separator000000100000000000000020220
74ATCGATAACTTGGTTCAGCAA12,231,137w21Separator000121011000123000000002301
75CGATCGCACCTTCAAACCGAT12,231,140c21Separator000001000000000000000000000
76AGTTATCGATCGCACCTTCAA12,231,146c21Separator000011000000001000000000000
77TTGGTTCAGCAAGCTTCGGTA12,231,146w21Separator000000000000000000000000001
78AAGTTATCGATCGCACCTTCA12,231,147c21Separator000000000000000000000010000
79GAACCAAGTTATCGATCG12,231,152c18Separator000001000000101000000000111
80TGAACCAAGTTATCGATCG12,231,153c19Separator000100000000000010000100100
81TGAACCAAGTTATCGATCGCA12,231,153c21Separator000000000000000000100001000
82CTGAACCAAGTTATCGATCG12,231,154c20Separator000010000000000000000000100
83GCTGAACCAAGTTATCGA12,231,155c18Separator000000010100100000000030000
84GCTGAACCAAGTTATCGATCG12,231,155c21Separator520203446143672641783919173024650131114642755
85TGCTGAACCAAGTTATCGATC12,231,156c21Separator000000001000000000000011000
86GCTTCGGTACGAGGATGATT12,231,158w20Separator000000000000000000000010000
87GCTTCGGTACGAGGATGATTT12,231,158w21Separator010105000000451021000384609
88GCTTCGGTACGAGGATGATTTCGA12,231,158w24Separator000000000000010000000000000
89CTTCGGTACGAGGATGATTTC12,231,159w21Separator000000000000000000000000100
90GGTACGAGGATGATTTCGACTG12,231,163w22Separator000000000000000000010000000
91CCTCGTACCGAAGCTTGCTGA12,231,171c21Separator000000000000000001000000000
92ATCATCCTCGTACCGAAGCTT12,231,176c21Separator000100000000001000000000000
93TTCGACTGATGGAAGAGAGGA12,231,177w21Separator000000000000000000000100000
94TCGACTGATGGAAGAGAGGAT12,231,178w21Separator000000000000000000000000010
95CGACTGATGGAAGAGAGGA12,231,179w19Separator000000100000000100000100000
96CGACTGATGGAAGAGAGGAT12,231,179w20Separator000001000000000111000031101
97CGACTGATGGAAGAGAGGATA12,231,179w21Separator31420193316108432515447536954377729783110155121
98GACTGATGGAAGAGAGGATAC12,231,180w21Separator000000000000000001000000000
99ACTGATGGAAGAGAGGATACTGAT12,231,181w24Separator000000000000000000000001010
100CTGATGGAAGAGAGGATACTG12,231,182w21Separator000000000000000000000001000
101TCTTCCATCAGTCGAAATCAT12,231,192c21Separator000000000000000000000100000
102TCCTCTCTTCCATCAGTCGAA12,231,197c21Separator000111001000123022000011221
103TACTGATCTATACTGAGGGGT12,231,198w21Separator000000000000010000000000000
104CTGATCTATACTGAGGGGTTG12,231,200w21Separator001673241000131131120001458999
105ACCCCTCAGTATAGATCAGTA12,231,218c21Separator100021010010000000000000000
106TTGGAAAGAAGTATAGCAGAG12,231,218w21Separator000000000000000000000101000
107GAAAGAAGTATAGCAGAGG12,231,221w19Separator000000000000010000000000000
108GAAAGAAGTATAGCAGAGGTC12,231,221w21Separator000213601000111100000135210
109GAAAGAAGTATAGCAGAGGTCT12,231,221w22Separator001000000000000000000000000
110AAAGAAGTATAGCAGAGGTCT12,231,222w21Separator000000000000000000000000100
111CTCTGCTATACTTCTTTCCA12,231,238c20Separator000000000000000000000001000
112CCTCTGCTATACTTCTTTCCA12,231,239c21Separator000011001000100020000434223
