Rice small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
1d_LT_s6_rep1	ago1d anther stage 4-6 cold stress bio rep 1	SBS	sRNA	8,432,198	3,064,790	1,042,676	4,467,723	3M	34	18	GSM5742714
1d_LT_s6_rep2	ago1d anther stage 4-6 cold stress bio rep 2	SBS	sRNA	10,899,453	4,478,330	1,515,640	5,276,708	3M	34	18	GSM5742715
1d_LT_s6_rep3	ago1d anther stage 4-6 cold stress bio rep 3	SBS	sRNA	9,398,402	3,476,064	1,108,593	4,935,644	3M	34	18	GSM5742716
1d_LT_s8_rep1	ago1d anther stage 7-8 cold stress bio rep 1	SBS	sRNA	5,129,242	960,539	350,527	3,466,514	3M	34	18	GSM5742726
1d_LT_s8_rep2	ago1d anther stage 7-8 cold stress bio rep 2	SBS	sRNA	9,436,448	2,480,603	971,767	6,121,145	3M	34	18	GSM5742727
1d_LT_s8_rep3	ago1d anther stage 7-8 cold stress bio rep 3	SBS	sRNA	11,043,011	3,011,958	1,023,883	6,993,131	3M	34	18	GSM5742728
1d_LT_s9_rep1	ago1d anther stage 9 cold stress bio rep 1	SBS	sRNA	9,993,384	3,024,407	1,077,919	6,116,408	3M	34	18	GSM5742738
1d_LT_s9_rep2	ago1d anther stage 9 cold stress bio rep 2	SBS	sRNA	6,983,844	1,555,667	561,344	4,650,164	3M	34	18	GSM5742739
1d_LT_s9_rep3	ago1d anther stage 9 cold stress bio rep 3	SBS	sRNA	9,885,586	2,485,781	881,386	6,474,732	3M	34	18	GSM5742740
1d_NT_s6_rep1	ago1d anther stage 4-6 normal temperatures bio rep 1	SBS	sRNA	9,612,736	2,603,050	924,740	5,976,912	3M	34	18	GSM5742717
1d_NT_s6_rep2	ago1d anther stage 4-6 normal temperatures bio rep 2	SBS	sRNA	12,471,500	4,007,625	1,254,428	7,070,943	3M	34	18	GSM5742718
1d_NT_s6_rep3	ago1d anther stage 4-6 normal temperatures bio rep 3	SBS	sRNA	11,351,262	3,934,692	1,352,542	6,470,419	3M	34	18	GSM5742719
1d_NT_s8_rep1	ago1d anther stage 7-8 normal temperatures bio rep 1	SBS	sRNA	13,558,602	3,168,190	1,174,356	9,140,408	3M	34	18	GSM5742729
1d_NT_s8_rep2	ago1d anther stage 7-8 normal temperatures bio rep 2	SBS	sRNA	12,473,227	2,713,646	1,011,065	8,860,855	3M	34	18	GSM5742730
1d_NT_s8_rep3	ago1d anther stage 7-8 normal temperatures bio rep 3	SBS	sRNA	13,374,376	2,637,644	1,014,572	9,690,919	3M	34	18	GSM5742731
1d_NT_s9_rep1	ago1d anther stage 9 normal temperatures bio rep 1	SBS	sRNA	12,327,118	1,886,509	717,172	9,468,824	3M	34	18	GSM5742741
1d_NT_s9_rep2	ago1d anther stage 9 normal temperatures bio rep 2	SBS	sRNA	11,226,093	3,234,085	1,163,941	6,876,257	3M	34	18	GSM5742742
1d_NT_s9_rep3	ago1d anther stage 9 normal temperatures bio rep 3	SBS	sRNA	11,991,331	2,727,992	1,016,262	8,168,182	3M	34	18	GSM5742743
FLAG_1D_S6_1_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 4-6 bio rep 1	SBS	sRNA	10,516,168	6,038,069	2,780,625	432,678	3M	34	18	GSM5742750
FLAG_1D_S6_2_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 4-6 bio rep 2	SBS	sRNA	9,494,255	6,247,952	2,587,627	358,107	3M	34	18	GSM5742752
FLAG_1D_S6_3_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 4-6 bio rep 3	SBS	sRNA	8,866,124	5,512,280	2,262,091	397,982	3M	34	18	GSM5742754
FLAG_1D_S6_1_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 4-6 bio rep 1	SBS	sRNA	8,085,688	2,627,559	1,266,304	2,603,944	3M	34	18	GSM5742751
FLAG_1D_S6_2_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 4-6 bio rep 2	SBS	sRNA	7,787,043	2,690,680	1,226,282	2,204,148	3M	34	18	GSM5742753
FLAG_1D_S6_3_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 4-6 bio rep 3	SBS	sRNA	9,600,411	3,455,895	1,564,920	3,338,184	3M	34	18	GSM5742755
FLAG_1D_S8_1_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 7-8 bio rep 1	SBS	sRNA	10,868,588	6,187,802	2,490,680	684,835	3M	34	18	GSM5742756
FLAG_1D_S8_2_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 7-8 bio rep 2	SBS	sRNA	9,608,169	5,646,133	2,324,765	519,427	3M	34	18	GSM5742758
FLAG_1D_S8_3_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 7-8 bio rep 3	SBS	sRNA	9,653,124	5,928,910	2,412,186	634,994	3M	34	18	GSM5742760
