Arabidopsis small RNA Chromosome Viewer

Below is a map of all the genes and reads that exist in the region around AT4G13555, model#1 (Chr 4, c strand, position 7,878,652 - 7,878,760). Use the chromosome image (linked to the intermediate-level viewer) to navigate. View a legend that explains the icons and colors in the image below.Adjust libraries/reads or change display options on the control panel.



0 - 2,000,0002,000,000 - 4,000,0004,000,000 - 6,000,0006,000,000 - 8,000,0008,000,000 - 10,000,00010,000,000 - 12,000,00012,000,000 - 14,000,00014,000,000 - 16,000,00016,000,000 - 18,000,00018,000,000 - 18,585,056 Clickable chromosome detail map for at_sRNA2
Click to see list of reads7,852,686 - 7,853,798<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: ATREP11<br>Class: RC/Helitron<br>7,853,799 - 7,853,845<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP10B<br>Class: RC/Helitron<br>7,861,573 - 7,861,746<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: DT1<br>Class: DNA/Mariner<br>7,863,776 - 7,864,194<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP5<br>Class: RC/Helitron<br>7,864,195 - 7,864,308<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP3<br>Class: RC/Helitron<br>7,865,958 - 7,866,029<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP2<br>Class: RC/Helitron<br>7,866,030 - 7,866,312<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: DT1<br>Class: DNA/Mariner<br>7,869,863 - 7,870,192<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: VANDAL17<br>Class: DNA/MuDR<br>7,886,037 - 7,886,095<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP10C<br>Class: RC/Helitron<br>7,886,096 - 7,887,103<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP10A<br>Class: RC/Helitron<br>7,892,660 - 7,892,720<br>Type: Retrotransposon<br>Score: 0<br>Strand: w<br>ID: ATHILA7<br>Class: LTR/Gypsy<br>7,893,891 - 7,894,353<br>Type: Transposon<br>Score: 0<br>Strand: c<br>ID: HELITRONY3<br>Class: RC/Helitron<br>7,896,205 - 7,896,263<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP8<br>Class: RC/Helitron<br>7,896,264 - 7,897,400<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP8<br>Class: RC/Helitron<br>7,897,401 - 7,897,672<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: ATREP10D<br>Class: RC/Helitron<br>7,899,396 - 7,899,852<br>Type: Transposon<br>Score: 0<br>Strand: w<br>ID: TNAT1A<br>Class: DNA<br>7,878,181 - 7,878,565<br>Type: Inverted<br>Score: 126<br>Start1: 7,878,181<br>End1: 7,878,297<br>Start2: 7,878,448<br>End2: 7,878,565<br>Percent Identity: 72<br>Distance: 150<br>7,882,327 - 7,883,325<br>Type: Inverted<br>Score: 848<br>Start1: 7,882,327<br>End1: 7,882,815<br>Start2: 7,882,840<br>End2: 7,883,325<br>Percent Identity: 86<br>Distance: 24<br>7,882,329 - 7,883,327<br>Type: Inverted<br>Score: 808<br>Start1: 7,882,329<br>End1: 7,882,827<br>Start2: 7,882,829<br>End2: 7,883,327<br>Percent Identity: 38<br>Distance: 1<br>7,882,331 - 7,883,329<br>Type: Inverted<br>Score: 767<br>Start1: 7,882,331<br>End1: 7,882,829<br>Start2: 7,882,831<br>End2: 7,883,329<br>Percent Identity: 27<br>Distance: 1<br>7,882,333 - 7,883,331<br>Type: Inverted<br>Score: 733<br>Start1: 7,882,333<br>End1: 7,882,830<br>Start2: 7,882,833<br>End2: 7,883,331<br>Percent Identity: 28<br>Distance: 2<br>7,882,335 - 7,883,333<br>Type: