Tobacco small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code	Title	Technology	Library Type	Total Sequences	Genome Matched Reads*	Distinct Genome Matched Reads*	t/r/sn/snoRNA Matched Reads	Norm. Base Value	Max. Len. of Reads	Min. Len. of Reads	GEO Accession Number
38_4_BR3_CHL	38-4 (sense hairpin dsRNA); Rep3; Chloroplast-enriched RNA	SBS	sRNA	10,810,238	3,199,503	518,460	5,719,568	5M	40	15	SRX18440415
38_4_BR4_CHL	38-4 (sense hairpin dsRNA); Rep4; Chloroplast-enriched RNA	SBS	sRNA	10,819,442	3,235,155	466,230	5,469,545	5M	40	15	SRX18440437
38_4_BR5_CHL	38-4 (sense hairpin dsRNA); Rep5; Chloroplast-enriched RNA	SBS	sRNA	9,869,669	2,841,947	390,664	5,282,833	5M	40	15	SRX18440459
38_8_BR3_CHL	38-8 (sense hairpin dsRNA); Rep3; Chloroplast-enriched RNA	SBS	sRNA	11,756,268	3,305,554	516,632	6,023,984	5M	40	15	SRX18440405
38_8_BR4_CHL	38-8 (sense hairpin dsRNA); Rep4; Chloroplast-enriched RNA	SBS	sRNA	12,930,964	4,866,552	590,692	5,696,465	5M	40	15	SRX18440407
38_8_BR5_CHL	38-8 (sense hairpin dsRNA); Rep5; Chloroplast-enriched RNA	SBS	sRNA	11,369,886	3,286,397	583,119	5,823,356	5M	40	15	SRX18440409
39_3_BR3_CHL	39-3 (antisense hairpin dsRNA); Rep3; Chloroplast-enriched RNA	SBS	sRNA	14,098,056	6,048,999	642,731	5,668,301	5M	40	15	SRX18440411
39_3_BR4_CHL	39-3 (antisense hairpin dsRNA); Rep4; Chloroplast-enriched RNA	SBS	sRNA	15,699,406	5,813,823	624,146	6,850,954	5M	40	15	SRX18440413
39_3_BR5_CHL	39-3 (antisense hairpin dsRNA); Rep5; Chloroplast-enriched RNA	SBS	sRNA	13,130,547	5,344,507	650,981	5,575,285	5M	40	15	SRX18440416
39_4_BR3_CHL	39-4 (antisense hairpin dsRNA); Rep3; Chloroplast-enriched RNA	SBS	sRNA	10,433,091	4,707,317	387,947	3,998,009	5M	40	15	SRX18440418
39_4_BR4_CHL	39-4 (antisense hairpin dsRNA); Rep4; Chloroplast-enriched RNA	SBS	sRNA	18,077,701	8,145,236	812,039	6,765,767	5M	40	15	SRX18440420
39_4_BR5_CHL	39-4 (antisense hairpin dsRNA); Rep5; Chloroplast-enriched RNA	SBS	sRNA	14,905,621	6,590,380	492,748	5,786,614	5M	40	15	SRX18440422
40_4_BR3_CHL	40-4 (convergent promoter dsRNA); Rep3; Chloroplast-enriched RNA	SBS	sRNA	12,685,968	4,333,847	381,280	5,503,569	5M	40	15	SRX18440427
40_4_BR4_CHL	40-4 (convergent promoter dsRNA); Rep4; Chloroplast-enriched RNA	SBS	sRNA	13,344,309	4,537,985	444,944	6,049,751	5M	40	15	SRX18440429
40_4_BR5_CHL	40-4 (convergent promoter dsRNA); Rep5; Chloroplast-enriched RNA	SBS	sRNA	11,517,519	3,551,446	534,204	5,613,312	5M	40	15	SRX18440431
40_6_BR2_CHL	40-6 (convergent promoter dsRNA); Rep2; Chloroplast-enriched RNA	SBS	sRNA	6,047,102	1,525,749	331,052	3,386,209	5M	40	15	SRX18440434
40_6_BR3_CHL	40-6 (convergent promoter dsRNA); Rep3; Chloroplast-enriched RNA	SBS	sRNA	12,835,893	3,989,989	519,231	6,683,021	5M	40	15	SRX18440436
40_6_BR4_CHL	40-6 (convergent promoter dsRNA); Rep4; Chloroplast-enriched RNA	SBS	sRNA	13,219,262	5,885,603	578,686	4,414,028	5M	40	15	SRX18440439
WT_BR3_CHL	WT; Rep3; Chloroplast-enriched RNA	SBS	sRNA	12,954,703	5,791,978	433,823	4,908,082	5M	40	15	SRX18440486
WT_BR4_CHL	WT; Rep4; Chloroplast-enriched RNA	SBS	sRNA	13,798,983	6,345,179	466,419	5,080,416	5M	40	15	SRX18440487
WT_BR5_CHL	WT; Rep5; Chloroplast-enriched RNA	SBS	sRNA	14,888,938	5,472,812	414,982	6,961,847	5M	40	15	SRX18440488
38_4_BR1_WCE	38-4 (sense hairpin dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	11,586,657	6,113,661	3,138,828	4,406,543	5M	40	15	SRX18440403
38_4_BR2_WCE	38-4 (sense hairpin dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	10,146,913	5,515,686	2,657,625	3,648,170	5M	40	15	SRX18440404
38_4_BR3_WCE	38-4 (sense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	15,214,599	5,610,742	2,804,869	7,197,348	5M	40	15	SRX18440426
38_4_BR4_WCE	38-4 (sense hairpin dsRNA); Rep4; Whole-cell RNA	SBS	sRNA	12,162,799	6,863,300	3,439,708	3,871,170	5M	40	15	SRX18440448
