Arabidopsis small RNA Chromosome Viewer

Below is a map of all the genes and reads that exist in the region around ath-MIR399f, model#1 (Chr 2, w strand, position 14,444,997 - 14,445,114). Use the chromosome image (linked to the intermediate-level viewer) to navigate. View a legend that explains the icons and colors in the image below.Adjust libraries/reads or change display options on the control panel.



0 - 2,000,0002,000,000 - 4,000,0004,000,000 - 6,000,0006,000,000 - 8,000,0008,000,000 - 10,000,00010,000,000 - 12,000,00012,000,000 - 14,000,00014,000,000 - 16,000,00016,000,000 - 18,000,00018,000,000 - 19,698,289 Clickable chromosome detail map for at_sRNA2
Click to see list of reads14,439,816 - 14,439,845<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  HELITRONY3<br>Class:  RC/Helitron<br>14,439,846 - 14,439,875<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  ATREP10A<br>Class:  RC/Helitron<br>14,439,876 - 14,440,492<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  HELITRONY1D<br>Class:  RC/Helitron<br>14,440,493 - 14,440,569<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  HELITRONY3<br>Class:  RC/Helitron<br>14,457,340 - 14,457,371<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  VANDAL22<br>Class:  DNA/MuDR<br>14,457,372 - 14,458,307<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  ATREP1<br>Class:  RC/Helitron<br>14,458,396 - 14,458,571<br>Type:  Transposon<br>Score:  0<br>Strand:  c<br>ID:  VANDAL22<br>Class:  DNA/MuDR<br>14,457,514 - 14,458,400<br>Type:  Inverted<br>Score:  104<br>Start1:  14,457,514<br>End1:  14,457,612<br>Start2:  14,458,304<br>End2:  14,458,400<br>Percent Identity:  75<br>Distance:  691<br>AT2G34160, model #1<br>Chr 2, w strand, position 14,426,203 - 14,427,383<br>Type:  protein-codingAT2G34170, model #1<br>Chr 2, w strand, position 14,428,215 - 14,430,266<br>Type:  protein-codingAT2G34185, model #1<br>Chr 2, w strand, position 14,434,339 - 14,435,809<br>Type:  protein-codingAT2G34190, model #1<br>Chr 2, w strand, position 14,436,809 - 14,439,516<br>Type:  protein-codingAT2G34200, model #1<br>Chr 2, w strand, position 14,440,648 - 14,442,005<br>Type:  protein-codingath-MIR399e, model #1<br>Chr 2, w strand, position 14,443,504 - 14,443,612<br>Type:  miRNAAT2G34204, model #1<br>Chr 2, w strand, position 14,443,504 - 14,443,612<br>Type:  miRNAath-MIR399f, model #1<br>Chr 2, w strand, position 14,444,997 - 14,445,114<br>Type:  miRNAAT2G34208, model #1<br>Chr 2, w strand, position 14,444,997 - 14,445,114<br>Type:  miRNAAT2G34210, model #1<br>Chr 2, w strand, position 14,445,938 - 14,450,522<br>Type:  protein-codingAT2G34220, model #1<br>Chr 2, w strand, position 14,450,536 - 14,453,856<br>Type:  protein-codingAT2G34230, model #1<br>Chr 2, w strand, position 14,454,639 - 14,457,173<br>Type:  protein-codingAT2G34238, model #1<br>Chr 2, w strand, position 14,458,821 - 