Rice small RNA Information



Reads existing in this region (Chr 1, 2,324,352 - 2,324,816):  1 - 178 of 178      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparatorYL9522_S3_1YL9522_S3_2YL9522_S3_3YL9522_S5_1YL9522_S5_2YL9522_S5_3YL9522_S7_1YL9522_S7_2YL9522_S7_3msp1_S3_1msp1_S3_2msp1_S3_3msp1_S5_1msp1_S5_2msp1_S5_3msp1_S7_1msp1_S7_2msp1_S7_3ostdl1a_S3_1ostdl1a_S3_2ostdl1a_S3_3ostdl1a_S5_1ostdl1a_S5_2ostdl1a_S5_3ostdl1a_S7_1ostdl1a_S7_2ostdl1a_S7_3
Signature abundances normalized to (varies by library depth): Separator5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M5M
1CGGAGACTAAAATTGAGTTT12,324,355c20Separator000000000000010000000000000
2AGCGGAGACTAAAATTGAGTT12,324,357c21Separator000110001000031001000024001
3AGCGGAGACTAAAATTGAGTTTGT12,324,357c24Separator000001000000000000000010000
4AAGCGGAGACTAAAATTGAGTT12,324,358c22Separator000000000000000000000000001
5TAAGCGGAGACTAAAATTGAG12,324,359c21Separator000000000000000000000000010
6TAAGCGGAGACTAAAATTGAGTT12,324,359c23Separator000000000000000000100000000
7TAAGCGGAGACTAAAATTGAGTTT12,324,359c24Separator000000000000000000000000001
8TTAAGCGGAGACTAAAATTGA12,324,360c21Separator000000000000000000000100000
9TTAAGCGGAGACTAAAATTGAGTT12,324,360c24Separator000000000000000001000100010
10TTTAAGCGGAGACTAAAATTG12,324,361c21Separator000000010000000000000001000
11TTTTAAGCGGAGACTAAAATT12,324,362c21Separator000000000000001000000000000
12TTTTTAAGCGGAGACTAA12,324,363c18Separator000000010000000000000000000
13TTTTTAAGCGGAGACTAAAATT12,324,363c22Separator000000000000000000000001000
14TTTTTTAAGCGGAGACTAA12,324,364c19Separator000000000000000000000010000
15TTTTTTAAGCGGAGACTAAAATT12,324,364c23Separator000000000000000000000000100
16TTTTTTTAAGCGGAGACTAA12,324,365c20Separator000023011000010101000010122
17TTTTTTTAAGCGGAGACTAAA12,324,365c21Separator000110002000011000000000000
18TTTTTTTTAAGCGGAGACT12,324,366c19Separator000000000000010010000000000
19TTTTTTTTAAGCGGAGACTA12,324,366c20Separator000010010000000100000000200
20TTTTTTTTAAGCGGAGACTAA12,324,366c21Separator301374223363317111294138314026323432749334330
21TTTTTTTTAAGCGGAGACTAAAAT12,324,366c24Separator000001000000000000000001000
22TTTTTTTTAAGCGGAGACTAAAATT12,324,366c25Separator000000000000000010000000000
23CAACCTAGAAAATGTATAC12,324,369w19Separator000000000000000000000000100
24CAACCTAGAAAATGTATACAG12,324,369w21Separator000002022000111122100202120
25AAATGTATACAGTTAGGGGGCGGA12,324,378w24Separator000100000000000000000000000
26AATGTATACAGTTAGGGGGCG12,324,379w21Separator000001000000000000000000000
27ATGTATACAGTTAGGGGGCGG12,324,380w21Separator000000000000000012000001100
28ATGTATACAGTTAGGGGGCGGA12,324,380w22Separator000000000000010000000000000
29ATGTATACAGTTAGGGGGCGGACC12,324,380w24Separator000001000000002010000001000
30TGTATACAGTTAGGGGGCGGA12,324,381w21Separator0005335110108776430007103430
31GTATACAGTTAGGGGGCGGAC12,324,382w21Separator000000100000000000000000000
32TACAGTTAGGGGGCGGACCTT12,324,385w21Separator000000000000000100000000000
33ACAGTTAGGGGGCGGACCTTG12,324,386w21Separator000000000000000000000110000
34CAGTTAGGGGGCGGACCTTGG12,324,387w21Separator000000000000100000000000000
35AGTTAGGGGGCGGACCTTGGT12,324,388w21Separator000000000000100000000201000
36GTTAGGGGGCGGACCTTGGTT12,324,389w21Separator000000000000000000000001000
37TTAGGGGGCGGACCTTGGTT12,324,390w20Separator000112110000012110000101000
38TTAGGGGGCGGACCTTGGTTT12,324,390w21Separator320353120211824240453135313117742351941344134
39AGGGGGCGGACCTTGGTTT12,324,392w19Separator000000000000000000000001000
