Rice small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
ShCs1I shoot, control for submergence #1SBSsRNA2,701,4672,074,335923,97689,8512M3318
ShCs2N shoot, control for submergence #2SBSsRNA6,454,4745,238,6091,324,545441,7522M3618
ShSb1I shoot, submergence #1SBSsRNA2,851,3332,312,0261,007,66184,6972M3318
ShSb2N shoot, submergence #2SBSsRNA5,809,1924,658,0741,022,933323,7022M3618
ShSbNa1I shoot, submergence + salt #1SBSsRNA492,246338,577176,28532,8332M3118
ShSbNa2N shoot, submergence + salt #2SBSsRNA5,473,2674,360,271656,478373,0842M3618
PCs1D panicle, control for submergence #1SBSsRNA5,962,4534,190,6951,479,618142,2162M3518
PCs2D panicle, control for submergence #2SBSsRNA9,306,5907,732,0882,695,287273,1632M3418
PSb1D panicle, submergence #1SBSsRNA5,697,2993,971,5491,303,742143,2712M3518
PSb2D panicle, submergence #2SBSsRNA8,837,8347,109,6532,264,050426,6342M3418
OSA238 Two-week-old shoot,wt,control for submergence,biological replicate #1SBSsRNA16,903,3499,672,8022,942,1434,708,7352M3118
OSA239 Two-week-old shoot,wt,submergence 3days,biological replicate #1SBSsRNA14,093,9206,035,3222,126,8455,639,3282M3118
OSA240 Two-week-old shoot,wt,Recovery 3 days,biological replicate #1SBSsRNA11,453,0935,800,3471,932,8533,693,2362M3118
OSA241 Two-week-old shoot,DCL3aRNAi,control for submergence,biological replicate #1SBSsRNA13,254,6744,835,9121,421,5966,286,4142M3118
OSA242 Two-week-old shoot,DCL3aRNAi,submergence 3days,biological replicate #1SBSsRNA11,920,8304,061,5391,496,1195,774,4362M3118
OSA243 Two-week-old shoot,DCL3aRNAi,Recovery 3 days,biological replicate #1SBSsRNA15,394,1375,512,6691,638,6827,280,7562M3118
OSA244 Two-week-old shoot,DCL1RNAi,control for submergence,biological replicate #1SBSsRNA12,361,4545,607,9141,908,3774,796,2582M3118
OSA245 Two-week-old shoot,DCL1RNAi,submergence 3days,biological replicate #1SBSsRNA13,891,6194,763,0481,634,0576,527,2522M3118
OSA246 Two-week-old shoot,DCL1RNAi,Recovery 3 days,biological replicate #1SBSsRNA12,232,3935,198,5391,820,8164,991,3032M3118
OSA247 Two-week-old shoot,wt,control for submergence,biological replicate #2SBSsRNA12,268,3597,389,8382,335,5443,184,6132M3118
OSA248 Two-week-old shoot,wt,submergence 3days,biological replicate #2SBSsRNA12,669,9214,671,4661,536,6476,097,4922M3118
OSA249 Two-week-old shoot,wt,Recovery 3 days,biological replicate #2SBSsRNA9,461,5635,045,8731,681,9172,890,4412M3118
OSA250 Two-week-old shoot,DCL3aRNAi,control for submergence,biological replicate #2SBSsRNA12,895,8095,348,9271,416,1035,742,4982M3118
OSA251 Two-week-old shoot,DCL3aRNAi,submergence 3days,biological replicate #2SBSsRNA9,069,4552,974,3561,027,1084,608,8952M3118
OSA252 Two-week-old shoot,DCL3aRNAi,Recovery 3 days,biological replicate #2SBSsRNA2,368,117647,315161,3941,273,8022M3118
OSA253 Two-week-old shoot,DCL1RNAi,control for submergence,biological replicate #2SBSsRNA15,691,2307,947,0302,507,5175,460,4222M3118
OSA254 Two-week-old shoot,DCL1RNAi,submergence 3days,biological replicate #2SBSsRNA12,687,4545,178,7141,670,3545,353,8022M3118
OSA255 Two-week-old shoot,DCL1RNAi,Recovery 3 days,biological replicate #2SBSsRNA14,660,2916,757,3831,941,3515,259,7262M3118
OSA256 Two-week-old shoot,wt,control for submergence,biological replicate #3SBSsRNA24,772,31413,847,8173,605,8736,929,1822M3118
OSA257 Two-week-old shoot,wt,submergence 3days,biological replicate #3SBSsRNA13,007,0375,296,8071,920,4825,690,1432M3118
OSA258 Two-week-old shoot,wt,Recovery 3 days,biological replicate #3SBSsRNA13,656,3307,080,4082,218,3394,313,5942M3118
OSA259 Two-week-old shoot,DCL3aRNAi,control for submergence,biological replicate #3SBSsRNA13,759,9145,226,3481,621,3936,229,3282M3118
OSA260 Two-week-old shoot,DCL3aRNAi,submergence 3days,biological replicate #3SBSsRNA15,973,1826,137,8302,042,4596,945,8482M3118
OSA261 Two-week-old shoot,DCL3aRNAi,Recovery 3 days,biological replicate #3SBSsRNA12,407,0984,263,1051,347,4945,739,7922M3118
OSA262 Two-week-old shoot,DCL1RNAi,control for submergence,biological replicate #3SBSsRNA11,717,4886,593,2362,311,7623,194,1982M3118
OSA263 Two-week-old shoot,DCL1RNAi,submergence 3days,biological replicate #3SBSsRNA15,192,0196,380,7702,121,6536,352,9362M3118
OSA264 Two-week-old shoot,DCL1RNAi,Recovery 3 days,biological replicate #3SBSsRNA8,902,7185,043,5391,897,3182,066,6902M3118



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".