Rice small RNA Information



Reads existing in this region (Chr 1, 20,086,207 - 20,086,629):  1 - 141 of 141      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparator1d_LT_s6_rep11d_LT_s6_rep21d_LT_s6_rep31d_LT_s8_rep11d_LT_s8_rep21d_LT_s8_rep31d_LT_s9_rep11d_LT_s9_rep21d_LT_s9_rep31d_NT_s6_rep11d_NT_s6_rep21d_NT_s6_rep31d_NT_s8_rep11d_NT_s8_rep21d_NT_s8_rep31d_NT_s9_rep11d_NT_s9_rep21d_NT_s9_rep3FLAG_1D_S6_1_inFLAG_1D_S6_2_inFLAG_1D_S6_3_inFLAG_1D_S6_1_RIPFLAG_1D_S6_2_RIPFLAG_1D_S6_3_RIPFLAG_1D_S8_1_inFLAG_1D_S8_2_inFLAG_1D_S8_3_inFLAG_1D_S8_1_RIPFLAG_1D_S8_2_RIPFLAG_1D_S8_3_RIPFLAG_1D_S9_1_inFLAG_1D_S9_2_inFLAG_1D_S9_3_inFLAG_1D_S9_1_RIPFLAG_1D_S9_2_RIPFLAG_1D_S9_3_RIPWT_LT_s6_rep1WT_LT_s6_rep2WT_LT_s6_rep3WT_LT_s8_rep1WT_LT_s8_rep2WT_LT_s8_rep3WT_LT_s9_rep1WT_LT_s9_rep2WT_LT_s9_rep3WT_NT_s6_rep1WT_NT_s6_rep2WT_NT_s6_rep3WT_NT_s8_rep1WT_NT_s8_rep2WT_NT_s8_rep3WT_NT_s9_rep1WT_NT_s9_rep2WT_NT_s9_rep3
Signature abundances normalized to (varies by library depth): Separator3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M
1AGCGAAGCGTACTTTCGATCCCCC120,086,210w24Separator000000000000000000000000000000000000002000010000000000
2GCGAAGCGTACTTTCGATCCCCCC120,086,211w24Separator000000000000000000000000000000000000000000000001000000
3AAGCGTACTTTCGATCCCCCC120,086,214w21Separator000000000000000000000000000000000000010000000000000000
4ACTTTCGATCCCCCCCTCACTCGG120,086,220w24Separator002000101010010200000000000001000000100001100000020000
5AAGTACGCTTCGCTTCGGCGA120,086,223c21Separator000000000100000000000000000000000000000000000000000000
6TTCGATCCCCCCCTCACTC120,086,223w19Separator000000000000000000000103110100000100000000000000000000
7TTCGATCCCCCCCTCACTCG120,086,223w20Separator000000000000000000000000000300000000000200000000000300
8TTCGATCCCCCCCTCACTCGG120,086,223w21Separator141151167200132110161154832371558838656712499951013961010103110241889273454656555066542966324136706028
9TTCGATCCCCCCCTCACTCGGA120,086,223w22Separator000301000100011000001000000100000000100110010001000040
10TTCGATCCCCCCCTCACTCGGATG120,086,223w24Separator100010000010000000000000000000000000000000000000000000
11TTCGATCCCCCCCTCACTCGGATGA120,086,223w25Separator000010000000000000000000000000000000000000000000000000
12TCGATCCCCCCCTCACTCGGA120,086,224w21Separator315323225342212013000000000000000000204004024601010300
13GATCCCCCCCTCACTCGG120,086,226w18Separator000000000000000001000000000000000000000000000100000000
14CCTCACTCGGATGAGAATAGT220,086,234w21Separator000000000000000000200000100000000000000000000000000000
15CTCACTCGGATGAGAATAGTGG220,086,235w22Separator000000000000000000100000000000000000000000000000000000
16CTCACTCGGATGAGAATAGTGGT120,086,235w23Separator000000000000000000010000000000000000000000000000000000
17TCGGATGAGAATAGTGGTGGA120,086,240w21Separator001000000000000000000000000000000000000000000000000000
18ATGAGAATAGTGGTGGAT120,086,244w18Separator000000000000000000000000000001000020000000000000000000
19ATGAGAATAGTGGTGGATTC120,086,244w20Separator000000000000000000000022010110000040000000000000000000
20ATGAGAATAGTGGTGGATTCA120,086,244w21Separator100016000000001000110003001000000000001000000000000400