40AGGGGGCGGACCTTGGTTTGAGCC12,324,392w24Separator000000000000000000000100000
41CTAACTGTATACATTTTCTAG12,324,393c21Separator000001001000011100000100000
42CCTAACTGTATACATTTTCTA12,324,394c21Separator000000000000000000000000001
43TTTGAGCCAGGCCCCACACCAGCA12,324,408w24Separator000001000000000000000000000
44GAGCCAGGCCCCACACCAGCA12,324,411w21Separator000003102200301000000014000
45CCTGGCTCAAACCAAGGTCCG12,324,418c21Separator000000000000000000000000010
46CCCACACCAGCACACCGGATA12,324,420w21Separator000000000000000000000020000
47CCACACCAGCACACCGGATA12,324,421w20Separator000000000000000001000000000
48CTGGTGTGGGGCCTGGCTCAA12,324,429c21Separator000000000000100000000010000
49ACACCGGATAATCGGATATTG12,324,431w21Separator000000000000010000000000000
50CACCGGATAATCGGATATTGG12,324,432w21Separator000003011000112121000001100
51CCGGATAATCGGATATTGGGC12,324,434w21Separator000110100000100011000103000
52CGGATAATCGGATATTGGGCC12,324,435w21Separator0001236160005105635010751715
53TAATCGGATATTGGGCCAAAG12,324,439w21Separator000000000000010000000000000
54TCCGATTATCCGGTGTGCTGG12,324,446c21Separator000000000000000100000000000
55ATATCCGATTATCCGGTGTGC12,324,449c21Separator000000000000000000000001000
56AATATCCGATTATCCGGTGTG12,324,450c21Separator000002000100011002002010040
57TTAAAATTACATGGGTGAAAC12,324,465w21Separator000002000000000010010000000
58TTTAATTTCTCTTTGGCCCAA12,324,469c21Separator000000010000000000000000000
59ATTTTAATTTCTCTTTGGCCC12,324,471c21Separator000201000000001000000000000
60ACATGGGTGAAACTGCATGTAT12,324,473w22Separator000000000000000000000010000
61CATGGGTGAAACTGCATGT12,324,474w19Separator000010000000000000000000000
62CATGGGTGAAACTGCATGTAT12,324,474w21Separator251336660514241254577862444664333444364623894
63TGGGTGAAACTGCATGTATCT12,324,476w21Separator000100000000000000000000000
64GGGTGAAACTGCATGTATCTA12,324,477w21Separator000000000000010101000010010
65GGTGAAACTGCATGTATCTAC12,324,478w21Separator000000000000010000000000000
66TGAAACTGCATGTATCTACAC12,324,480w21Separator000000000000000000000010110
67TTCACCCATGTAATTTTAATT12,324,483c21Separator000000000000000001000000000
68TGCATGTATCTACACGAGCTT12,324,486w21Separator100210000000110000000000010
69CATGCAGTTTCACCCATGTAA12,324,491c21Separator001000000000000001000000000
70TCTACACGAGCTTTGATGCCC12,324,494w21Separator000101100001140103000130010
71CTACACGAGCTTTGATGCCCA12,324,495w21Separator000010100000110010000000002
72GTGTAGATACATGCAGTTTCA12,324,500c21Separator000000000000010000000000000
73TCGTGTAGATACATGCAGTTT12,324,502c21Separator000100200000000000000030110
74CTCGTGTAGATACATGCAGTT12,324,503c21Separator000000000000000000000010010
75CTCGTGTAGATACATGCAGTTT12,324,503c22Separator000000100000000000000000000
76GCTCGTGTAGATACATGCAG12,324,504c20Separator000001000000000000000000000
77GCTCGTGTAGATACATGCAGT12,324,504c21Separator000000000000001000000000000
78AAGCTCGTGTAGATACATGCA12,324,506c21Separator000100010000000000000000000
79TTGATGCCCAGATCAGAGGCC12,324,506w21Separator000000000000100000000000000
80TGATGCCCAGATCAGAGGCCT12,324,507w21Separator000001010000100200000000300
81TCAAAGCTCGTGTAGATACAT12,324,509c21Separator000000000000000000000000010
82CCAGATCAGAGGCCTGCGCAT12,324,513w21Separator000100111000000011000010000
83GGCATCAAAGCTCGTGTAG12,324,513c19Separator000000000000000000000010000
84GGCATCAAAGCTCGTGTAGA12,324,513c20Separator000001100000000000000021000
85GGCATCAAAGCTCGTGTAGAT12,324,513c21Separator816814217916610642474826312122247980426
86GGCATCAAAGCTCGTGTAGATA12,324,513c22Separator000200000000000000000000000
