Arabidopsis small RNA Signature Analysis

The basic information for the sequence you selected is listed below. In the second table, all occurrences of this sequence are listed regardless of the genomic location you selected.

Sequence: GGACTGTTGTCTGGCTCGAGG
Length: 21 nucleotides
This small RNA sequence matches a miRNA
Number of hits: 2

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
12w19,176,128Phasing windowAT2G46685w19,176,12619,176,261miRNA

Other perfect matches found in genome in addition to that listed above.
This sequence is listed at the same location more than once (in table below), because there are multiple associated genes at that locus.

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
22w19,176,128Phasing windowath-MIR166aw19,176,10819,176,277miRNA
33w22,922,212Phasing windowAT3G61897w22,922,21022,922,321MIR166/MIR166B; miRNA
43w22,922,212Phasing windowath-MIR166bw22,922,20622,922,325miRNA




Expression Data for This Signature

SBS data are shown in table below. The raw abundance and totals are listed to the left (totals reflect only genome-matched signatures), with several columns to the right indicating the normalized values for different denominators. The normalization denominator may vary among libraries, because the total number of genome-matched reads varies substantially (depending on the depth of sequencing). Black text is used to identify the most appropriate normalized value.

Raw Data Normalization Denominator
Data typeRawTotal  1M2M5M10M
C0F12164,877,516  4489221443
C0F2272,789,465  10194897
d1F1123,574,742  371734
d1F2143,705,660  481938
d234F1981,417,116  69138346692
d234F22353,822,319  61123307615
r2F15822,195,923  2655301,3252,650
r2F22402,233,522  1072155371,075
r2FSb4,1075,728,276  7171,4343,5857,170
r2FNaSb1,3005,311,047  2454901,2242,448
r2FNa19021,834,656  4929832,4584,916
r2FNa22,2116,081,068  3647271,8183,636
r2FL5871,145,942  5121,0242,5615,122
r2FD3,1714,928,142  6431,2873,2176,434
C0FCSb2739,399,678  2958145290
C0FSb4139,361,008  4488221441
r2SC11383,743,342  3774184369
r2SH1182,165,395  54109272545
r2SNa132,082,930  13714
r2SC31963,997,922  4998245490
r2SNa22,3414,617,795  5071,0142,5355,070
r2SSb2,7243,278,680  8311,6624,1548,308
r2SNaSb3663,087,212  1192375931,186
r2SC213476,105  2755137273
r2SP99976,646  1012035071,014
C0RC1591,249,181  4794236472
C0RNi201,211,490  173383165
AtCM2,51814,488,208  1743488691,738
AT_Leaf9,8738,047,907  1,2272,4546,13412,268
At_miR1507OX_12051,478,373  1392776931,387
At_miR1507OX_23281,638,916  2004001,0012,001
At_miR2109OX_12131,760,055  1212426051,210
At_miR2109OX_23822,446,954  1563127811,561
At_miR2118aOX_11301,212,493  1072145361,072
At_miR2118aOX_22741,258,140  2184361,0892,178
At_miR2118bOX_12052,023,619  1012035071,013
At_miR2118bOX_21841,733,586  1062125311,061
At_miR2118cOX_15071,995,522  2545081,2702,541
At_miR2118cOX_22642,496,180  1062125291,058
At_miROX_control2071,838,508  1132255631,126
At_miROX_ck_21901,804,409  1052115261,053
hen1-81,3275,456,831  2434861,2162,432
hen1-8 ntp2-11,3946,244,400  2234461,1162,232
hen1-8 urt1-11,7946,081,292  2955901,4752,950
hen1-8 ntp4-11,3294,626,878  2875741,4362,872
hen1-8 ntp5-13,3445,676,073  5891,1782,9465,891
hen1-8 ntp6-116,6354,328,718  3,8437,68619,21538,429
hen1-8 ntp7-11,0904,409,080  2474941,2362,472
hen1-8 ntp8-12,3068,736,008  2645281,3202,640
hen1-8 ntp10-11,9286,387,459  3026041,5093,018
hen1-8 r25292,874,203  1843689201,841
hen1-8 heso1-19266,015,054  1543087701,539
hen1-8 mee441,2173,435,030  3547091,7713,543
Wt_d657,517,450  9174386
Col_d1,80411,692,099  1543097711,543


Link to FindMiRNA for this sequence