21ATGAGAATAGTGGTGGATTCAC120,086,244w22Separator000000000000000000000000000000000000001000000000000000
22TGAGAATAGTGGTGGATT120,086,245w18Separator000000000000000000000000000000000001000000000000000000
23TGAGAATAGTGGTGGATTCAC120,086,245w21Separator100000000000000000010000000000000000000000000000000000
24TTCTCATCCGAGTGAGGGGGG120,086,250c21Separator000000000000000000000000000010000000000000000000000000
25ATCCACCACTATTCTCATCCGAGT120,086,261c24Separator000000000000000001000000000000000000000000000000000000
26AATCCACCACTATTCTCATCC120,086,262c21Separator010000100100000000110100000000000000000000000000000000
27CCGCCCGGGCAGCACGGGCA120,086,265w20Separator000000000000000000000010000000000000000000000000000000
28TGTGAACCCTGCACAGCTGCC120,086,301c21Separator000000000100000000000000000000000000000000000000000000
29TCGCTGTGAACCCTGCAC120,086,305c18Separator000000000000000000000000000000000000000000010000000000
30TCGCTGTGAACCCTGCACA120,086,305c19Separator000001000000000000000000000000000000000000000000000000
31TAAACCTTGGATATTGACGCT120,086,306w21Separator000000000000000000010000000000000000000000000000000000
32AAACCTTGGATATTGACGCT120,086,307w20Separator000000000000001020313012111000010000000000000010000000
33AAACCTTGGATATTGACGCTA120,086,307w21Separator012041540642011030205020422110101000200220200000301140
34TATCGCTGTGAACCCTGCACA120,086,307c21Separator001000000000000000011000000000100000000000000000000000
35AACCTTGGATATTGACGCT120,086,308w19Separator000000000000000000100000000000000000000000000000000000
36AACCTTGGATATTGACGCTAA120,086,308w21Separator000000000000000000100000000000000000000000000000000000
37TTATCGCTGTGAACCCTGCAC120,086,308c21Separator100000000010000000000000000000000000000001000000000000
38TTATCGCTGTGAACCCTGCACA120,086,308c22Separator000000000000000000000000000000000200000000000000000000
39TTTATCGCTGTGAACCCTGCAC120,086,309c22Separator000000000000100000000000000000000000000000000000000100
40ATATTGACGCTAATTCTTCCC120,086,316w21Separator000000000000000000000011000000000000000000000000000000
41TCCAAGGTTTATCGCTGTGAACCC120,086,316c24Separator000000000000000000000000000000000000000000001000000000
42AGCGTCAATATCCAAGGT120,086,326c18Separator000000000000000000100000000000000000000000000000000000
43ATCTATTTTAGGGAAGAATT120,086,346c20Separator000000000000000000100000100000000000000000000000000000
44ATCTATTTTAGGGAAGAATTA120,086,346c21Separator000000000000000000000000001000000000000000000000000000
45TGCCCGGTCAGGCGGTAACT120,086,367c20Separator000000000000000000101001100101000000000000000000000000
46TGCCCGGTCAGGCGGTAACTA120,086,367c21Separator000001000000000000111000001010000000000000000000100000
47TTGCCCGGTCAGGCGGTAACT120,086,368c21Separator120010000201000011001000001020000200000010000000102060
48TTGCCCGGTCAGGCGGTAACTA120,086,368c22Separator000000000000000000000010000000000000000000000000000000
49ATATGCTTGTCAAAGGTTGGT120,086,370w21Separator000000000300000001011200000018000100000000000000000000
50ATATGCTTGTCAAAGGTTGGTG120,086,370w22Separator200000000000000000000000000000000020000000000000000000
51TATGCTTGTCAAAGGTTGGTG120,086,371w21Separator332300200010000002100001000100000000410112001101000002
