Rice small RNA Information



Reads existing in this region (Chr 1, 34,278,492 - 34,278,956):  1 - 127 of 127      


Page 1 of 1:    1    
#SequenceHitsCoordinateStrandLenSeparator1d_LT_s6_rep11d_LT_s6_rep21d_LT_s6_rep31d_LT_s8_rep11d_LT_s8_rep21d_LT_s8_rep31d_LT_s9_rep11d_LT_s9_rep21d_LT_s9_rep31d_NT_s6_rep11d_NT_s6_rep21d_NT_s6_rep31d_NT_s8_rep11d_NT_s8_rep21d_NT_s8_rep31d_NT_s9_rep11d_NT_s9_rep21d_NT_s9_rep3FLAG_1D_S6_1_inFLAG_1D_S6_2_inFLAG_1D_S6_3_inFLAG_1D_S6_1_RIPFLAG_1D_S6_2_RIPFLAG_1D_S6_3_RIPFLAG_1D_S8_1_inFLAG_1D_S8_2_inFLAG_1D_S8_3_inFLAG_1D_S8_1_RIPFLAG_1D_S8_2_RIPFLAG_1D_S8_3_RIPFLAG_1D_S9_1_inFLAG_1D_S9_2_inFLAG_1D_S9_3_inFLAG_1D_S9_1_RIPFLAG_1D_S9_2_RIPFLAG_1D_S9_3_RIPWT_LT_s6_rep1WT_LT_s6_rep2WT_LT_s6_rep3WT_LT_s8_rep1WT_LT_s8_rep2WT_LT_s8_rep3WT_LT_s9_rep1WT_LT_s9_rep2WT_LT_s9_rep3WT_NT_s6_rep1WT_NT_s6_rep2WT_NT_s6_rep3WT_NT_s8_rep1WT_NT_s8_rep2WT_NT_s8_rep3WT_NT_s9_rep1WT_NT_s9_rep2WT_NT_s9_rep3
Signature abundances normalized to (varies by library depth): Separator3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M3M
1GTTGCTCAGGACTCAGCCACTCAG134,278,495c24Separator000001000000000000000000000000000000000000000000000000
2CCGCCAAGATTCCCGGTGT134,278,610c19Separator000000000000000000010000000000000000000000000000000000
3CGCTCTACGATCCTCTGA134,278,613w18Separator0000021212701032132115010000001101112123000000020100101000
4CGCTCTACGATCCTCTGAT134,278,613w19Separator010120132331404059281937011311102001111101000022103010202020
5CGCTCTACGATCCTCTGATG134,278,613w20Separator010013920273652517159161941142213115204214146000020183100211000
6CGCTCTACGATCCTCTGATGT134,278,613w21Separator23429030474039340929549257328651935820926114712118726531253457314698892481963767412518613210514620425688120791351441721048556108145139979778181917
7GCTCTACGATCCTCTGAT134,278,614w18Separator000000000000000000000000000000000000000000010000000000
8GCTCTACGATCCTCTGATG134,278,614w19Separator000000100000000000000000000000000000000000000000000000
9GCTCTACGATCCTCTGATGT134,278,614w20Separator001901102240200000002000101010000000000011030100000600
10CTCTACGATCCTCTGATGT134,278,615w19Separator000000000000001000000000100000000000010000000000000000
11TCTACGATCCTCTGATGT134,278,616w18Separator001000000000000000000001000000100000000000000000000000
12CGATCCTCTGATGTCTATCATCGA134,278,620w24Separator000000000000000000000000000000001000000000000000000000
13TCAGAGGATCGTAGAGCGTT134,278,630c20Separator000001000000000000100000000000001000000000000000000000
14TCAGAGGATCGTAGAGCGTTC134,278,630c21Separator000000000000000000000001000000000000000000000000000000
15ATCAGAGGATCGTAGAGC134,278,631c18Separator000000000000000000011000001000000000000000000000000000
16ATCAGAGGATCGTAGAGCGT134,278,631c20Separator000000000000000000011000000001000000000000000000000000
17ATCAGAGGATCGTAGAGCGTT134,278,631c21Separator00000322231002202112352050107791075263201400023132102002100
18ATCAGAGGATCGTAGAGCGTTC134,278,631c22Separator000000000010000000001000000000000000000000000000000000
19CTATCATCGATCTTGCAC134,278,634w18Separator000000100000000010000000001000100001001010010000000000
20CTATCATCGATCTTGCACC134,278,634w19Separator000000164000000320000100002000000140000100054200000000
21CTATCATCGATCTTGCACCG134,278,634w20Separator011300240000201000000000000000000000000200235000000000
22CTATCATCGATCTTGCACCGC134,278,634w21Separator14131916361012313152221191518811511289542231210011620512101717151726161519462020131567
23CTATCATCGATCTTGCACCGCA134,278,634w22Separator000000000000000000000000000000000000000000000000010000