38_4_BR5_WCE	38-4 (sense hairpin dsRNA); Rep5; Whole-cell RNA	SBS	sRNA	12,466,357	6,524,140	3,198,057	4,608,570	5M	40	15	SRX18440470
38_8_BR1_WCE	38-8 (sense hairpin dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	10,216,627	5,155,217	2,762,970	4,036,952	5M	40	15	SRX18440481
38_8_BR2_WCE	38-8 (sense hairpin dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	7,852,520	3,872,900	1,996,100	3,238,217	5M	40	15	SRX18440489
38_8_BR3_WCE	38-8 (sense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	10,237,313	5,362,714	2,824,512	3,008,826	5M	40	15	SRX18440406
38_8_BR4_WCE	38-8 (sense hairpin dsRNA); Rep4; Whole-cell RNA	SBS	sRNA	12,953,714	7,053,993	3,769,571	4,107,326	5M	40	15	SRX18440408
38_8_BR5_WCE	38-8 (sense hairpin dsRNA); Rep5; Whole-cell RNA	SBS	sRNA	11,338,640	4,673,155	2,366,770	5,100,090	5M	40	15	SRX18440410
39_3_BR3_WCE	39-3 (antisense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	8,903,481	5,484,224	2,536,121	2,470,965	5M	40	15	SRX18440412
39_3_BR4_WCE	39-3 (antisense hairpin dsRNA); Rep4; Whole-cell RNA	SBS	sRNA	9,434,334	5,170,595	2,231,810	3,238,690	5M	40	15	SRX18440414
39_3_BR5_WCE	39-3 (antisense hairpin dsRNA); Rep5; Whole-cell RNA	SBS	sRNA	8,101,564	4,682,672	1,966,983	2,415,077	5M	40	15	SRX18440417
39_4_BR3_WCE	39-4 (antisense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	10,097,314	6,088,634	2,735,967	2,871,119	5M	40	15	SRX18440419
39_4_BR4_WCE	39-4 (antisense hairpin dsRNA); Rep4; Whole-cell RNA	SBS	sRNA	9,096,078	5,571,183	2,063,029	2,531,192	5M	40	15	SRX18440421
39_4_BR5_WCE	39-4 (antisense hairpin dsRNA); Rep5; Whole-cell RNA	SBS	sRNA	8,955,890	5,701,212	2,384,300	2,323,248	5M	40	15	SRX18440423
40_4_BR1_WCE	40-4 (convergent promoter dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	10,539,903	5,870,745	3,030,879	3,666,217	5M	40	15	SRX18440424
40_4_BR2_WCE	40-4 (convergent promoter dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	11,539,980	6,552,942	3,420,311	3,899,515	5M	40	15	SRX18440425
40_4_BR3_WCE	40-4 (convergent promoter dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	11,278,924	6,307,795	3,090,108	3,820,454	5M	40	15	SRX18440428
40_4_BR4_WCE	40-4 (convergent promoter dsRNA); Rep4; Whole-cell RNA	SBS	sRNA	11,037,825	6,378,584	3,061,407	3,611,896	5M	40	15	SRX18440430
40_4_BR5_WCE	40-4 (convergent promoter dsRNA); Rep5; Whole-cell RNA	SBS	sRNA	12,372,275	8,143,211	4,391,935	2,979,269	5M	40	15	SRX18440432
40_6_BR1_WCE	40-6 (convergent promoter dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	16,837,198	9,931,377	5,044,951	5,131,296	5M	40	15	SRX18440433
40_6_BR2_WCE	40-6 (convergent promoter dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	12,073,502	7,496,523	4,105,111	3,376,473	5M	40	15	SRX18440435
40_6_BR3_WCE	40-6 (convergent promoter dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	13,651,526	8,228,369	4,199,076	3,658,880	5M	40	15	SRX18440438
40_6_BR4_WCE	40-6 (convergent promoter dsRNA); Rep4; Whole-cell RNA	SBS	sRNA	12,673,870	7,994,508	4,151,476	3,174,478	5M	40	15	SRX18440440
90_2A_BR1_WCE	90-2A (convergent promoter dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	12,299,769	4,688,704	1,945,950	5,562,037	5M	40	15	SRX18440441
90_2A_BR2_WCE	90-2A (convergent promoter dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	11,859,439	4,743,550	2,176,825	5,591,737	5M	40	15	SRX18440442
90_2A_BR3_WCE	90-2A (convergent promoter dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	11,762,432	3,409,934	1,510,362	6,736,449	5M	40	15	SRX18440443
90_5_BR1_WCE	90-5 (convergent promoter dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	10,783,278	3,939,278	1,392,971	5,024,792	5M	40	15	SRX18440445
90_5_BR2_WCE	90-5 (convergent promoter dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	12,000,341	5,259,024	2,048,642	5,201,173	5M	40	15	SRX18440447
