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Brassica rapa small RNA Control Panel - brassica_sRNA (small RNA)
Please make your selections and press "Submit".
Select display options (for "Gene/IGR Analysis" page)
Abundance view:
Sums of abundances
Sums of hits-normalized-abundance
Individual abundances
Color small RNA sequences by size:
Yes
No
Show K-mers:
Yes
No
Select small RNA display options
Select small RNA sizes to display:
<=20
21
22
23
24
>=25
Phasing analysis enabled:
Yes
No
Each phasing cycle's length:
19
20
21
22
23
24
25
Strand(s) to show phasing windows:
Both strands (each window on its original strand -- the default view)
Top-strand only (bottom-strand windows converted to top-strand)
Bottom-strand only (top-strand windows converted to bottom-strand)
Top and bottom strands together (all windows on each strand)
Optional: Highlight all positions exceeding defined score (0 - 100) >=
Select small RNA libraries
You can move libraries between "Not Selected" and "Selected" by highlighting one or more libraries and then clicking on the right/left arrow. Note: If you select no libraries, all the libraries are displayed by default.
Not Selected
Visual marker
Selected
Not Selected libraries
Selected libraries
Bn_rdr2_1 (Anthers from a Brassica rapa rdr2 mutant, rep 1)
Bn_rdr2_2 (Anthers from a Brassica rapa rdr2 mutant, rep 2)
Bn_wt_1 (Anthers from Brassica rapa wild type, rep 1)
Bn_wt_2 (Anthers from Brassica rapa wild type, rep 2)
Bn_wt_3 (Anthers from Brassica rapa wild type, rep 3)
SRR2136646 (flower buds (0-6mm) from Brassica rapa subsp. pekinensis Tyms (sterile buds))
SRR2136647 (flower buds (0-6mm) from Brassica rapa subsp. pekinensis (fertile buds))
SRR2912893 (Stem from Brassica rapa subsp. pekinensis)
SRR2912894 (Leaf from Brassica rapa subsp. pekinensis)
SRR2912891 (Roots from Brassica rapa subsp. pekinensis)
Total number of libraries you have selected: 10 out of 10 (this won't change until you press the "Submit" button)
Open other sites in the same browser tab/window
Yes
No
Set the cookie(s) to expire
On closure of browser
After 7 days
After 30 days (default)
After 365 days
Please press the "Submit" button to finalize your selection.