24TATCATCGATCTTGCACCGC134,278,635w20Separator000000000000000000000000000000000000000010000000000020
25TATCATCGATCTTGCACCGCA134,278,635w21Separator000010000001002000000000000000000000000001001300000100
26TATCATCGATCTTGCACCGCAA134,278,635w22Separator100000000000000000000000000000000000000000000000000000
27ATCATCGATCTTGCACCGCAA134,278,636w21Separator000000000010000000000000000000000000000000000000000000
28ATAGACATCAGAGGATCGTAGAGC134,278,637c24Separator010000000000000000000000000000000000000000000000000000
29TCGATCTTGCACCGCAATGCT134,278,640w21Separator000000000000000000000000000000000000000000000100000000
30TGCACCGCAATGCTCGTCTGC134,278,647w21Separator000300000000000000000000000000000000000000000000000000
31GGTGCAAGATCGATGATAG134,278,652c19Separator000000000000000000100000010000000000000000000000000000
32GGTGCAAGATCGATGATAGAC134,278,652c21Separator000000000100000000132001000000100000000000000000000000
33AATGCTCGTCTGCTGCGTG134,278,655w19Separator010000120000000000001010000000000000000000100000000000
34AATGCTCGTCTGCTGCGTGAT134,278,655w21Separator0171606764512105321431004111000100203100029131163603027
35AATGCTCGTCTGCTGCGTGATG134,278,655w22Separator016301160000112001000000000000000000000001410000000000
36AATGCTCGTCTGCTGCGTGATGAT134,278,655w24Separator000000000000000000000002000000000000000000000000000000
37TGCGGTGCAAGATCGATGATAGAC134,278,655c24Separator000000000000000000010000000000000000000000000000000000
38ATTGCGGTGCAAGATCGATGAT134,278,657c22Separator000000000000010000000000000000000000000000000000000000
39CATTGCGGTGCAAGATCGATGATA134,278,658c24Separator000000000000000000100000000000000000000000000000000000
40TCGTCTGCTGCGTGATGATCGGTG134,278,660w24Separator000000000000000000000000000000000000100000000000000000
41CACGCAGCAGACGAGCATTG134,278,673c20Separator000000000000000000000000000000000000000000000000001000
42CACGCAGCAGACGAGCATTGC134,278,673c21Separator000000000000000010001000000000000000000000000000000000
43TCACGCAGCAGACGAGCATTG134,278,674c21Separator000000000010000000000000000000000000000000000000000000
44TCACGCAGCAGACGAGCATTGC134,278,674c22Separator000000000100000000000000000000000000000000000000000000
45GATCGGTGCCGGCTGCGTGC134,278,676w20Separator000000000000000000100000010000000000000000000000000000
46GATCGGTGCCGGCTGCGTGCT134,278,676w21Separator012300000000000000151000032000220000000000000000002000
47TCGGTGCCGGCTGCGTGCT134,278,678w19Separator000000000100000000000000000000000000000000000000000000
48CGGTGCCGGCTGCGTGCTGTG134,278,679w21Separator000000000000000000010000000000000000000000000000000000
49CACGCAGCCGGCACCGATCAT134,278,694c21Separator000000000000000000011000011000000000000000100000000000
50TGATCACCCTGTCACACAC134,278,715c19Separator000000000000000000000100000000000000100000000001000000
51TGATCACCCTGTCACACACAG134,278,715c21Separator467351421222000064000000000000000000201321472821218160
52CCCCCTCCGTGTGTGACA134,278,718w18Separator000000000000000000000020000000000000000000000000000000
53CCCCCTCCGTGTGTGACAG134,278,718w19Separator000000000000000000011000001000000000000000000000000000
54CCCCCTCCGTGTGTGACAGAC134,278,718w21Separator010000302013001210238000224010322300000000000000000000
55CCCTCCGTGTGTGACAGAC134,278,720w19Separator000000000000000000100000000000000000000000000000000000
56CCTCCGTGTGTGACAGAC134,278,721w18Separator000000000000000000000000100000000000000000000000000000
57CCTCCGTGTGTGACAGACAG134,278,721w20Separator000000000000000000001000000000000000000000000000000000
58CCTCCGTGTGTGACAGACAGA134,278,721w21Separator000000000000000000100000000000000000000000000000000000
