Arabidopsis small RNA Splice Variant Gene Analysis
Below are maps of all the splice variants annotated for AT4G13495. View a legend that explains the icons and colors in the image below. The aim of this page is to show all splice variants annotated for a given gene. Each viewer panel shows the reads matched to that variant. Adjust libraries/reads or change display options on the control panel. In the control panel, you can show a special "phasing analysis" for small RNAs in this region.
Phasing Analysis (the second viewer for each splice variant): Each dot represents a "window" of ten cycles of small RNAs of length 21 nt (where 21 is set in the control panel under Select phasing analysis options), with the score for the degree of phasing indicated on the Y axis (scores calculated approximately as described by Howell et al., 2007). The red dot is the highest scoring window and has the best score in this region. Other colored dots are windows which are in phase with the highest scoring window -- exactly-in-phase windows appear as filled dots, and almost-in-phase (-1/+1) windows as hollow dots. Only those reads corresponding to the featured length (the default length is 21 nt) are considered.
Click here to jump in the page below to the specific splice variant of AT4G13495:
Model 1 Model 2