52TGCTTGTCAAAGGTTGGTGTCCTG120,086,373w24Separator000000000000000000001000000000000000000000000000000000
53TCAAAGGTTGGTGTCCTGCAA120,086,379w21Separator000000000010000000000000000000000000000000000000000000
54CAACCTTTGACAAGCATA120,086,388c18Separator000000000011000001000000000000000000000000000000000000
55CAACCTTTGACAAGCATAT120,086,388c19Separator000010140001100031000000100000000000000000000000000000
56CAACCTTTGACAAGCATATG120,086,388c20Separator0106224622126211023000000000000000000000011000101110000
57CAACCTTTGACAAGCATATGT120,086,388c21Separator112340202231201021000000000000000000001002001112002000
58CCAACCTTTGACAAGCATATG120,086,389c21Separator000010000000000000000000000000000000000000000000000000
59GTCCTGCAAACGGCTACCCTG120,086,391w21Separator000000000000000000001000001000000000000000000000000000
60ACACCAACCTTTGACAAGCATATG120,086,392c24Separator000000001000000000000000000000000000000000000000000000
61TCCTGCAAACGGCTACCCTG120,086,392w20Separator000000000000000010000000000000000000000000000000000000
62TCCTGCAAACGGCTACCCTGC120,086,392w21Separator211010100110020000000200000110000000200101000001000060
63AGGACACCAACCTTTGACAAGC120,086,395c22Separator000000000000000000000000000000000000000000000000100000
64CAAACGGCTACCCTGCAGGC220,086,397w20Separator000000000000000000000000000000000001000000000000000000
65AACGGCTACCCTGCAGGC220,086,399w18Separator000000020000000000000000000000000000000000000000000000
66GGGTAGCCGTTTGCAGGACAC120,086,409c21Separator000000000000000000010000001000000000000000000000000000
67CAGGCCGAAAAACCTATCGCA120,086,412w21Separator000000000000000000100000000000000000000000000000000000
68TTTTCGGCCTGCAGGGTAGCC120,086,422c21Separator000000000000000000000000000100000000000000000000000000
69TTTTTCGGCCTGCAGGGTAGC120,086,423c21Separator000000000000000000000101000000001000000000000000000000
70GTTTTTCGGCCTGCAGGG120,086,424c18Separator000000000000000000000000000000001000000000000000000000
71GGTTTTTCGGCCTGCAGGG120,086,425c19Separator000000000000000000000000000000001000000000000000000000
72AGGTTTTTCGGCCTGCAGGGT120,086,426c21Separator000000000000000000000000010000000000000000000000000000
73TATCGCACGATCGATCGCCCC120,086,426w21Separator000000000000000000000000000000000000000000010000000000
74ATCGCACGATCGATCGCCCCAAGT120,086,427w24Separator000000100000000000000000000000000000000000000000000000
75CGATAGGTTTTTCGGCCT120,086,430c18Separator000000000000000010000000000000000000000020000000000000
76CGATAGGTTTTTCGGCCTGC120,086,430c20Separator000000000000000000000000000000000000000000000001000000
77CGATAGGTTTTTCGGCCTGCA120,086,430c21Separator000000000000000000000000000000000000000002000000000000
78GCACGATCGATCGCCCCAAGTGAT120,086,430w24Separator001003000000000010000000100000000000100010010000000000
79CACGATCGATCGCCCCAAGTGATC120,086,431w24Separator000000000000000000000000001000000000000000000000000000
80GCGATAGGTTTTTCGGCCTGC120,086,431c21Separator000000000000000000001000000000000000000000000000000000
81CGATCGATCGCCCCAAGT120,086,433w18Separator000000521000000222000000000200000000000000000000000000