14,458,979<br>Type:  protein-codingAT2G34240, model #1<br>Chr 2, w strand, position 14,459,157 - 14,461,802<br>Type:  protein-codingAT2G34250, model #1<br>Chr 2, w strand, position 14,462,059 - 14,464,862<br>Type:  protein-codingAT2G34260, model #1<br>Chr 2, w strand, position 14,465,849 - 14,468,531<br>Type:  protein-codingAT2G34150, model #1<br>Chr 2, c strand, position 14,419,295 - 14,423,478<br>Type:  protein-codingAT2G34180, model #1<br>Chr 2, c strand, position 14,430,761 - 14,432,269<br>Type:  protein-codingAT2G34186, model #1<br>Chr 2, c strand, position 14,435,854 - 14,435,949<br>Type:  protein-codingath-MIR399d, model #1<br>Chr 2, c strand, position 14,442,978 - 14,443,077<br>Type:  miRNAAT2G34202, model #1<br>Chr 2, c strand, position 14,442,978 - 14,443,077<br>Type:  miRNAAT2G34224, model #1<br>Chr 2, c strand, position 14,454,088 - 14,454,258<br>Type:  protein-codingAT2G34270, model #1<br>Chr 2, c strand, position 14,468,752 - 14,469,876<br>Type:  protein-coding14,419,997 - 14,420,496: 414,420,997 - 14,421,496: 114,421,497 - 14,421,996: 114,421,997 - 14,422,496: 214,422,497 - 14,422,996: 714,422,997 - 14,423,496: 114,423,497 - 14,423,996: 114,423,997 - 14,424,496: 214,424,497 - 14,424,996: 114,424,997 - 14,425,496: 114,425,997 - 14,426,496: 4114,426,497 - 14,426,996: 7514,426,997 - 14,427,496: 8114,427,497 - 14,427,996: 1514,427,997 - 14,428,496: 3614,428,497 - 14,428,996: 5814,428,997 - 14,429,496: 3514,429,497 - 14,429,996: 4114,429,997 - 14,430,496: 1714,430,497 - 14,430,996: 414,430,997 - 14,431,496: 1314,431,497 - 14,431,996: 814,431,997 - 14,432,496: 714,432,497 - 14,432,996: 214,432,997 - 14,433,496: 14114,433,497 - 14,433,996: 114,433,997 - 14,434,496: 214,434,497 - 14,434,996: 214,435,497 - 14,435,996: 214,435,997 - 14,436,496: 114,436,497 - 14,436,996: 1314,436,997 - 14,437,496: 3514,437,497 - 14,437,996: 2814,437,997 - 14,438,496: 3914,438,497 - 14,438,996: 4314,438,997 - 14,439,496: 3414,439,497 - 14,439,996: 614,439,997 - 14,440,496: 114,440,497 - 14,440,996: 1614,440,997 - 14,441,496: 3314,441,497 - 14,441,996: 1714,441,997 - 14,442,496: 314,442,497 - 14,442,996: 114,442,997 - 14,443,496: 114,443,497 - 14,443,996: 15814,444,497 - 14,444,996: 214,444,997 - 14,445,496: 59,16114,445,497 - 14,445,996: 514,445,997 - 14,446,496: 314,446,497 - 14,446,996: 214,446,997 - 14,447,496: 114,447,497 - 14,447,996: 314,447,997 - 14,448,496: 414,448,497 - 14,448,996: 614,448,997 - 14,449,496: 114,449,497 - 14,449,996: 514,449,997 - 14,450,496: 314,450,497 - 14,450,996: 114,450,997 - 14,451,496: 614,451,497 - 14,451,996: 914,451,997 - 14,452,496: 414,452,497 - 14,452,996: 1314,452,997 - 14,453,496: 314,453,497 - 14,453,996: 414,453,997 - 14,454,496: 314,454,497 - 14,454,996: 314,454,997 - 14,455,496: 514,455,497 - 14,455,996: 314,455,997 - 14,456,496: 1314,456,497 - 14,456,996: 614,456,997 - 14,457,496: 2,59214,457,497 - 14,457,996: 