Inverted<br>Score: 687<br>Start1: 7,882,335<br>End1: 7,882,832<br>Start2: 7,882,835<br>End2: 7,883,333<br>Percent Identity: 28<br>Distance: 2<br>7,882,337 - 7,883,335<br>Type: Inverted<br>Score: 647<br>Start1: 7,882,337<br>End1: 7,882,834<br>Start2: 7,882,837<br>End2: 7,883,335<br>Percent Identity: 28<br>Distance: 2<br>7,882,339 - 7,883,337<br>Type: Inverted<br>Score: 619<br>Start1: 7,882,339<br>End1: 7,882,837<br>Start2: 7,882,839<br>End2: 7,883,337<br>Percent Identity: 26<br>Distance: 1<br>7,882,341 - 7,883,339<br>Type: Inverted<br>Score: 573<br>Start1: 7,882,341<br>End1: 7,882,838<br>Start2: 7,882,841<br>End2: 7,883,339<br>Percent Identity: 30<br>Distance: 2<br>7,882,343 - 7,883,341<br>Type: Inverted<br>Score: 527<br>Start1: 7,882,343<br>End1: 7,882,840<br>Start2: 7,882,843<br>End2: 7,883,341<br>Percent Identity: 33<br>Distance: 2<br>7,882,345 - 7,883,343<br>Type: Inverted<br>Score: 481<br>Start1: 7,882,345<br>End1: 7,882,842<br>Start2: 7,882,845<br>End2: 7,883,343<br>Percent Identity: 27<br>Distance: 2<br>7,882,347 - 7,883,345<br>Type: Inverted<br>Score: 435<br>Start1: 7,882,347<br>End1: 7,882,844<br>Start2: 7,882,847<br>End2: 7,883,345<br>Percent Identity: 30<br>Distance: 2<br>7,882,349 - 7,883,347<br>Type: Inverted<br>Score: 389<br>Start1: 7,882,349<br>End1: 7,882,846<br>Start2: 7,882,849<br>End2: 7,883,347<br>Percent Identity: 30<br>Distance: 2<br>7,882,351 - 7,883,349<br>Type: Inverted<br>Score: 343<br>Start1: 7,882,351<br>End1: 7,882,848<br>Start2: 7,882,851<br>End2: 7,883,349<br>Percent Identity: 31<br>Distance: 2<br>7,882,353 - 7,883,351<br>Type: Inverted<br>Score: 297<br>Start1: 7,882,353<br>End1: 7,882,850<br>Start2: 7,882,853<br>End2: 7,883,351<br>Percent Identity: 26<br>Distance: 2<br>7,882,355 - 7,883,353<br>Type: Inverted<br>Score: 251<br>Start1: 7,882,355<br>End1: 7,882,852<br>Start2: 7,882,855<br>End2: 7,883,353<br>Percent Identity: 31<br>Distance: 2<br>7,882,357 - 7,883,355<br>Type: Inverted<br>Score: 205<br>Start1: 7,882,357<br>End1: 7,882,854<br>Start2: 7,882,857<br>End2: 7,883,355<br>Percent Identity: 27<br>Distance: 2<br>7,882,360 - 7,883,358<br>Type: Inverted<br>Score: 142<br>Start1: 7,882,360<br>End1: 7,882,857<br>Start2: 7,882,860<br>End2: 7,883,358<br>Percent Identity: 27<br>Distance: 2<br>7,883,015 - 7,883,984<br>Type: Inverted<br>Score: 692<br>Start1: 7,883,015<br>End1: 7,883,410<br>Start2: 7,883,586<br>End2: 7,883,984<br>Percent Identity: 82<br>Distance: 175<br>7,883,359 - 7,883,637<br>Type: Inverted<br>Score: 108<br>Start1: 7,883,359<br>End1: 7,883,410<br>Start2: 7,883,586<br>End2: 7,883,637<br>Percent Identity: 84<br>Distance: 175<br>7,884,951 - 7,885,756<br>Type: Inverted<br>Score: 597<br>Start1: 7,884,951<br>End1: 7,885,333<br>Start2: 7,885,380<br>End2: 7,885,756<br>Percent Identity: 79<br>Distance: 46<br>7,890,123 - 7,890,313<br>Type: Inverted<br>Score: 176<br>Start1: 7,890,123<br>End1: 7,890,210<br>Start2: 7,890,225<br>End2: 7,890,313<br>Percent Identity: 85<br>Distance: 14<br>7,890,481 - 7,890,799<br>Type: Inverted<br>Score: 197<br>Start1: 7,890,481<br>End1: 7,890,627<br>Start2: 7,890,649<br>End2: 7,890,799<br>Percent Identity: 76<br>Distance: 21<br>7,891,489 - 7,892,019<br>Type: Inverted<br>Score: 159<br>Start1: 7,891,489<br>End1: 7,891,730<br>Start2: 7,891,772<br>End2: 7,892,019<br>Percent