82CGATCGATCGCCCCAAGTG120,086,433w19Separator00000012130000010021000000000000000000000100020000100000
83CGATCGATCGCCCCAAGTGA120,086,433w20Separator0103031667511110281311100000000000100020001231121514000702000
84CGATCGATCGCCCCAAGTGAT120,086,433w21Separator142127148203202103831351381951568976886619589016526822345433307046706749841105542395062562419527100
85CGATCGATCGCCCCAAGTGATC120,086,433w22Separator010000000000000000010000000000000000000000000000000000
86GATCGATCGCCCCAAGTGA120,086,434w19Separator000000100000000000000000000000000000000000000000000000
87GATCGATCGCCCCAAGTGAT120,086,434w20Separator012010000201020000000000000000000000000000000000000000
88ATCGATCGTGCGATAGGTTTTTCG120,086,440c24Separator000000000000000000010000000000000000000000000000000000
89CGATCGATCGTGCGATAGGT120,086,442c20Separator000000000000001000000000000000000000000000000000000000
90CCAAGTGATCAGTTCCCCTCT120,086,445w21Separator000001000001000000000000000000000000000200000000000000
91GGGCGATCGATCGTGCGATAG120,086,445c21Separator000000000000000000100000000000000000000000000000000000
92GGGCGATCGATCGTGCGATAGGT120,086,445c23Separator000000000000000000000000001000000000000000000000000000
93CAAGTGATCAGTTCCCCTCTC120,086,446w21Separator000000000000000000000000000000000000000100000000000000
94GGGGCGATCGATCGTGCGATAGG120,086,446c23Separator000000000000000000000000000000001000000000000000000000
95CTTGGGGCGATCGATCGTGCG120,086,449c21Separator000000000000000000000000000001000000000000000000000000
96CACTTGGGGCGATCGATC120,086,451c18Separator000000000000000000010000000000000000000000000000000000
97CACTTGGGGCGATCGATCGTG120,086,451c21Separator000000000000000000111000000000000100000001000000000000
98TCACTTGGGGCGATCGATCGT120,086,452c21Separator000000144012010010110510000001001000001001000000100000
99TCACTTGGGGCGATCGATCGTG120,086,452c22Separator000000000000000000000000000000000000100000000000000000
100CAGTTCCCCTCTCCCATACG120,086,454w20Separator000000000000000000000000000000000000000000001000000000
101CAGTTCCCCTCTCCCATACGG120,086,454w21Separator211715282116741820197610133511100010200000000000105731101103333100
102GATCACTTGGGGCGATCGATCGTG120,086,454c24Separator000000000000000010000000010000000000000000000000000000
103AACTGATCACTTGGGGCGA120,086,458c19Separator000000000000000000100000000000000000000000000000000000
104AGAGGGGAACTGATCACTTGGGGC120,086,465c24Separator000000000000000000000001000000000000000000000000000000
105TATGGGAGAGGGGAACTGATC120,086,471c21Separator000000000010000000000000000000000000000000000000000000
106GTATGGGAGAGGGGAACT120,086,472c18Separator000000000000000000001000000000000000000000000000000000
107GTATGGGAGAGGGGAACTGA120,086,472c20Separator000000000000000000001000000000000000000000000000000000
108GTATGGGAGAGGGGAACTGAT120,086,472c21Separator000000000000000000010001000000000000000000000000000000
109CGTATGGGAGAGGGGAACTG120,086,473c20Separator000000000000000000000000010000000000000000000000000000
110TTTTCCTTTTTGTCACCGCTT120,086,475w21Separator102001040000000000010000000000100000000010000000000000
111TTTCCTTTTTGTCACCGCTTT120,086,476w21Separator000000000000000000000100000000000000000000000000000000