FLAG_1D_S8_1_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 7-8 bio rep 1	SBS	sRNA	9,017,969	2,794,417	1,246,518	3,516,931	3M	34	18	GSM5742757
FLAG_1D_S8_2_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 7-8 bio rep 2	SBS	sRNA	7,820,480	2,599,961	1,167,752	2,600,546	3M	34	18	GSM5742759
FLAG_1D_S8_3_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 7-8 bio rep 3	SBS	sRNA	7,770,844	2,357,251	982,499	3,125,699	3M	34	18	GSM5742761
FLAG_1D_S9_1_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 9 bio rep 1	SBS	sRNA	9,690,595	5,324,816	2,402,266	662,790	3M	34	18	GSM5742762
FLAG_1D_S9_2_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 9 bio rep 2	SBS	sRNA	9,866,123	4,890,187	2,272,849	1,050,253	3M	34	18	GSM5742764
FLAG_1D_S9_3_in	OsAGO1d-FLAG-RIP-seq-input anthers stage 9 bio rep 3	SBS	sRNA	9,504,036	5,220,346	2,302,499	801,735	3M	34	18	GSM5742766
FLAG_1D_S9_1_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 9 bio rep 1	SBS	sRNA	10,160,009	3,073,523	1,408,486	3,641,127	3M	34	18	GSM5742763
FLAG_1D_S9_2_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 9 bio rep 2	SBS	sRNA	7,703,010	1,709,098	831,747	3,566,952	3M	34	18	GSM5742765
FLAG_1D_S9_3_RIP	OsAGO1d-FLAG-RIP-seq anthers stage 9 bio rep 3	SBS	sRNA	8,070,965	2,073,978	990,589	3,340,816	3M	34	18	GSM5742767
WT_LT_s6_rep1	WT anther stage 4-6 cold stress bio rep 1	SBS	sRNA	10,162,721	3,393,182	1,093,205	6,105,165	3M	34	18	GSM5742720
WT_LT_s6_rep2	WT anther stage 4-6 cold stress bio rep 2	SBS	sRNA	9,557,768	2,867,090	916,188	5,842,492	3M	34	18	GSM5742721
WT_LT_s6_rep3	WT anther stage 4-6 cold stress bio rep 3	SBS	sRNA	8,619,626	3,018,088	1,032,040	4,246,253	3M	34	18	GSM5742722
WT_LT_s8_rep1	WT anther stage 7-8 cold stress bio rep 1	SBS	sRNA	11,210,452	2,622,746	937,768	7,532,191	3M	34	18	GSM5742732
WT_LT_s8_rep2	WT anther stage 7-8 cold stress bio rep 2	SBS	sRNA	11,167,354	3,945,929	1,255,154	6,242,428	3M	34	18	GSM5742733
WT_LT_s8_rep3	WT anther stage 7-8 cold stress bio rep 3	SBS	sRNA	9,169,235	2,994,547	929,856	5,405,937	3M	34	18	GSM5742734
WT_LT_s9_rep1	WT anther stage 9 cold stress bio rep 1	SBS	sRNA	9,409,708	2,458,290	834,513	6,130,963	3M	34	18	GSM5742744
WT_LT_s9_rep2	WT anther stage 9 cold stress bio rep 2	SBS	sRNA	12,099,397	3,149,566	1,038,082	7,938,661	3M	34	18	GSM5742745
WT_LT_s9_rep3	WT anther stage 9 cold stress bio rep 3	SBS	sRNA	9,452,530	2,930,487	1,003,420	5,702,877	3M	34	18	GSM5742746
WT_NT_s6_rep1	WT anther stage 4-6 normal temperature bio rep 1	SBS	sRNA	9,035,908	2,945,998	1,037,035	5,379,521	3M	34	18	GSM5742723
WT_NT_s6_rep2	WT anther stage 4-6 normal temperature bio rep 2	SBS	sRNA	10,371,683	3,241,204	1,145,499	6,405,005	3M	34	18	GSM5742724
WT_NT_s6_rep3	WT anther stage 4-6 normal temperature bio rep 3	SBS	sRNA	8,373,910	3,058,616	1,066,941	4,715,622	3M	34	18	GSM5742725
WT_NT_s8_rep1	WT anther stage 7-8 normal temperature bio rep 1	SBS	sRNA	9,253,737	3,310,894	1,163,845	5,012,491	3M	34	18	GSM5742735
WT_NT_s8_rep2	WT anther stage 7-8 normal temperature bio rep 2	SBS	sRNA	10,052,371	2,716,483	1,007,235	6,577,861	3M	34	18	GSM5742736
WT_NT_s8_rep3	WT anther stage 7-8 normal temperature bio rep 3	SBS	sRNA	11,540,941	3,290,169	1,195,844	7,288,324	3M	34	18	GSM5742737
WT_NT_s9_rep1	WT anther stage 9 normal temperature bio rep 1	SBS	sRNA	8,629,996	2,027,936	756,460	5,958,308	3M	34	18	GSM5742747
WT_NT_s9_rep2	WT anther stage 9 normal temperature bio rep 1	SBS	sRNA	8,224,395	1,451,391	567,591	5,647,545	3M	34	18	GSM5742748
WT_NT_s9_rep3	WT anther stage 9 normal temperature bio rep 1	SBS	sRNA	10,538,713	1,377,196	595,325	8,355,107	3M	34	18	GSM5742749

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".