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N. benthi small RNA Control Panel - nbenthi_sRNA_SOL (small RNA)
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Select display options (for "Gene/IGR Analysis" page)
Abundance view:
Sums of abundances
Sums of hits-normalized-abundance
Individual abundances
Color small RNA sequences by size:
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Show K-mers:
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Select small RNA display options
Select small RNA sizes to display:
<=20
21
22
23
24
>=25
Phasing analysis enabled:
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Each phasing cycle's length:
19
20
21
22
23
24
25
Strand(s) to show phasing windows:
Both strands (each window on its original strand -- the default view)
Top-strand only (bottom-strand windows converted to top-strand)
Bottom-strand only (top-strand windows converted to bottom-strand)
Top and bottom strands together (all windows on each strand)
Optional: Highlight all positions exceeding defined score (0 - 100) >=
Select small RNA libraries
You can move libraries between "Not Selected" and "Selected" by highlighting one or more libraries and then clicking on the right/left arrow. Note: If you select no libraries, all the libraries are displayed by default.
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Visual marker
Selected
Not Selected libraries
Selected libraries
25Bm_Sat (Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat) at 25 deg C in Nicotiana benthamiana.)
Nben_Flr_a (Nicotiana benthamiana flower. Rep 1)
Nben_Flr_b (Nicotiana benthamiana flower. Rep 2)
Nben_Stem_a (Nicotiana benthamiana stem. Rep 1)
Nben_Stem_b (Nicotiana benthamiana stem. Rep 2)
Nben_Root_a (Nicotiana benthamiana root. Rep 1)
Nben_Root_b (Nicotiana benthamiana root. Rep 2)
Nben_Leaf_a (Nicotiana benthamiana leaf. Rep 1)
Nben_Leaf_b (Nicotiana benthamiana leaf. Rep 2)
Nben_Seedling_a (Nicotiana benthamiana seedling. Rep 1)
Nben_Seedling_b (Nicotiana benthamiana seedling. Rep 2)
NBen_LeafBTI (sRNA Nicotiana Atlas)
25Bm (Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and No salt at 25 deg C in Nicotiana benthamiana.)
25Mock (Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat), Mock controlat 25 deg C in Nicotiana benthamiana.)
18Bm_Sat (Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat) at 18 deg C in Nicotiana benthamiana.)
18Bm (Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and No salt at 18 deg C in Nicotiana benthamiana.)
18Mock (Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat), Mock controlat 18 deg C in Nicotiana benthamiana.)
cym19s_i (p19syn_nb.cym19s.p19ip-input; GSM2043450: p19syn_nb.cym19s.p19ip-input; Nicotiana benthamiana; ncRNA-Seq)
cym19s_ip (p19syn_nb.cym19s.p19ip-ip; GSM2043451: p19syn_nb.cym19s.p19ip-ip; Nicotiana benthamiana; ncRNA-Seq)
mock_i (p19syn_nb.mock.p19ip-input; GSM2043452: p19syn_nb.mock.p19ip-input; Nicotiana benthamiana; ncRNA-Seq)
mock_ip (p19syn_nb.mock.p19ip-ip; GSM2043453: p19syn_nb.mock.p19ip-ip; Nicotiana benthamiana; ncRNA-Seq)
rsv_i1 (wt_nb.cymrsv.p19ip-input; GSM2043454: wt_nb.cymrsv.p19ip-input; Nicotiana benthamiana; ncRNA-Seq)
rsv_ip (wt_nb.cymrsv.p19ip-ip; GSM2043455: wt_nb.cymrsv.p19ip-ip; Nicotiana benthamiana; ncRNA-Seq)
cym19_1ip (wt_nb.cym19s.agoip_ago1ip; GSM2043456: wt_nb.cym19s.agoip_ago1ip; Nicotiana benthamiana; ncRNA-Seq)
cym19_2ip (wt_nb.cym19s.agoip_ago2ip; GSM2043457: wt_nb.cym19s.agoip_ago2ip; Nicotiana benthamiana; ncRNA-Seq)
cym19_i (wt_nb.cym19s.agoip_input; GSM2043458: wt_nb.cym19s.agoip_input; Nicotiana benthamiana; ncRNA-Seq)
rsv_1ip (wt_nb.cymrsv.agoip_ago1ip; GSM2043459: wt_nb.cymrsv.agoip_ago1ip; Nicotiana benthamiana; ncRNA-Seq)
rsv_2ip (wt_nb.cymrsv.agoip_ago2ip; GSM2043460: wt_nb.cymrsv.agoip_ago2ip; Nicotiana benthamiana; ncRNA-Seq)