87CAGATCAGAGGCCTGCGCATT12,324,514w21Separator000003200000011023000212120
88AGATCAGAGGCCTGCGCATTC12,324,515w21Separator000000000000000000000000010
89GATCAGAGGCCTGCGCATTCC12,324,516w21Separator000001010000002110000001000
90ATCAGAGGCCTGCGCATTCCC12,324,517w21Separator000000000000000001000000000
91TCAGAGGCCTGCGCATTCCCT12,324,518w21Separator000110010000010010000002100
92CAGAGGCCTGCGCATTCCCTT12,324,519w21Separator000112221001566125000240231
93AGAGGCCTGCGCATTCCCTTGT12,324,520w22Separator000000000000100000000000000
94GCCTCTGATCTGGGCATCAAA12,324,525c21Separator000000000000000010000000000
95CAGGCCTCTGATCTGGGCATC12,324,528c21Separator000000000000100100000000021
96GCGCATTCCCTTGTATGCTGA12,324,528w21Separator000000000001021200000000000
97GCAGGCCTCTGATCTGGGCA12,324,529c20Separator010000000000000000000000000
98GCAGGCCTCTGATCTGGGCAT12,324,529c21Separator000102100000000000000000111
99AATGCGCAGGCCTCTGATCTG12,324,534c21Separator000100110000000000000000010
100CTTGTATGCTGATGAATTCTA12,324,537w21Separator000001100000300010000001022
101CAAGGGAATGCGCAGGCCTCT12,324,540c21Separator000110000000000001000000010
102ACAAGGGAATGCGCAGGCCTC12,324,541c21Separator000001000000000000000000000
103TGCTGATGAATTCTAGGATATCGG12,324,543w24Separator000000000000000100000000000
104CTGATGAATTCTAGGATATCGGCAA12,324,545w25Separator000000000000000100000000000
105AGCATACAAGGGAATGCGCAG12,324,546c21Separator000101000000010010000200100
106TGATGAATTCTAGGATATCGG12,324,546w21Separator000101000000000000000000000
107GATGAATTCTAGGATATCGGCA12,324,547w22Separator000000000000010000000000000
108GATGAATTCTAGGATATCGGCAA12,324,547w23Separator000000010000010000000000100
109ATGAATTCTAGGATATCGGCA12,324,548w21Separator000211000000300200000103005
110ATGAATTCTAGGATATCGGCAA12,324,548w22Separator000000010000000000000000000
111TGAATTCTAGGATATCGGCA12,324,549w20Separator000000000000001000000000000
112TGAATTCTAGGATATCGGCAA12,324,549w21Separator000207244182157202137386230262282185210211840295244263271287228
113TGAATTCTAGGATATCGGCAAG12,324,549w22Separator000000000000000010000000000
114TGAATTCTAGGATATCGGCAAGG12,324,549w23Separator000000100000000000000000000
115TTCTAGGATATCGGCAAGGGA12,324,553w21Separator000000000000000000000000010
116TCTAGGATATCGGCAAGGGAA12,324,554w21Separator000000000000000000101000000
117GAATTCATCAGCATACAAGGG12,324,555c21Separator000010011000230201010220121
118TAGGATATCGGCAAGGGAAAA12,324,556w21Separator000111102000110100000101040
119AGGATATCGGCAAGGGAAAAC12,324,557w21Separator000011000000100000000000000
120GGATATCGGCAAGGGAAAACA12,324,558w21Separator2100717100011783301001045021
121TATCGGCAAGGGAAAACATTA12,324,561w21Separator000000000000000010000000111
122TTTTCCCTTGCCGATATCCTA12,324,576c21Separator000002012000300325000140102
123TTATTGTTTTCTTAATTTTTA12,324,579w21Separator000010012000001003000011101
124AAAACAATAATGTTTTCCCTT12,324,588c21Separator000000000000000000000010000
125GTCTTAAAATGAATAGGTCCT12,324,600w21Separator000011110000000000000000000
126GTCTTAAAATGAATAGGTCCTG12,324,600w22Separator000000001000000000000000000
127TCTTAAAATGAATAGGTCCTG12,324,601w21Separator000000100000000000000000000
128GACCTATTCATTTTAAGACTA12,324,618c21Separator000000100000100001000000100
129TGAGATCTCCCGCAGACATGCA12,324,620w22Separator000000000000001100000000000
130GAGATCTCCCGCAGACATGCA12,324,621w21Separator000202010000100100000013100
131AGATCTCCCGCAGACATGCA12,324,622w20Separator000001000000000000000000000
132GGAGATCTCAGGACCTATTC12,324,629c20Separator000000000000100000000000000