113TTTGCTGCTTGTTTCGATCAC12,231,242w21Separator000000000000110100000210210
114TTTGCTGCTTGTTTCGATCACG12,231,242w22Separator000000000000010000000000000
115TGCTGCTTGTTTCGATCACGTGAC12,231,244w24Separator000000000000000000000001000
116CAGCAAAGACCTCTGCTATAC12,231,248c21Separator000000000000000000000000001
117GCAGCAAAGACCTCTGCTATAC12,231,249c22Separator000000000000000000010000000
118AAGCAGCAAAGACCTCTGCTA12,231,251c21Separator000000000000010000000000001
119TGTTTCGATCACGTGACAAG12,231,251w20Separator000000000000010000000000000
120CAAGCAGCAAAGACCTCTGCT12,231,252c21Separator000000100000000000000000000
121AACAAGCAGCAAAGACCTCTG12,231,254c21Separator000000000000010000000010100
122AAACAAGCAGCAAAGACCTCT12,231,255c21Separator000000100000000000000000200
123CGAAACAAGCAGCAAAGACCTCTG12,231,257c24Separator000000000000010000000000000
124TCACGTGACAAGAACAGAAGA12,231,259w21Separator000000000000000000000001000
125CACGTGACAAGAACAGAAGAGGGA12,231,260w24Separator000000000000010000000000000
126ACGTGACAAGAACAGAAGAGGGAT12,231,261w24Separator000000000000100000000000000
127TGATCGAAACAAGCAGCAAAG12,231,261c21Separator000000000000000000000100000
128CGTGACAAGAACAGAAGAGGG12,231,262w21Separator000212121000211101100213142
129GTGACAAGAACAGAAGAGGG12,231,263w20Separator000000000000000000000001000
130GTGACAAGAACAGAAGAGGGA12,231,263w21Separator12391435208152012328136331021636401049
131GTGACAAGAACAGAAGAGGGATCA12,231,263w24Separator000000000000000000000000200
132TGACAAGAACAGAAGAGGG12,231,264w19Separator000000000000000100000000000
133TGACAAGAACAGAAGAGGGA12,231,264w20Separator000000000000100100000000000
134TGACAAGAACAGAAGAGGGAT12,231,264w21Separator1013442321015442420101513107113
135TGACAAGAACAGAAGAGGGATC12,231,264w22Separator000000000000000000000100000
136ACAAGAACAGAAGAGGGATCA12,231,266w21Separator000000000000000010000000000
137CCTCTTCTGTTCTTGTCACGT12,231,281c21Separator000110001000001001000000110
138TCAATCAACAGCGAACTTGTC12,231,284w21Separator000222220000304022000130622
139CAAGTTCGCTGTTGATTGATC12,231,302c21Separator000000000000000000000001000
140GACAAGTTCGCTGTTGATTGATC12,231,304c23Separator000000000000000010000000000
141TATTTCAGTTGTCAACAATTG12,231,305w21Separator000000000000001000000000000
142ATAGACAAGTTCGCTGTTGATTGA12,231,307c24Separator000000000000100000000000000
143TTGTCAACAATTGCGACGACA12,231,313w21Separator000000000000000000000000001
144ACAACTGAAATAGACAAGTTCG12,231,316c22Separator000010000000000000000000000
145TGCGACGACAATTAATGCATT12,231,324w21Separator000000000000000000000000100
146GCGACGACAATTAATGCATTT12,231,325w21Separator000000000000000000000010000
147CGACGACAATTAATGCATTTT12,231,326w21Separator000200100000001000000000100
148GCATTAATTGTCGTCGCAA12,231,341c19Separator000000000000000000000000100
149ATGCATTAATTGTCGTCGCAA12,231,343c21Separator000000000010353231011220811115
150ATGCATTAATTGTCGTCGCAAT12,231,343c22Separator000000000000000010000000000
151AATGCATTAATTGTCGTCGCA12,231,344c21Separator2112234121728170016115632000131000
152AAATGCATTAATTGTCGTCGC12,231,345c21Separator000122171000212113001000000
