Arabidopsis small RNA Signature Analysis

The basic information for the sequence you selected is listed below. In the second table, all occurrences of this sequence are listed regardless of the genomic location you selected.

Sequence: TCGATAAACCTCTGCATCCAG
Length: 21 nucleotides
This small RNA sequence matches a miRNA
Number of hits: 2

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
15c2,634,956Phasing windowAT5G08185c2,634,1012,635,438microRNA162A

Other perfect matches found in genome in addition to that listed above.
This sequence is listed at the same location more than once (in table below), because there are multiple associated genes at that locus.

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
25c2,634,956Phasing windowath-MIR162ac2,634,9052,635,044miRNA
35c7,740,630Phasing windowAT5G23065c7,740,6107,740,697MIR162B; miRNA
45c7,740,630Phasing windowath-MIR162bc7,740,5987,740,708miRNA




Expression Data for This Signature

SBS data are shown in table below. The raw abundance and totals are listed to the left (totals reflect only genome-matched signatures), with several columns to the right indicating the normalized values for different denominators. The normalization denominator may vary among libraries, because the total number of genome-matched reads varies substantially (depending on the depth of sequencing). Black text is used to identify the most appropriate normalized value.

Raw Data Normalization Denominator
Data typeRawTotal  1M2M5M10M
C0F14954,877,516  1012035071,015
C0F27982,789,465  2865721,4302,861
d1F1513,574,742  142971143
d1F2693,705,660  193793186
d234F13361,417,116  2374741,1862,371
d234F21,6963,822,319  4448872,2194,437
r2F11,3802,195,923  6281,2573,1426,284
r2F25422,233,522  2434851,2132,427
r2FSb5,9605,728,276  1,0402,0815,20210,405
r2FNaSb7,7885,311,047  1,4662,9337,33214,664
r2FNa12,9081,834,656  1,5853,1707,92515,850
r2FNa29,3636,081,068  1,5403,0797,69815,397
r2FL1,3961,145,942  1,2182,4366,09112,182
r2FD4,9654,928,142  1,0072,0155,03710,075
C0FCSb549,399,678  6112957
C0FSb3809,361,008  4181203406
r2SC15693,743,342  1523047601,520
r2SH3972,165,395  1833679171,833
r2SNa11972,082,930  95189473946
r2SC31,8543,997,922  4649272,3194,637
r2SNa23,2424,617,795  7021,4043,5107,021
r2SSb1,9183,278,680  5851,1702,9255,850
r2SNaSb1,0703,087,212  3476931,7333,466
r2SC2485476,105  1,0192,0375,09310,187
r2SP1,301976,646  1,3322,6646,66113,321
C0RC1271,249,181  2243108216
C0RNi3101,211,490  2565121,2792,559
AtCM5,40014,488,208  3737451,8643,727
AT_Leaf4,8528,047,907  6031,2063,0146,029
At_miR1507OX_12841,478,373  1923849611,921
At_miR1507OX_24161,638,916  2545081,2692,538
At_miR2109OX_12881,760,055  1643278181,636
At_miR2109OX_26312,446,954  2585161,2892,579
At_miR2118aOX_12071,212,493  1713418541,707
At_miR2118aOX_22951,258,140  2344691,1722,345
At_miR2118bOX_14842,023,619  2394781,1962,392
At_miR2118bOX_22861,733,586  1653308251,650
At_miR2118cOX_14891,995,522  2454901,2252,450
At_miR2118cOX_25152,496,180  2064131,0322,063
At_miROX_control4461,838,508  2434851,2132,426
At_miROX_ck_23981,804,409  2214411,1032,206
hen1-89,0185,456,831  1,6533,3058,26316,526
hen1-8 ntp2-110,7746,244,400  1,7253,4518,62717,254
hen1-8 urt1-18,8576,081,292  1,4562,9137,28214,564
hen1-8 ntp4-17,6724,626,878  1,6583,3168,29116,581
hen1-8 ntp5-111,2105,676,073  1,9753,9509,87519,750
hen1-8 ntp6-141,7044,328,718  9,63419,26948,17196,343
hen1-8 ntp7-17,4024,409,080  1,6793,3588,39416,788
hen1-8 ntp8-113,1258,736,008  1,5023,0057,51215,024
hen1-8 ntp10-110,5116,387,459  1,6463,2918,22816,456
hen1-8 r24,7572,874,203  1,6553,3108,27516,551
hen1-8 heso1-16,1886,015,054  1,0292,0585,14410,288
hen1-8 mee446,3873,435,030  1,8593,7199,29718,594
Wt_d2,7697,517,450  3687371,8423,683
Col_d4,66111,692,099  3997971,9933,986


Link to FindMiRNA for this sequence