90_5_BR3_WCE	90-5 (convergent promoter dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	12,333,500	5,213,828	1,915,739	5,285,294	5M	40	15	SRX18440450
91_2A_BR1_WCE	91-2A (convergent promoter dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	13,322,193	3,405,098	1,352,414	7,924,847	5M	40	15	SRX18440451
91_2A_BR2_WCE	91-2A (convergent promoter dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	15,368,426	4,285,181	1,692,716	8,561,009	5M	40	15	SRX18440452
91_2A_BR3_WCE	91-2A (convergent promoter dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	12,364,376	4,221,547	1,714,714	6,388,302	5M	40	15	SRX18440453
91_4B_BR1_WCE	91-4B (convergent promoter dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	14,035,180	4,849,192	2,039,595	7,121,457	5M	40	15	SRX18440457
91_4B_BR2_WCE	91-4B (convergent promoter dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	7,895,133	3,061,231	1,360,838	3,661,262	5M	40	15	SRX18440458
91_4B_BR3_WCE	91-4B (convergent promoter dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	14,497,211	5,623,154	2,528,874	6,744,301	5M	40	15	SRX18440460
94_1_BR1_WCE	94-1 (sense hairpin dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	14,690,485	5,866,220	2,918,945	5,813,551	5M	40	15	SRX18440462
94_1_BR2_WCE	94-1 (sense hairpin dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	14,641,055	6,837,984	3,048,739	5,435,157	5M	40	15	SRX18440464
94_1_BR3_WCE	94-1 (sense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	13,976,767	6,217,812	2,776,337	5,414,421	5M	40	15	SRX18440466
94_2_BR1_WCE	94-2 (sense hairpin dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	9,548,635	4,518,876	1,994,136	3,712,868	5M	40	15	SRX18440467
94_2_BR2_WCE	94-2 (sense hairpin dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	11,546,088	4,347,145	1,725,743	5,604,641	5M	40	15	SRX18440468
94_2_BR3_WCE	94-2 (sense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	12,378,041	6,243,414	2,954,462	4,509,776	5M	40	15	SRX18440469
95_1_BR1_WCE	95-1 (sense hairpin dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	14,592,783	6,230,212	2,759,030	5,729,299	5M	40	15	SRX18440472
95_1_BR2_WCE	95-1 (sense hairpin dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	12,899,717	5,631,078	2,548,162	5,596,603	5M	40	15	SRX18440474
95_1_BR3_WCE	95-1 (sense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	15,023,900	7,293,743	3,398,161	5,510,007	5M	40	15	SRX18440476
95_2A_BR1_WCE	95-2A (sense hairpin dsRNA); Rep1; Whole-cell RNA	SBS	sRNA	14,067,239	5,532,958	2,504,094	6,395,605	5M	40	15	SRX18440477
95_2A_BR2_WCE	95-2A (sense hairpin dsRNA); Rep2; Whole-cell RNA	SBS	sRNA	11,036,272	4,860,745	2,363,491	4,818,871	5M	40	15	SRX18440478
95_2A_BR3_WCE	95-2A (sense hairpin dsRNA); Rep3; Whole-cell RNA	SBS	sRNA	13,017,242	4,925,454	2,186,859	6,304,736	5M	40	15	SRX18440479
WT_BR1_WCE	WT; Rep1; Whole-cell RNA	SBS	sRNA	12,473,919	6,846,669	3,248,868	4,388,527	5M	40	15	SRX18440480
WT_BR1_WCE_v2	WT; Rep1; Whole-cell RNA_v2	SBS	sRNA	16,003,452	6,907,860	2,863,079	6,677,843	5M	40	15
WT_BR2_WCE	WT; Rep2; Whole-cell RNA	SBS	sRNA	12,941,883	7,061,371	3,225,951	4,421,434	5M	40	15	SRX18440482
WT_BR2_WCE_v2	WT; Rep2; Whole-cell RNA_v2	SBS	sRNA	12,066,290	4,991,577	2,122,380	5,053,662	5M	40	15
WT_BR3_WCE	WT; Rep3; Whole-cell RNA	SBS	sRNA	8,214,173	5,565,986	2,779,395	1,894,561	5M	40	15	SRX18440483
WT_BR3_WCE_v2	WT; Rep3; Whole-cell RNA_v2	SBS	sRNA	14,824,972	6,474,559	2,755,461	5,859,123	5M	40	15
WT_BR4_WCE	WT; Rep4; Whole-cell RNA	SBS	sRNA	8,753,646	5,638,571	2,287,153	2,315,811	5M	40	15	SRX18440484
WT_BR5_WCE	WT; Rep5; Whole-cell RNA	SBS	sRNA	14,268,931	8,640,736	3,358,123	4,102,775	5M	40	15	SRX18440485

* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50