98114,457,997 - 14,458,496: 2,35614,458,497 - 14,458,996: 10214,458,997 - 14,459,496: 714,459,497 - 14,459,996: 414,459,997 - 14,460,496: 1014,460,497 - 14,460,996: 914,460,997 - 14,461,496: 114,461,497 - 14,461,996: 214,461,997 - 14,462,496: 8714,462,497 - 14,462,996: 51414,462,997 - 14,463,496: 43414,463,497 - 14,463,996: 39114,463,997 - 14,464,496: 30314,464,497 - 14,464,996: 15014,464,997 - 14,465,496: 614,465,497 - 14,465,996: 1414,465,997 - 14,466,496: 914,466,497 - 14,466,996: 1114,466,997 - 14,467,496: 2114,467,497 - 14,467,996: 914,467,997 - 14,468,496: 2114,468,497 - 14,468,996: 914,468,997 - 14,469,496: 214,469,497 - 14,469,996: 414,419,997 - 14,420,496: 1914,420,497 - 14,420,996: 2214,420,997 - 14,421,496: 2214,421,497 - 14,421,996: 1314,421,997 - 14,422,496: 814,422,497 - 14,422,996: 214,422,997 - 14,423,496: 1214,423,497 - 14,423,996: 214,423,997 - 14,424,496: 114,424,497 - 14,424,996: 214,425,997 - 14,426,496: 114,426,997 - 14,427,496: 414,427,497 - 14,427,996: 314,427,997 - 14,428,496: 414,428,497 - 14,428,996: 114,428,997 - 14,429,496: 114,429,497 - 14,429,996: 314,430,497 - 14,430,996: 614,430,997 - 14,431,496: 414,431,497 - 14,431,996: 814,431,997 - 14,432,496: 214,432,497 - 14,432,996: 114,432,997 - 14,433,496: 414,433,997 - 14,434,496: 414,434,497 - 14,434,996: 114,435,497 - 14,435,996: 314,435,997 - 14,436,496: 214,436,497 - 14,436,996: 1914,436,997 - 14,437,496: 414,437,497 - 14,437,996: 2814,437,997 - 14,438,496: 1214,438,497 - 14,438,996: 1814,438,997 - 14,439,496: 1614,439,497 - 14,439,996: 914,440,497 - 14,440,996: 314,441,497 - 14,441,996: 114,442,497 - 14,442,996: 514,442,997 - 14,443,496: 16,63214,443,497 - 14,443,996: 114,444,497 - 14,444,996: 114,444,997 - 14,445,496: 3414,445,497 - 14,445,996: 114,445,997 - 14,446,496: 114,446,497 - 14,446,996: 314,446,997 - 14,447,496: 314,447,497 - 14,447,996: 314,448,497 - 14,448,996: 514,448,997 - 14,449,496: 214,449,497 - 14,449,996: 714,449,997 - 14,450,496: 314,450,497 - 14,450,996: 514,450,997 - 14,451,496: 214,451,997 - 14,452,496: 1214,452,497 - 14,452,996: 514,453,497 - 14,453,996: 414,453,997 - 14,454,496: 914,454,497 - 14,454,996: 514,454,997 - 14,455,496: 314,455,497 - 14,455,996: 414,455,997 - 14,456,496: 114,456,497 - 14,456,996: 114,456,997 - 14,457,496: 50014,457,497 - 14,457,996: 53714,457,997 - 14,458,496: 2,93214,458,497 - 14,458,996: 1,18714,458,997 - 14,459,496: 614,459,497 - 14,459,996: 414,459,997 - 14,460,496: 414,460,997 - 14,461,496: 114,461,997 - 14,462,496: 2514,462,497 - 14,462,996: 1314,462,997 - 14,463,496: 914,463,497 - 14,463,996: 1614,463,997 - 14,464,496: 1114,464,497 - 14,464,996: 2014,464,997 - 14,465,496: 714,465,497 - 14,465,996: 514,465,997 - 14,466,496: 414,466,497 - 14,466,996: 214,467,497 - 14,467,996: 114,467,997 - 14,468,496: 214,468,497 - 14,468,996: 414,468,997 - 14,469,496: 114,469,497 - 14,469,996: 3 Chromosome map