Arabidopsis small RNA Chromosome Viewer

Below is a map of all the genes and reads that exist in the region around AT3G53016, model#1 (Chr 3, c strand, position 19,659,571 - 19,659,676). Use the chromosome image (linked to the intermediate-level viewer) to navigate. View a legend that explains the icons and colors in the image below.Adjust libraries/reads or change display options on the control panel.



0 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 23,459,830 Clickable chromosome detail map for at_sRNA2
Click to see list of reads19,637,269 - 19,637,614<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATTIRX1B<br>Class: DNA<br>19,647,789 - 19,647,831<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: HELITRONY1A<br>Class: RC/Helitron<br>19,647,832 - 19,648,851<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: ATREP4<br>Class: RC/Helitron<br>19,656,100 - 19,656,672<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: HELITRONY3<br>Class: RC/Helitron<br>19,666,811 - 19,667,178<br>Type: Retrotransposon<br>Score: 0<br>Strand: c<br>ID: ATLINE2<br>Class: LINE/L1<br>19,667,179 - 19,667,538<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATMU2<br>Class: DNA/MuDR<br>19,665,641 - 19,666,102<br>Type: Tandem<br>Score: 222<br>Percent Identity: 81.2<br>Number of Repeats: 7<br>Size per Repeat: 66<br>Total Length: 462<br>AT3G52950, model #1<br>Chr 3, w strand, position 19,634,455 - 19,636,819<br>Type: protein-codingAT3G52955, model #1<br>Chr 3, w strand, position 19,637,128 - 19,637,210<br>Type: tRNAAT3G52960, model #1<br>Chr 3, w strand, position 19,639,668 - 19,640,619<br>Type: protein-codingAT3G52980, model #1<br>Chr 3, w strand, position 19,645,660 - 19,646,962<br>Type: protein-codingAT3G52990, model #1<br>Chr 3, w strand, position 19,648,861 - 19,652,508<br>Type: protein-codingAT3G53000, model #1<br>Chr 3, w strand, position 19,654,068 - 19,656,080<br>Type: protein-codingAT3G53030, model #1<br>Chr 3, w strand, position 19,662,281 - 19,664,505<br>Type: protein-codingAT3G53050, model #1<br>Chr 3, w strand, position 19,669,084 - 19,669,774<br>Type: protein-codingAT3G53060, model #1<br>Chr 3, w strand, position 19,670,166 - 19,670,423<br>Type: protein-codingAT3G53065, model #1<br>Chr 3, w strand, position 19,672,873 - 19,673,471<br>Type: protein-codingAT3G53070, model #1<br>Chr 3, w strand, position 19,674,533 - 19,674,942<br>Type: protein-codingAT3G53075, model #1<br>Chr 3, w strand, position 19,676,524 - 19,677,104<br>Type: protein-codingAT3G53080, model #1<br>Chr 3, w strand, position 19,677,993 - 19,678,741<br>Type: protein-codingAT3G53090, model #1<br>Chr 3, w strand, position 19,679,208 - 19,684,644<br>Type: protein-codingAT3G52957, model #1<br>Chr 3, c strand, position 19,638,399 - 19,639,278<br>Type: protein-coding&lt;br&gt;This&amp;nbsp;gene&amp;nbsp;is&amp;nbsp;annotated&amp;nbsp;as&amp;nbsp;a&amp;nbsp;pseudogeneAT3G52970, model #1<br>Chr 3, c strand, position 19,641,306 - 19,643,276<br>Type: protein-codingAT3G53010, model #1<br>Chr 3, c strand, position 19,656,488 - 19,658,003<br>Type: protein-codingAT3G53015, model #1<br>Chr 3, c strand, position 19,659,301 - 19,659,413<br>Type: miRNAath-MIR771, model #1<br>Chr 3, c strand, position 19,659,301 - 19,659,413<br>Type: miRNAath-MIR851, model #1<br>Chr 3, c strand, position 19,659,532 - 19,659,715<br>Type: miRNAAT3G53016, model #1<br>Chr 3, c strand, position 19,659,571 - 19,659,676<br>Type: miRNAAT3G53020, model #1<br>Chr 3, c strand, position 19,660,517 - 19,662,025<br>Type: protein-codingAT3G53040, model #1<br>Chr 3, c strand, position 19,664,674 - 19,666,487<br>Type: protein-coding19,634,571 - 19,635,070: 3219,635,071 - 19,635,570: 7219,635,571 - 19,636,070: 6719,636,071 - 19,636,570: 7619,636,571 - 19,637,070: 2119,637,071 - 19,637,570: 3,53519,637,571 - 19,638,070: 519,638,071 - 19,638,570: 119,639,071 - 19,639,570: 119,639,571 - 19,640,070: 28719,640,071 - 19,640,570: 74019,640,571 - 19,641,070: 1119,641,071 - 19,641,570: 119,641,571 - 19,642,070: 