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Rice small RNA Control Panel - rice_sRNA (small RNA)
Please make your selections and press "Submit".
Select display options (for "Gene/IGR Analysis" page)
Abundance view:
Sums of abundances
Sums of hits-normalized-abundance
Individual abundances
Color small RNA sequences by size:
Yes
No
Show K-mers:
Yes
No
Select small RNA display options
Select small RNA sizes to display:
<=20
21
22
23
24
>=25
Phasing analysis enabled:
Yes
No
Each phasing cycle's length:
19
20
21
22
23
24
25
Strand(s) to show phasing windows:
Both strands (each window on its original strand -- the default view)
Top-strand only (bottom-strand windows converted to top-strand)
Bottom-strand only (top-strand windows converted to bottom-strand)
Top and bottom strands together (all windows on each strand)
Optional: Highlight all positions exceeding defined score (0 - 100) >=
Select small RNA libraries
You can move libraries between "Not Selected" and "Selected" by highlighting one or more libraries and then clicking on the right/left arrow. Note: If you select no libraries, all the libraries are displayed by default.
Not Selected
Visual marker
Selected
Not Selected libraries
Selected libraries
G1_5 (Total sRNA, extract from 1-5 days grain after fertilization)
G6_10 (Total sRNA, extract from 6-10 days grain after fertilization)
AGO1a_IP (sRNAs from AGO1a IP, extracted from 3-week-old seedlings)
AGO1b_IP (sRNAs from AGO1b IP, extracted from 3-week-old seedlings)
AGO1c_IP (sRNAs from AGO1c IP, extracted from 3-week-old seedlings)
AGO_CT (sRNA control for IP, total small RNA extracted from 3-weeks-old seedlings)
AGO4a_IP (sRNA from AGO4a IP, extracted from 3-week-old seedlings)
AGO4b_IP (sRNA from AGO4b IP, extracted from 3-week-old seedlings)
AGO16_IP (sRNA from AGO16 IP, extracted from 3-week-old seedlings)
dcl1_sdl (sRNA from os dcl1, extracted from 3-week-old seedlings)
dcl3_sdl (sRNA from os dcl3, extracted from 3-week-old seedlings)
rdr2_sdl (sRNA from os rdr2, extracted from 3-week-old seedlings)
wt_sdl (sRNA from wildtype, extracted from 3-week-old seedlings)
ME5a (14-day seedling leaf, Xoo inoculated, bacterial mutant ME5)
Pxo99a (14-day seedling leaf, Xoo inoculated, strain WR or PXO99A)
OsMock (Rice leaves, mock treated with 10 mM MgCl2)
Leaf (Rice leaf, from Zhonghua 10)
Root (Rice root, from Zhonghua 10)
BCP (Rice bicellular pollen, from Zhonghua 10)
Callus (Rice callus cells, from Zhonghua 10)
TCP (Rice tricellular pollen, from Zhonghua 10)
UNM (Rice uninucleate microspores, from Zhonghua 10)
LACt1 (leaves, Wildtype control for AGO mutant library)
La706 (leaves, argonaute mutant, T-DNA insertion in AGO706)
La706c (Leaves, argonaute mutant in AGO706. Repeated SBS run.)
Lros1b (Leaves, ros1 mutant. Repeated SBS run.)
LOsNpb (Nipponbare leaf, sRNA library)
OsTCP_b (Rice tricellular pollen (TCP), from GEO record GSM722128)
rdr6_HT (rol_1, sterile, panicle of rdr6 grown in high temperature)
rdr6_LT (rol_4, normal, panicle of rdr6 grown in low temperature)
zh_HT (zh_1, normal, panicle of wildtype Zhonghua11 in high temperature)
zh_LT (zh_4, normal, panicle of wildtype Zhonghua11 in low temperature)
704f (Young inflorescence enclosed in sheaths from dcl4-1 mutant in 93-11 background)
704s (6-day old seedlings from dcl4-1 mutant in 93-11 background)
9311f (young inflorescence enclosed in sheaths from wildtype 93-11)
9311s (6-day old seedlings from wildtype 93-11)
waf1-1 (wavy leaf 1-1 (waf1-1), hen1 mutant allele)
waf1-2 (wavy leaf 1-2 (waf1-2), hen1 mutant allele)
Wt_waf1-1 (Wildtype control (for waf1-1))
Wt_waf1-2 (Wildtype control (for waf1-2))
Wt_HEN1b (wild type Dongjin control for hen1-3 allele)
Seg_Wt_HEN1b (segregating wild type for hen1-3)
Os hen1-3 (Rice oshen1-3 mutant, T-DNA)
58N_1 (Young panicles of Nongken 58, normal fertile line)
58S_1 (Young panicles of Nongken 58S, a male-sterile line)
total_mel1 (Small RNAs from total RNA of mel1 mutant young inflorescences, control for RIP-seq)
total_WT (Small RNAs from total RNA of wildtype young inflorescences, control for RIP-seq)
MEL1IP_WT (RIP-seq of MEL1-bound small RNAs, from wildtype young inflorescences)
MEL1IP_mel1 (RIP-seq of MEL1-bound small RNAs, from mel1 mutant young inflorescences)
WTLamina (Wildtype rice, material from lamina joints of the flag leaf)
3A1Lamina (DCL3a-1 RNAi rice, material from lamina joints of flag leaf)
3A3Lamina (DCL3a-3 RNAi rice, material from lamina joints of flag leaf)
Total number of libraries you have selected: 52 out of 52 (this won't change until you press the "Submit" button)
Open other sites in the same browser tab/window
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No
Set the cookie(s) to expire
On closure of browser
After 7 days
After 30 days (default)
After 365 days
Please press the "Submit" button to finalize your selection.