59TCACACACGGAGGGGGCC134,278,733c18Separator000000000000000000001000000000010000000000000000000000
60CTGTCACACACGGAGGGG134,278,736c18Separator000000000000000000001000000000000100000000000000000000
61CTGTCACACACGGAGGGGGC134,278,736c20Separator000000000000000000000000001000000000000000000000000000
62CTGTCACACACGGAGGGGGCC134,278,736c21Separator010341002300010000144011011063032021011002000002000000
63TCTGTCACACACGGAGGGGGC134,278,737c21Separator000000000000000000000000000000010000000000000000000000
64AGATCAACACAGCGCCCATGA134,278,739w21Separator000000000000000000000000010000000100000000000000000000
65TTGATCTGTCTGTCACACACG134,278,745c21Separator000000000000000000000000000000001000000000000100000000
66CTGTGTTGATCTGTCTGTCAC134,278,750c21Separator000000000000000000000000000000000000000001000000000000
67GCGCTGTGTTGATCTGTCTGTCAC134,278,753c24Separator000010000000000000000000000000000000000000000000000000
68TGGGCGCTGTGTTGATCTGTC134,278,756c21Separator000000000000011020000000000000000000000000100000000000
69ATGGGCGCTGTGTTGATC134,278,757c18Separator000020002001000000111000000011011400000000000000000000
70ATGGGCGCTGTGTTGATCT134,278,757c19Separator000000000000000000112000104000011000000000000000000000
71ATGGGCGCTGTGTTGATCTG134,278,757c20Separator000300000000000000010000000000000000000010000000000000
72ATGGGCGCTGTGTTGATCTGT134,278,757c21Separator18163559453767675478373030352627313149685123312315323817282225201910723191417381937353017182518321719314117
73ATGGGCGCTGTGTTGATCTGTC134,278,757c22Separator4023413240000101050101000100120002100000001022000000000
74ATGGGCGCTGTGTTGATCTGTCT134,278,757c23Separator000000100000000000000000000000000000000000000200000000
75CATGGGCGCTGTGTTGATCTG134,278,758c21Separator000000001000000000000000000001000000000000000200000000
76TCATGGGCGCTGTGTTGATCT134,278,759c21Separator000000000000000200000000000000000000000100000000000000
77AAGTACCGAGTACGTACGTGT134,278,761w21Separator100000000000000000000000000000000000000000000000000000
78CTTCTCATGGGCGCTGTGTTG134,278,763c21Separator000000000000000000000000000000000000000000000000001000
79TACCGAGTACGTACGTGTGCA134,278,764w21Separator000002000101000000000000000000000000000000000002000000
80TCGGTACTTCTCATGGGCGCT134,278,769c21Separator000000000000000000000000000000000000000000000000003000
81CGTACGTACTCGGTACTTCT134,278,778c20Separator000000020000000000000000000000000000000000000000000000
82CGTACGTACTCGGTACTTCTC134,278,778c21Separator000000001000000000101000000000000020010000000001000000
83TGCACCCTCCGTACGTGC134,278,781w18Separator000000100000000000000000000000000000000000000000000000
84TGCACCCTCCGTACGTGCGTG134,278,781w21Separator000000101321000000000000000000000000000001000201002000
85TGCACACGTACGTACTCGGTA134,278,784c21Separator000000000000000000000000000000000000000000000000010000
86TACGTGCGTGCTTCTGTTG134,278,792w19Separator000000000000000000000010000000001000000000000000000000
87TACGTGCGTGCTTCTGTTGAG134,278,792w21Separator000000000000000000000000000000000000000000000000100000
88CTTCTGTTGAGATCCACC134,278,802w18Separator000000000000000000001000000000000000000000000000010000
89CTTCTGTTGAGATCCACCC134,278,802w19Separator000000000000000000213000332010001000000000000000000000
90CTTCTGTTGAGATCCACCCA134,278,802w20Separator000000000000000000000000000001000000000000000000000000
91CTTCTGTTGAGATCCACCCAG134,278,802w21Separator112000040122141020111100141001110000210201100213402000
92TGGATCTCAACAGAAGCACGC134,278,817c21Separator000000000000000000000100000000000000000000000000000000
93GGGTGGATCTCAACAGAAGC134,278,820c20Separator000000000000000000011000000010000000000000000000000000