419,642,571 - 19,643,070: 119,644,071 - 19,644,570: 519,644,571 - 19,645,070: 219,645,071 - 19,645,570: 119,645,571 - 19,646,070: 119,646,571 - 19,647,070: 219,647,571 - 19,648,070: 319,648,071 - 19,648,570: 10,16819,648,571 - 19,649,070: 9419,649,071 - 19,649,570: 9519,649,571 - 19,650,070: 26219,650,071 - 19,650,570: 9719,650,571 - 19,651,070: 12119,651,071 - 19,651,570: 22519,651,571 - 19,652,070: 5819,652,071 - 19,652,570: 9319,652,571 - 19,653,070: 519,654,071 - 19,654,570: 3719,654,571 - 19,655,070: 1219,655,071 - 19,655,570: 2619,655,571 - 19,656,070: 3719,656,071 - 19,656,570: 119,656,571 - 19,657,070: 919,657,071 - 19,657,570: 119,657,571 - 19,658,070: 419,658,071 - 19,658,570: 219,658,571 - 19,659,070: 319,659,071 - 19,659,570: 1919,659,571 - 19,660,070: 5319,660,571 - 19,661,070: 319,661,071 - 19,661,570: 519,661,571 - 19,662,070: 419,662,071 - 19,662,570: 3219,662,571 - 19,663,070: 2919,663,071 - 19,663,570: 6019,663,571 - 19,664,070: 2919,664,071 - 19,664,570: 3419,664,571 - 19,665,070: 119,666,071 - 19,666,570: 219,666,571 - 19,667,070: 119,667,071 - 19,667,570: 419,667,571 - 19,668,070: 95619,668,071 - 19,668,570: 2,68919,668,571 - 19,669,070: 57519,669,071 - 19,669,570: 1,25919,669,571 - 19,670,070: 119,670,071 - 19,670,570: 419,671,071 - 19,671,570: 519,671,571 - 19,672,070: 219,672,071 - 19,672,570: 319,672,571 - 19,673,070: 13719,673,071 - 19,673,570: 12219,673,571 - 19,674,070: 119,674,071 - 19,674,570: 119,674,571 - 19,675,070: 119,675,071 - 19,675,570: 119,675,571 - 19,676,070: 119,676,571 - 19,677,070: 319,677,071 - 19,677,570: 319,677,571 - 19,678,070: 119,678,071 - 19,678,570: 519,678,571 - 19,679,070: 219,679,071 - 19,679,570: 31719,679,571 - 19,680,070: 919,680,071 - 19,680,570: 1919,680,571 - 19,681,070: 1719,681,071 - 19,681,570: 3319,681,571 - 19,682,070: 2119,682,071 - 19,682,570: 2119,682,571 - 19,683,070: 1319,683,071 - 19,683,570: 1319,683,571 - 19,684,070: 2019,684,071 - 19,684,570: 2319,634,571 - 19,635,070: 219,635,071 - 19,635,570: 219,635,571 - 19,636,070: 819,636,071 - 19,636,570: 119,636,571 - 19,637,070: 319,637,071 - 19,637,570: 45619,637,571 - 19,638,070: 919,638,071 - 19,638,570: 319,639,071 - 19,639,570: 619,639,571 - 19,640,070: 2119,640,071 - 19,640,570: 1619,640,571 - 19,641,070: 419,641,071 - 19,641,570: 319,641,571 - 19,642,070: 219,642,071 - 19,642,570: 219,642,571 - 19,643,070: 319,644,071 - 19,644,570: 319,644,571 - 19,645,070: 319,645,571 - 19,646,070: 219,646,071 - 19,646,570: 319,646,571 - 19,647,070: 119,647,571 - 19,648,070: 519,648,071 - 19,648,570: 2,13919,648,571 - 19,649,070: 1319,649,071 - 19,649,570: 1519,650,071 - 19,650,570: 419,651,071 - 19,651,570: 519,651,571 - 19,652,070: 319,652,071 - 19,652,570: 219,652,571 - 19,653,070: 219,653,071 - 19,653,570: 319,653,571 - 19,654,070: 219,654,071 - 19,654,570: 319,654,571 - 19,655,070: 119,655,071 - 19,655,570: 119,655,571 - 19,656,070: 219,656,071 - 19,656,570: 219,656,571 - 19,657,070: 819,657,071 - 19,657,570: 619,657,571 - 19,658,070: 219,658,571 - 19,659,070: 219,659,071 - 19,659,570: 16,69419,659,571 - 19,660,070: 12,43519,660,071 - 19,660,570: 1619,660,571 - 19,661,070: 46319,661,071 - 19,661,570: 37219,661,571 - 19,662,070: 8919,662,071 - 19,662,570: 319,664,071 - 19,664,570: 519,664,571 - 19,665,070: 1219,665,071 - 19,665,570: 719,665,571 - 19,666,070: 1719,666,071 - 19,666,570: 919,666,571 - 19,667,070: 119,667,071 - 19,667,570: 1719,667,571 - 19,668,070: 86819,668,071 - 19,668,570: 2,63119,668,571 - 19,669,070: 1,02219,669,071 - 19,669,570: 1,28119,669,571 - 19,670,070: 1319,670,071 - 19,670,570: 319,670,571 - 19,671,070: 119,672,071 - 19,672,570: 519,672,571 - 19,673,070: 7119,673,071 - 19,673,570: 7019,674,571 - 19,675,070: 119,675,571 - 19,676,070: 119,676,071 - 19,676,570: 419,677,571 - 19,678,070: 119,678,571 - 19,679,070: 519,679,071 - 19,679,570: 22219,680,571 - 19,681,070: 119,681,571 - 19,682,070: 219,682,071 - 19,682,570: 119,683,571 - 19,684,070: 219,684,071 - 19,684,570: 2 Chromosome map