153AAATGCATTAATTGTCGTCGCA12,231,345c22Separator000010000000000000000000000
154AAAATGCATTAATTGTCGTCGC12,231,346c22Separator000000000000000001000000000
155AAAATGCATTAATTGTCGTCGCA12,231,346c23Separator000010010000000000000000000
156AAAATGCATTAATTGTCGTCGCAA12,231,346c24Separator000000000000000100000101011
157GAAAATGCATTAATTGTCGTCGCA12,231,347c24Separator000011020000000001000000000
158GGAAAATGCATTAATTGTCGTCGC12,231,348c24Separator000010000000100010000000000
159AGTAGAGGAAAATGCATTAATTGT12,231,354c24Separator000000000000000000000010000
160AAAGTAGAGGAAAATGCATTA12,231,356c21Separator000010000000000000000000000
161TAAAGTAGAGGAAAATGCATT12,231,357c21Separator000000000000000000000010000
162TTAAAGTAGAGGAAAATGCAT12,231,358c21Separator000000000000000000000100000
163CTTAAAGTAGAGGAAAATGCA12,231,359c21Separator000010000000100000000000000
164GGGCTTAAAGTAGAGGAAAATGCA12,231,362c24Separator010000000000000001100000000
165AGGGCTTAAAGTAGAGGAA12,231,363c19Separator000000010000000000000000000
166AGGGCTTAAAGTAGAGGAAAATGC12,231,363c24Separator100000010001010100101000000
167AAGGGCTTAAAGTAGAGGA12,231,364c19Separator000000000000000000000010000
168AAGGGCTTAAAGTAGAGGAA12,231,364c20Separator000002100000020000000010001
169AAGGGCTTAAAGTAGAGGAAA12,231,364c21Separator000000000000000000000252000
170AAAGGGCTTAAAGTAGAGGA12,231,365c20Separator000000000000100002000000000
171AAAGGGCTTAAAGTAGAGGAA12,231,365c21Separator041181626141924012112313152220000124297
172AAAGGGCTTAAAGTAGAGGAAA12,231,365c22Separator000000000000010000000000000
173AAAGGGCTTAAAGTAGAGGAAAAT12,231,365c24Separator000000001000000000000000000
174AAAGGGCTTAAAGTAGAGGAAAATG12,231,365c25Separator000000000000100000000000000
175AAAAGGGCTTAAAGTAGAGGA12,231,366c21Separator000010001001001112000000000
176AAAAGGGCTTAAAGTAGAGGAAAA12,231,366c24Separator000000000000000010000000000
177AAAAGGGCTTAAAGTAGAGGAAAAT12,231,366c25Separator100000000000000000000000000
178AAAAAGGGCTTAAAGTAGAGGAA12,231,367c23Separator000000001020100000000020100
179AAAAAGGGCTTAAAGTAGAGGAAA12,231,367c24Separator000000000010000000100112213
180AAAAAAGGGCTTAAAGTAGAGGA12,231,368c23Separator000010000000000010000000000
181AAAAAAGGGCTTAAAGTAGAGGAA12,231,368c24Separator002313000100000231000001001
182AAAAAAAGGGCTTAAAGTAGAGGA12,231,369c24Separator000001000001000000000000000
183AAAAAAAAGGGCTTAAAGTAGAGG12,231,370c24Separator000000000000000010000000000
184CGGAAAAGAAAAAAAAAGGGCT12,231,379c22Separator000000000000000000010000000
185ACGGAAAAGAAAAAAAAAGGGCTT12,231,380c24Separator000010000100000000000000000
186CACGGAAAAGAAAAAAAAAGGGCT12,231,381c24Separator000000000100000000000000000
187TCACGGAAAAGAAAAAAAAAGGGCT12,231,382c25Separator000000000000000000100000000
188AAAAAGATCTCACGGAAAAGAAAA12,231,391c24Separator000000001000000000010000000
189AAAAAAGATCTCACGGAAAAGAAA12,231,392c24Separator000000000000000001000000000
190AAAAAAAGATCTCACGGAAAAGA12,231,393c23Separator000000000001010000000000000
191AAAAAAAGATCTCACGGAAAAGAA12,231,393c24Separator010000101000000000000000000