94GGGTGGATCTCAACAGAAGCA134,278,820c21Separator000000000000000000111000010000101000000000000000000000
95TGGGTGGATCTCAACAGAAGC134,278,821c21Separator000000000000000000000000001000000000000000000000000000
96AGGAATTACTTGTCAAAC134,278,823w18Separator000000000000000000000000000000200000000000000000000000
97AGGAATTACTTGTCAAACTT134,278,823w20Separator000000000000000000011000000020000000000000000000000000
98AGGAATTACTTGTCAAACTTT134,278,823w21Separator00000000000000000012109000101010201000000000000000000000
99AGGAATTACTTGTCAAACTTTT134,278,823w22Separator000000000000000000100000000000000000000000000000000000
100AGGAATTACTTGTCAAACTTTTGA134,278,823w24Separator100000000000000000000000000000000000000000000000000000
101ATTACTTGTCAAACTTTTGAGTGC134,278,827w24Separator000000000000000000100000000000000000000000000000000000
102TTACTTGTCAAACTTTTGAGT134,278,828w21Separator000000000000000000001000000000000000000000000000000000
103TAATTCCTCTGGGTGGATCTC134,278,830c21Separator000000000000000000000000000000000000000000010000000000
104AGTAATTCCTCTGGGTGGATCTCA134,278,832c24Separator000000000000000010000000000000000000000000000000000000
105TTGACAAGTAATTCCTCTG134,278,838c19Separator000000000000000000000000000000000200000000000000000000
106AGTTTGACAAGTAATTCCT134,278,841c19Separator000000000000000000000000000000000200000000000000000000
107AGTTTGACAAGTAATTCCTCT134,278,841c21Separator000000000020000000245001201020020000000000000000000000
108AAAAGTTTGACAAGTAATTCCTCT134,278,844c24Separator000000000000000000311000000000000000000000000000000000
109TGAGTGCTTGGTTAGTTGGT134,278,844w20Separator000000000000000000001000000000000000000000000000000000
110TGAGTGCTTGGTTAGTTGGTT134,278,844w21Separator4103425021412356501130451031240022414010251104274111120
111GAGTGCTTGGTTAGTTGGTTT134,278,845w21Separator000000000000000000010000000000000000000000000000000000
112TCAAAAGTTTGACAAGTAATTC134,278,846c22Separator000000000000000000100000000000000000000000000000000000
113TGGTTAGTTGGTTTCGTATTTCTT134,278,852w24Separator000000000000000000100000000000000000000000000000000000
114TTAGTTGGTTTCGTATTTCTT134,278,855w21Separator000000000000000000000010000000000000000000000000000000
115CCAACTAACCAAGCACTCAA134,278,862c20Separator000000000010000000000000000000000000000001000000000000
116CCAACTAACCAAGCACTCAAA134,278,862c21Separator000040000032100000000000000000000000000000000200000000
117TCGTATTTCTTGTGTTTC134,278,865w18Separator000000000000000000000000100100000000000000000000000000
118GAAACCAACTAACCAAGCACTCAAA134,278,866c25Separator000010000000000000000000000000000000000000000000000000
119TGAAACACAAGAAATACGAA134,278,883c20Separator000000000000000000000000000000000003000000000000000000
120TGAAACACAAGAAATACGAAA134,278,883c21Separator000000000000000000100000000000000000000000000000000000
121ACCTTCTTATCATCGACCT134,278,924w19Separator000000000000000000000001000000000000000000000000000000
122TCTTATCATCGACCTGCAAATT134,278,928w22Separator000000000000000000000000000400000000000000000000000000
123TTGCAGGTCGATGATAAGA134,278,946c19Separator000000000000000000110000100000000000000000000000000000
124TTGCAGGTCGATGATAAGAA134,278,946c20Separator000000000000000000000000000000000000000010000000000000
125TTGCAGGTCGATGATAAGAAG134,278,946c21Separator131011301130010213110132101110110300422000101110001000
126TTGCAGGTCGATGATAAGAAGGT134,278,946c23Separator000000000000000000001000000000000000000000000000000000
127AATTTGCAGGTCGATGATAAGAAG134,278,949c24Separator000000000000000000010000000000000000000000000000000000



Number of unique reads retrieved on this page: 127