112AGCGGTGACAAAAAGGAAAAC120,086,494c21Separator000000000000000000100000000000000000000000000000000000
113AAAAGTAAAGCGGTGACAAAAAGG120,086,502c24Separator000000000000000000000000000000000000000000000001000100
114TTATACATCTGAAGTTTGTACACCT120,086,517w25Separator000000000000000000100000000000000000000000000000000000
115ACTTCAGATGTATAAACTTACT120,086,531c22Separator000000000000000000010000000000000000000000000000000000
116ACCTAAAGTTTATATATCT1220,086,538w19Separator000000000001000000000000000000000000000000000000000000
117CCTAAAGTTTATATATCTAAAGTT420,086,539w24Separator000000000000000000010000000000000000000000000000000000
118ACTTTAGGTGTACAAACTT1520,086,546c19Separator000000000000000000000000010000000000000000000000000000
119ATAAACTTTAGGTGTACAAACT1220,086,550c22Separator000000000000000000000000001000000000000000000000000000
120TATAAACTTTAGGTGTACAAACT1120,086,551c23Separator000000000000000000000000100000000000000000000000000000
121TAGATATATAAACTTTAGGTG220,086,557c21Separator000000000000000000000000000000000000000000000001000000
122GTGTATAAACTTTAGATA4120,086,569c18Separator000000000000000000000000000000100000000000000000000000
123GGTGTATAAACTTTAGAT84920,086,570c18Separator000000000000000000000001000000000000000000000000000000
124AGGTGTATAAACTTTAGA84720,086,571c18Separator000000000000000000000000100000010000000000000000000000
125TAGGTGTATAAACTTTAGA79720,086,572c19Separator000000000000000000000000000000100000000000000000000000
126TAGGTGTATAAACTTTAGAT78420,086,572c20Separator000000000000000000100000100000000000000000000000000000
127TTAGGTGTATAAACTTTAG82920,086,573c19Separator000000000000000000000100000000000000000000000000000000
128TTAGGTGTATAAACTTTAGAT76920,086,573c21Separator000000000000000000000000000001000000000000000000000000
129TTAGGTGTATAAACTTTAGATA3420,086,573c22Separator000000000000000000100000000000000000000000000000000000
130TTTAGGTGTATAAACTTT93420,086,574c18Separator000000000000000000100000000000100000000000000000000000
131TTTAGGTGTATAAACTTTAG81920,086,574c20Separator000000000000000000003000000000000000000000000000000000
132TTTAGGTGTATAAACTTTAGA77120,086,574c21Separator000000000000000000000000000000100000000000000000000000
133TTTAGGTGTATAAACTTTAGAT75920,086,574c22Separator000000000000000000000000100000000000000000000000000000
134TTTAGGTGTATAAACTTTAGATA3420,086,574c23Separator000000000000000000000000100000000000000000000000000000
135GTTTAGGTGTATAAACTTT1020,086,575c19Separator000000000000000000000000100000000000000000000000000000
136TTTAGGTGTATAAATTTT4120,086,604c18Separator000000000000000000001000000000010000000000000000000000
137ACTTTAGGTGTATAAATTTT4020,086,606c20Separator000000000000000000000000000000010000000000000000000000
138TTTCACGGTATAAACTTTAGG120,086,619c21Separator000000000000000000001000000000000000000000000000000000
139CTTTCACGGTATAAACTTTAG120,086,620c21Separator000000000010000000000000000000000000000000000000000000
140ACTTTCACGGTATAAACTTT120,086,621c20Separator000000000000000000100000000000000000000000000000000000
141AACTTTCACGGTATAAACTTTAGG120,086,622c24Separator000000000000000010000000000000000000000000000000000000



Number of unique reads retrieved on this page: 115