Identity: 69<br>Distance: 41<br>7,897,398 - 7,897,833<br>Type: Inverted<br>Score: 175<br>Start1: 7,897,398<br>End1: 7,897,520<br>Start2: 7,897,710<br>End2: 7,897,833<br>Percent Identity: 80<br>Distance: 189<br>AT4G13510, model #1<br>Chr 4, w strand, position 7,858,183 - 7,859,918<br>Type: protein-codingAT4G13520, model #1<br>Chr 4, w strand, position 7,864,394 - 7,864,924<br>Type: protein-codingAT4G13530, model #1<br>Chr 4, w strand, position 7,866,719 - 7,868,742<br>Type: protein-codingAT4G13540, model #1<br>Chr 4, w strand, position 7,869,874 - 7,870,750<br>Type: protein-codingAT4G13570, model #1<br>Chr 4, w strand, position 7,884,516 - 7,885,664<br>Type: protein-codingAT4G13572, model #1<br>Chr 4, w strand, position 7,887,440 - 7,888,638<br>Type: protein-codingAT4G13580, model #1<br>Chr 4, w strand, position 7,900,374 - 7,901,328<br>Type: protein-codingAT4G13500, model #1<br>Chr 4, c strand, position 7,856,767 - 7,857,933<br>Type: protein-codingAT4G13505, model #1<br>Chr 4, c strand, position 7,858,000 - 7,859,691<br>Type: misc_RNAAT4G13550, model #1<br>Chr 4, c strand, position 7,871,057 - 7,876,963<br>Type: protein-codingAT4G13554, model #1<br>Chr 4, c strand, position 7,878,185 - 7,878,561<br>Type: miRNAath-MIR857, model #1<br>Chr 4, c strand, position 7,878,185 - 7,878,561<br>Type: miRNAAT4G13555, model #1<br>Chr 4, c strand, position 7,878,652 - 7,878,760<br>Type: miRNAath-MIR397b, model #1<br>Chr 4, c strand, position 7,878,652 - 7,878,760<br>Type: miRNAAT4G13560, model #1<br>Chr 4, c strand, position 7,879,561 - 7,880,383<br>Type: protein-codingAT4G13564, model #1<br>Chr 4, c strand, position 7,885,251 - 7,885,462<br>Type: miRNAath-MIR841, model #1<br>Chr 4, c strand, position 7,885,251 - 7,885,462<br>Type: miRNAath-MIR3932b, model #1<br>Chr 4, c strand, position 7,890,570 - 7,890,719<br>Type: miRNAAT4G13575, model #1<br>Chr 4, c strand, position 7,892,320 - 7,893,705<br>Type: protein-codingAT4G13590, model #1<br>Chr 4, c strand, position 7,901,216 - 7,903,961<br>Type: protein-coding7,854,152 - 7,854,651: 47,854,652 - 7,855,151: 17,855,152 - 7,855,651: 37,855,652 - 7,856,151: 27,856,652 - 7,857,151: 237,857,152 - 7,857,651: 87,857,652 - 7,858,151: 87,858,152 - 7,858,651: 2287,858,652 - 7,859,151: 3787,859,152 - 7,859,651: 3467,859,652 - 7,860,151: 477,860,152 - 7,860,651: 77,860,652 - 7,861,151: 17,861,652 - 7,862,151: 87,862,152 - 7,862,651: 27,862,652 - 7,863,151: 27,863,152 - 7,863,651: 6907,863,652 - 7,864,151: 447,864,152 - 7,864,651: 3997,864,652 - 7,865,151: 457,865,152 - 7,865,651: 77,865,652 - 7,866,151: 57,866,152 - 7,866,651: 67,866,652 - 7,867,151: 2637,867,152 - 7,867,651: 1277,867,652 - 7,868,151: 77,868,152 - 7,868,651: 847,868,652 - 7,869,151: 407,869,152 - 7,869,651: 97,869,652 - 7,870,151: 907,870,152 - 7,870,651: 1087,870,652 - 7,871,151: 257,871,152 - 7,871,651: 67,872,152 - 7,872,651: 17,872,652 - 7,873,151: 37,873,152 - 7,873,651: 37,874,152 - 7,874,651: 27,876,652 - 7,877,151: 57,877,152 - 7,877,651: 27,878,652 - 7,879,151: 17,879,152 - 7,879,651: 37,879,652 - 7,880,151: 1427,880,152 - 7,880,651: 457,880,652 - 7,881,151: 2137,881,152 - 7,881,651: 4717,881,652 - 7,882,151: 4,2787,882,152 - 7,882,651: 8527,882,652 - 7,883,151: 1,6817,883,152 - 7,883,651: 1,5467,883,652 - 7,884,151: 1,3767,884,152 - 7,884,651: 