133GGGAGATCTCAGGACCTAT12,324,630c19Separator000000000000000010000000000
134GGGAGATCTCAGGACCTATT12,324,630c20Separator000001002000021101000010101
135GGGAGATCTCAGGACCTATTC12,324,630c21Separator100731332502021291411491029362311612
136GGGAGATCTCAGGACCTATTCA12,324,630c22Separator000000000000001000000000000
137GGGAGATCTCAGGACCTATTCATT12,324,630c24Separator000010100000001000000000001
138AGACATGCACTGATGTTCCAA12,324,633w21Separator000013202001657616000172210
139TCTGCGGGAGATCTCAGG12,324,635c18Separator000000000000000000000100000
140TCTGCGGGAGATCTCAGGACC12,324,635c21Separator000001000000000000000000001
141GTCTGCGGGAGATCTCAGGAC12,324,636c21Separator000001000000000000000000000
142TGTCTGCGGGAGATCTCAGGA12,324,637c21Separator001121000000100001000201000
143CATGTCTGCGGGAGATCTCAG12,324,639c21Separator000100000000000000000000000
144TGCATGTCTGCGGGAGATCTC12,324,641c21Separator000000000000000000000000001
145CTGATGTTCCAAGTTCCCG12,324,642w19Separator000000000000100000000000000
146CTGATGTTCCAAGTTCCCGTC12,324,642w21Separator000223332001339103000112121
147TGATGTTCCAAGTTCCCGTC12,324,643w20Separator000000000000000000000000100
148CAAGTTCCCGTCTAGCATTGC12,324,651w21Separator000000000000000000000000100
149GGAACATCAGTGCATGTCTGC12,324,651c21Separator000000000000000000000001000
150GTTCCCGTCTAGCATTGCCCA12,324,654w21Separator000000000000010000000000000
151GGAACTTGGAACATCAGTGCA12,324,658c21Separator000000001000000000000000000
152CGGGAACTTGGAACATCAGTG12,324,660c21Separator000001001000000000000012000
153CTAGCATTGCCCAGTTGGCCC12,324,662w21Separator000000000000010000000000000
154TAGCATTGCCCAGTTGGCCCA12,324,663w21Separator32127151510219000143326161615210222424131912
155ATGCTAGACGGGAACTTGGAA12,324,668c21Separator000001000000000100000000000
156GCAATGCTAGACGGGAACTT12,324,671c20Separator000000000000100000000000000
157GCAATGCTAGACGGGAACTTG12,324,671c21Separator000001000000000000000000000
158GGCAATGCTAGACGGGAACT12,324,672c20Separator000000000000020000000001000
159GGCAATGCTAGACGGGAACTT12,324,672c21Separator00011551500072389650006723112
160GGCAATGCTAGACGGGAACTTGGA12,324,672c24Separator000000000010000000000000000
161GGGCAATGCTAGACGGGAACTT12,324,673c22Separator000000000001000000000000000
162TGGGCAATGCTAGACGGGAAC12,324,674c21Separator000000000000000000000000010
163CTGGGCAATGCTAGACGGGAA12,324,675c21Separator000000000000000000000000010
164ACTGGGCAATGCTAGACGGGA12,324,676c21Separator000001000000100000000000000
165AACTGGGCAATGCTAGACGGG12,324,677c21Separator000112010000211101000000010
166AACTGGGCAATGCTAGACGGGA12,324,677c22Separator000000010000000000000000000
167CAACTGGGCAATGCTAGACGG12,324,678c21Separator000100000000000000000011100
168CCAACTGGGCAATGCTAGACG12,324,679c21Separator000100000000000010000303010
169GCCAACTGGGCAATGCTAGAC12,324,680c21Separator000001000000100000000000000
170ATCTGAAATTCCCCGATGA12,324,684w19Separator000100000000000000000000000
171CATCGGGGAATTTCAGATTGG12,324,701c21Separator000001100000000000000010000
172TCATCGGGGAATTTCAGA12,324,702c18Separator000010000000000000000000000
173TCATCGGGGAATTTCAGAT12,324,702c19Separator000000000000000000000001001
174TCATCGGGGAATTTCAGATTG12,324,702c21Separator0001312851211001101320101082221561110119
175TCATCGGGGAATTTCAGATTGG12,324,702c22Separator000000000000100000000000000
176TCATCGGGGAATTTCAGATTGGGC12,324,702c24Separator000000000000000100000000000
177TAGCCTGTGACCATGCGTGCA12,324,755c21Separator000000001000000000000000000
178TAGCTTGCATAATCTGGGGTT12,324,808w21Separator000000000000000000000001000



Number of unique reads retrieved on this page: 178