192AAAAAAAGATCTCACGGAAAAGAAA12,231,393c25Separator001000000000000000000000000
193AGGAAAAAAAGATCTCACGGA12,231,396c21Separator000000000010000000000000000
194TAGGAAAAAAAGATCTCACG12,231,397c20Separator000000000000001000000000000
195TAGGAAAAAAAGATCTCACGG12,231,397c21Separator000001000000000000000000000
196TAGGAAAAAAAGATCTCACGGAAA12,231,397c24Separator000001000010000000000000000
197TTAGGAAAAAAAGATCTCACGG12,231,398c22Separator000100000000000000000000000
198TTAGGAAAAAAAGATCTCACGGA12,231,398c23Separator000000000001110100000000000
199TTAGGAAAAAAAGATCTCACGGAA12,231,398c24Separator100000000000100000000000000
200ATTAGGAAAAAAAGATCTCACGGA12,231,399c24Separator002100001011000000000000000
201CATTAGGAAAAAAAGATCTCACGG12,231,400c24Separator000000000000100000000000000
202GACATAACAACTTTTAGCTATAAA12,231,400w24Separator000000000000001000000000000
203ATAACAACTTTTAGCTATAAATCT72,231,403w24Separator010000000000000000100001000
204AACAACTTTTAGCTATAAATCTGG42,231,405w24Separator000001000000100000000000000
205ACAACTTTTAGCTATAAATCTGGA32,231,406w24Separator100000010010101000000000010
206GTTATGTCATTAGGAAAAAAAGA12,231,407c23Separator000000100000000000000000000
207AACTTTTAGCTATAAATCTGGACA42,231,408w24Separator000110001010020001000000000
208ACTTTTAGCTATAAATCTGGACACA42,231,409w25Separator000100000000000000000000000
209CTTTTAGCTATAAATCTGGACACA42,231,410w24Separator000000110001000010000000000
210TTTTAGCTATAAATCTGGACACAT12,231,411w24Separator000000010000000000000000000
211TTAGCTATAAATCTGGACA292,231,413w19Separator000000000010000000000000000
212AAAAGTTGTTATGTCATTAGGAAA12,231,414c24Separator000000000000100000000000000
213AGCTATAAATCTGGACACATAGT12,231,415w23Separator001000000000000000000000000
214AGCTATAAATCTGGACACATAGTT12,231,415w24Separator010000001000200000000000000
215AGCTATAAATCTGGACACATAGTTG12,231,415w25Separator001001000100000000000000000
216GCTATAAATCTGGACACATAGTTG12,231,416w24Separator011010000010001000000000000
217ATAAATCTGGACACATAGTTG12,231,419w21Separator001000000000100000000000000
218ATTTATAGCTAAAAGTTGTTATGT12,231,424c24Separator000000000100000000000000000
219ATAGTTGTCTAATTTTATAGCTAA12,231,433w24Separator010000100000000001000000000
220TGTGTCCAGATTTATAGCTAA82,231,433c21Separator100000000000001000000000000
221TGTGTCCAGATTTATAGCTAAAAG42,231,433c24Separator000000000001000000000000000
222ACTATGTGTCCAGATTTATAGCTA12,231,437c24Separator000000000000000001000000000
223AAAATTAGACAACTATGTGTCCAG12,231,448c24Separator000000000100000000000000000
224ATAAAATTAGACAACTATGTGTCC12,231,450c24Separator000000000001000000000000000
225AGCTAAAAATACTTATGTTTTGGG12,231,451w24Separator000000000010000000101000000
226AAAAATACTTATGTTTTGGGACGG22,231,455w24Separator221000001011010000211101210
227AAAAATACTTATGTTTTGGGACGGA22,231,455w25Separator000000000000000000010000000
228AAAATACTTATGTTTTGGGACGGA22,231,456w24Separator100001001021001010101100101
229AAATACTTATGTTTTGGGACGGAG22,231,457w24Separator000000000100100101010010000



Number of unique reads retrieved on this page: 213