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Arabidopsis small RNA Control Panel - at_sRNA2 (small RNA)
Please make your selections and press "Submit".
Select display options (for "Gene/IGR Analysis" page)
Abundance view:
Sums of abundances
Sums of hits-normalized-abundance
Individual abundances
Color small RNA sequences by size:
Yes
No
Show K-mers:
Yes
No
Select small RNA display options
Select small RNA sizes to display:
<=20
21
22
23
24
>=25
Phasing analysis enabled:
Yes
No
Each phasing cycle's length:
19
20
21
22
23
24
25
Strand(s) to show phasing windows:
Both strands (each window on its original strand -- the default view)
Top-strand only (bottom-strand windows converted to top-strand)
Bottom-strand only (top-strand windows converted to bottom-strand)
Top and bottom strands together (all windows on each strand)
Optional: Highlight all positions exceeding defined score (0 - 100) >=
Select small RNA libraries
You can move libraries between "Not Selected" and "Selected" by highlighting one or more libraries and then clicking on the right/left arrow. Note: If you select no libraries, all the libraries are displayed by default.
Not Selected
Visual marker
Selected
Not Selected libraries
Selected libraries
C0F1 (Col-0, flower, untreated #1)
C0F2 (Col-0, flower, untreated #2)
d1F1 (dcl1-7, flower, untreated #1)
d1F2 (dcl1-7, flower, untreated #2)
d234F1 (dcl234, flower, untreated #1)
d234F2 (dcl234, flower, untreated #2)
r2F1 (rdr2, flower, untreated #1)
r2F2 (rdr2, flower, untreated #2)
r2FSb (rdr2, flower, submergence)
r2FNaSb (rdr2, flower, salt and submergence)
r2FNa1 (rdr2, flower, salt #1)
r2FNa2 (rdr2, flower, salt #2)
r2FL (rdr2, flower, cold)
r2FD (rdr2, flower, drought)
C0FCSb (Col-0, flower, control for submergence)
C0FSb (Col-0, flower, submergence)
r2SC1 (rdr2, seedling, control for heat and salt)
r2SH (rdr2, seedling, heat)
r2SNa1 (rdr2, seedling, salt#1)
r2SC3 (rdr2, seedling, control for submergene and salt)
r2SNa2 (rdr2, seedling, salt#2)
r2SSb (rdr2, seedling, submergence)
r2SNaSb (rdr2, seedling, submergence and salt)
r2SC2 (rdr2, seedling, control of phosphate starvation)
r2SP (rdr2, seedling, phosphate starvation)
C0RC1 (Col-0, root, control for nickel stress)
C0RNi (Col-0, root, nickel stress)
AtCM (Arabidopsis, mixed stage inflorescence of wildtype (Col-0) control)
AT_Leaf (Leaf wild type col0)
At_miR1507OX_1 (Medicago miR1507 overexpression in Arabidopsis rep1)
At_miR1507OX_2 (Medicago miR1507 overexpression in Arabidopsis rep2)
At_miR2109OX_1 (Medicago miR2109 overexpression in Arabidopsis rep1)
At_miR2109OX_2 (Medicago miR2109 overexpression in Arabidopsis rep2)
At_miR2118aOX_1 (Medicago miR2118a overexpression in Arabidopsis rep1)
At_miR2118aOX_2 (Medicago miR2118a overexpression in Arabidopsis rep2)
At_miR2118bOX_1 (Medicago miR2118b overexpression in Arabidopsis rep1)
At_miR2118bOX_2 (Medicago miR2118b overexpression in Arabidopsis rep2)
At_miR2118cOX_1 (Medicago miR2118c overexpression in Arabidopsis rep1)
At_miR2118cOX_2 (Medicago miR2118c overexpression in Arabidopsis rep2)
At_miROX_control (Empty vector control for miRNA overexpression lines in Arabidopsis)
At_miROX_ck_2 (Empty vector control for miRNA overexpression lines in Arabidopsis)
hen1-8 (hen1-8)
hen1-8 ntp2-1 (hen1-8 ntp2-1)
hen1-8 urt1-1 (hen1-8 urt1-1)
hen1-8 ntp4-1 (hen1-8 ntp4-1)
hen1-8 ntp5-1 (hen1-8 ntp5-1)
hen1-8 ntp6-1 (hen1-8 ntp6-1)
hen1-8 ntp7-1 (hen1-8 ntp7-1)
hen1-8 ntp8-1 (hen1-8 ntp8-1)
hen1-8 ntp10-1 (hen1-8 ntp10-1)
hen1-8 r2 (hen1-8 r2)
hen1-8 heso1-1 (hen1-8 heso1-1)
hen1-8 mee44 (hen1-8 mee44)
Wt_d (Arabidopsis Col-0 unopened flower buds)
Col_d (Arabidopsis wildtype Col-0 unopened flower buds)
Total number of libraries you have selected: 55 out of 55 (this won't change until you press the "Submit" button)
Open other sites in the same browser tab/window
Yes
No
Set the cookie(s) to expire
On closure of browser
After 7 days
After 30 days (default)
After 365 days
Please press the "Submit" button to finalize your selection.