Rice small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
RRF	Oryza sativa, root (Nipponbare) RRF	SBS	sRNA	19,685,899	5,348,671	2,736,169	862,814	2M	31	18	GSM1093498
RRG	Oryza sativa, root (Nipponbare) RRG	SBS	sRNA	15,508,855	9,023,751	4,153,720	1,428,411	2M	31	18	GSM1093499
RSF	Oryza sativa, shoot (Nipponbare) RSF	SBS	sRNA	23,183,727	17,776,873	8,293,493	2,604,042	2M	31	18	GSM1093500
RSG	Oryza sativa, shoot (Nipponbare) RSG	SBS	sRNA	23,233,775	14,779,495	5,895,084	1,590,169	2M	31	18	GSM1093501
NNA	Oryza sativa, endosperm (Nipponbare) NNA	SBS	sRNA	18,595,476	13,988,523	5,514,248	1,786,536	2M	31	18	GSM1093502
NEA	Oryza sativa, embryo (Nipponbare) NEA	SBS	sRNA	24,004,327	20,098,079	14,379,065	256,309	2M	31	18	GSM1093503
KNA	Oryza sativa, endosperm (Kitaake) KNA	SBS	sRNA	19,077,971	10,110,699	3,493,037	759,494	2M	31	18	GSM1093504
KEA	Oryza sativa, embryo (Kitaake) KEA	SBS	sRNA	24,986,972	19,242,821	12,661,325	661,857	2M	31	18	GSM1093505
OsEnd5d	endosperm, wild type, 5 DAP	SBS	sRNA	5,944,927	4,429,869	1,174,517	182,664	2M	36	18
OsEnd10d	endosperm, wild type, 10 DAP	SBS	sRNA	5,232,606	3,646,549	1,301,748	146,047	2M	36	18
cle1_5d	endosperm, cle1-4, 5 DAP	SBS	sRNA	5,778,298	3,143,249	1,146,468	1,091,373	2M	36	18
cle1_10d	endosperm, cle1-4, 10 DAP	SBS	sRNA	4,913,927	1,864,857	766,812	1,872,321	2M	36	18
RAs1I	root, +P +As, rep 1	SBS	sRNA	5,938,139	1,590,580	605,789	968,520	2M	35	18
RPAs1I	root, -P +As, rep 1	SBS	sRNA	6,485,708	4,015,046	1,302,490	1,230,164	2M	35	18
RSe1I	root, +S +Se, rep 1	SBS	sRNA	6,150,540	2,413,215	737,874	901,020	2M	35	18
RSSe1I	root, -S +Se, rep 1	SBS	sRNA	6,993,159	5,078,505	1,398,042	546,065	2M	35	18
ShAs1I	shoot, +P +As, rep 1	SBS	sRNA	6,852,473	5,782,047	1,452,072	236,550	2M	35	18
ShPAs1I	shoot, -P +As, rep 1	SBS	sRNA	6,571,391	5,373,259	1,383,693	334,014	2M	35	18
ShSe1I	shoot, +S +Se, rep 1	SBS	sRNA	3,152,628	2,515,192	838,264	147,714	2M	35	18
ShSSe1I	shoot, -S +Se, rep 1	SBS	sRNA	3,566,532	2,987,558	862,313	156,702	2M	35	18
PCDJI	panicle, control Dongjin, rep 1	SBS	sRNA	318,538	201,803	156,090	7,497	2M	31	18
Pr2I	panicle, osrdr2, rep 1	SBS	sRNA	298,523	137,678	101,110	17,975	2M	31	18
RCm1D	Root control for micronutrient deficiency treatments	SBS	sRNA	6,648,971	4,726,330	1,447,940	690,772	2M	36	18
RB1D	Root -B	SBS	sRNA	6,532,225	4,705,286	1,666,593	684,937	2M	36	18
RFe1D	Root -Fe	SBS	sRNA	3,987,688	2,839,864	991,371	479,917	2M	38	18
RZn1D	Root -Zn	SBS	sRNA	5,492,173	4,071,161	874,106	500,895	2M	36	18
ShCm1D	Shoot control for micronutrient deficiency treatments	SBS	sRNA	6,729,374	5,172,697	1,653,226	506,326	2M	36	18
ShB1D	Shoot -B	SBS	sRNA	7,289,285	5,565,003	1,935,603	496,882	2M	36	18
ShFe1D	Shoot -Fe	SBS	sRNA	3,280,999	2,279,146	572,398	143,499	2M	36	18
ShZn1D	Shoot -Zn	SBS	sRNA	5,695,349	4,487,424	1,137,781	290,144	2M	36	18

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".