4707,884,652 - 7,885,151: 3907,885,152 - 7,885,651: 3957,885,652 - 7,886,151: 707,886,152 - 7,886,651: 227,886,652 - 7,887,151: 1,6187,887,152 - 7,887,651: 27,887,652 - 7,888,151: 107,888,152 - 7,888,651: 177,889,152 - 7,889,651: 1577,889,652 - 7,890,151: 1,7157,890,152 - 7,890,651: 737,890,652 - 7,891,151: 2347,891,152 - 7,891,651: 1967,891,652 - 7,892,151: 2267,892,152 - 7,892,651: 3327,892,652 - 7,893,151: 507,893,152 - 7,893,651: 47,893,652 - 7,894,151: 37,894,152 - 7,894,651: 47,894,652 - 7,895,151: 17,895,152 - 7,895,651: 37,895,652 - 7,896,151: 747,896,152 - 7,896,651: 4,8667,896,652 - 7,897,151: 8847,897,152 - 7,897,651: 117,897,652 - 7,898,151: 147,898,152 - 7,898,651: 57,898,652 - 7,899,151: 57,899,152 - 7,899,651: 6917,899,652 - 7,900,151: 8847,900,152 - 7,900,651: 27,900,652 - 7,901,151: 17,901,152 - 7,901,651: 57,901,652 - 7,902,151: 17,903,152 - 7,903,651: 37,854,152 - 7,854,651: 17,855,152 - 7,855,651: 27,856,152 - 7,856,651: 47,856,652 - 7,857,151: 2567,857,152 - 7,857,651: 1337,857,652 - 7,858,151: 617,858,152 - 7,858,651: 817,858,652 - 7,859,151: 797,859,152 - 7,859,651: 607,859,652 - 7,860,151: 277,860,152 - 7,860,651: 17,861,652 - 7,862,151: 67,862,152 - 7,862,651: 27,862,652 - 7,863,151: 27,863,152 - 7,863,651: 9747,863,652 - 7,864,151: 497,864,152 - 7,864,651: 357,864,652 - 7,865,151: 77,865,152 - 7,865,651: 47,865,652 - 7,866,151: 57,866,152 - 7,866,651: 47,866,652 - 7,867,151: 67,867,152 - 7,867,651: 47,867,652 - 7,868,151: 117,868,152 - 7,868,651: 97,868,652 - 7,869,151: 47,869,152 - 7,869,651: 57,869,652 - 7,870,151: 107,870,152 - 7,870,651: 237,870,652 - 7,871,151: 327,871,152 - 7,871,651: 227,871,652 - 7,872,151: 147,872,152 - 7,872,651: 57,872,652 - 7,873,151: 327,873,152 - 7,873,651: 77,873,652 - 7,874,151: 357,874,152 - 7,874,651: 657,874,652 - 7,875,151: 717,875,152 - 7,875,651: 187,875,652 - 7,876,151: 167,876,152 - 7,876,651: 327,876,652 - 7,877,151: 137,877,152 - 7,877,651: 37,877,652 - 7,878,151: 27,878,152 - 7,878,651: 1,1627,878,652 - 7,879,151: 8,2727,879,152 - 7,879,651: 57,879,652 - 7,880,151: 2187,880,152 - 7,880,651: 567,880,652 - 7,881,151: 3667,881,152 - 7,881,651: 4237,881,652 - 7,882,151: 8,3947,882,152 - 7,882,651: 3,8137,882,652 - 7,883,151: 9,0877,883,152 - 7,883,651: 3,7527,883,652 - 7,884,151: 3,6597,884,152 - 7,884,651: 1,9367,884,652 - 7,885,151: 1,7787,885,152 - 7,885,651: 20,7597,885,652 - 7,886,151: 2,3897,886,152 - 7,886,651: 317,886,652 - 7,887,151: 2997,887,152 - 7,887,651: 2027,887,652 - 7,888,151: 147,888,152 - 7,888,651: 157,888,652 - 7,889,151: 127,889,152 - 7,889,651: 177,889,652 - 7,890,151: 2,6517,890,152 - 7,890,651: 17,1967,890,652 - 7,891,151: 6,9157,891,152 - 7,891,651: 1667,891,652 - 7,892,151: 5927,892,152 - 7,892,651: 6707,892,652 - 7,893,151: 8257,893,152 - 7,893,651: 707,893,652 - 7,894,151: 437,894,652 - 7,895,151: 27,895,152 - 7,895,651: 37,895,652 - 7,896,151: 817,896,152 - 7,896,651: 3,0817,896,652 - 7,897,151: 6047,897,152 - 7,897,651: 2117,897,652 - 7,898,151: 257,898,152 - 7,898,651: 57,898,652 - 7,899,151: 37,899,152 - 7,899,651: 4257,899,652 - 7,900,151: 3457,900,152 - 7,900,651: 77,900,652 - 7,901,151: 177,901,152 - 7,901,651: 527,901,652 - 7,902,151: 977,902,152 - 7,902,651: 1237,902,652 - 7,903,151: 137,903,152 - 7,903,651: 105 Chromosome map