rsv_agoi (wt_nb.cymrsv.agoip_input; GSM2043461: wt_nb.cymrsv.agoip_input; Nicotiana benthamiana; ncRNA-Seq)
m_1ip (wt_nb.mock.agoip_ago1ip; GSM2043462: wt_nb.mock.agoip_ago1ip; Nicotiana benthamiana; ncRNA-Seq)
m_2ip (wt_nb.mock.agoip_ago2ip; GSM2043463: wt_nb.mock.agoip_ago2ip; Nicotiana benthamiana; ncRNA-Seq)
m_i (wt_nb.mock.agoip_input; GSM2043464: wt_nb.mock.agoip_input; Nicotiana benthamiana; ncRNA-Seq)
cym19_d (wt_nb.cym19s.direct; GSM2043465: wt_nb.cym19s.direct; Nicotiana benthamiana; ncRNA-Seq)
mock_d (wt_nb.mock.direct; GSM2043466: wt_nb.mock.direct; Nicotiana benthamiana; ncRNA-Seq)
cym19_1ip2 (wt_nb.cym19s.agoip_ago1ip.biorep.sRNA; GSM2257527: wt_nb.cym19s.agoip_ago1ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
cym19_2ip2 (wt_nb.cym19s.agoip_ago2ip.biorep.sRNA; GSM2257528: wt_nb.cym19s.agoip_ago2ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
cym19_i2 (wt_nb.cym19s.agoip_input.biorep.sRNA; GSM2257529: wt_nb.cym19s.agoip_input.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
rsv_1ip2 (wt_nb.cymrsv.agoip_ago1ip.biorep.sRNA; GSM2257530: wt_nb.cymrsv.agoip_ago1ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
rsv_2ip2 (wt_nb.cymrsv.agoip_ago2ip.biorep.sRNA; GSM2257531: wt_nb.cymrsv.agoip_ago2ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
rsv_i2 (wt_nb.cymrsv.agoip_input.biorep.sRNA; GSM2257532: wt_nb.cymrsv.agoip_input.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
m_1ip2 (wt_nb.mock.agoip_ago1ip.biorep.sRNA; GSM2257533: wt_nb.mock.agoip_ago1ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
m_2ip2 (wt_nb.mock.agoip_ago2ip.biorep.sRNA; GSM2257534: wt_nb.mock.agoip_ago2ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
m_i2 (wt_nb.mock.agoip_input.biorep.sRNA; GSM2257535: wt_nb.mock.agoip_input.biorep.sRNA; Nicotiana benthamiana; ncRNA-Seq)
pvx_i (PVX; GSM2536365: Input PVX; Nicotiana benthamiana; ncRNA-Seq)
HCPro_i (PVX-P1-6x-HCPro; GSM2536366: Input PVX-P1-6x-HCPro; Nicotiana benthamiana; ncRNA-Seq)
HCPro_t2 (PVX-P1-6x-HCPro; GSM2536367: HCPro sample 2; Nicotiana benthamiana; ncRNA-Seq)
HCPromut_t (PVX-P1-6x-HCPro mutB; GSM2536368: HCPro mutB sample 2; Nicotiana benthamiana; ncRNA-Seq)
Nb_miR173 (sRNA_Nben_miR173; GSM1698356: Nicotiana benthamiana miR173; Nicotiana benthamiana; miRNA-Seq)
Nb_Leaves (sRNA_Nben_Leaves_ctrl; GSM1698355: Nicotiana benthamiana control; Nicotiana benthamiana; miRNA-Seq)
NNTMV8hr (NNTMV8hr; Genome-wide characterization of miRNAs involved in N gene-mediated immunity in response to tobacco mosaic virus in Nicotiana. benthamiana)
NNTMV2hr (NNTMV2hr; Genome-wide characterization of miRNAs involved in N gene-mediated immunity in response to tobacco mosaic virus in Nicotiana. benthamiana)
NNTMV0hr (NNTMV0hr; Genome-wide characterization of miRNAs involved in N gene-mediated immunity in response to tobacco mosaic virus in Nicotiana. benthamiana)
Nb_1Va (sRNA_Nben_Leaf_Axt_1a; GSM1186337: Library1V_run1; Nicotiana benthamiana; RNA-Seq)
Nb_1Vb (sRNA_Nben_Leaf_Axt_1b; GSM1186338: Library1V_run2; Nicotiana benthamiana; RNA-Seq)
Nb_1Ua (sRNA_Nben_Leaf_Axt_2a; GSM1186335: Library1U_run1; Nicotiana benthamiana; RNA-Seq)
Nb_1Ub (sRNA_Nben_Leaf_Axt_2b; GSM1186336: Library1U_run2; Nicotiana benthamiana; RNA-Seq)
Ngfp10_1 (Nicotiana benthamiana bud 3-6 mm, wild type. Rep 1)
Ngfp5_1 (Nicotiana benthamiana bud 3-6 mm, wild type. Rep 2)
Npg6_1 (Nicotiana benthamiana bud 3-6 mm, mutant B2 protein. Rep 1)
Npg8_2 (Nicotiana benthamiana bud 3-6 mm, mutant B2 protein. Rep 2)
Npg_12_1 (Nicotiana benthamiana bud 3-6 mm, mutant B2 protein. Rep 3)
Total number of libraries you have selected: 61 out of 61 (this won't change until you press the "Submit" button)
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