Arabidopsis small RNA Signature Analysis

The basic information for the sequence you selected is listed below. In the second table, all occurrences of this sequence are listed regardless of the genomic location you selected.

Sequence: TCGCTTGGTGCAGGTCGGGAA
Length: 21 nucleotides
This small RNA sequence matches a miRNA
Number of hits: 2

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
14w10,578,652Phasing windowAT4G19395w10,578,65210,578,755MIR168/MIR168A; miRNA

Other perfect matches found in genome in addition to that listed above.
This sequence is listed at the same location more than once (in table below), because there are multiple associated genes at that locus.

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
24w10,578,652Phasing windowath-MIR168aw10,578,63510,578,772miRNA
35c18,358,893Phasing windowAT5G45307c18,358,80518,358,893MIR168/MIR168B; miRNA
45c18,358,893Phasing windowath-MIR168bc18,358,78818,358,911miRNA




Expression Data for This Signature

SBS data are shown in table below. The raw abundance and totals are listed to the left (totals reflect only genome-matched signatures), with several columns to the right indicating the normalized values for different denominators. The normalization denominator may vary among libraries, because the total number of genome-matched reads varies substantially (depending on the depth of sequencing). Black text is used to identify the most appropriate normalized value.

Raw Data Normalization Denominator
Data typeRawTotal  1M2M5M10M
C0F122,9004,877,516  4,6959,39023,47546,950
C0F21,1882,789,465  4268522,1294,259
d1F112,1563,574,742  3,4016,80117,00334,005
d1F213,0543,705,660  3,5237,04517,61435,227
d234F131,0791,417,116  21,93143,862109,656219,312
d234F257,0483,822,319  14,92529,85074,625149,250
r2F156,1282,195,923  25,56051,120127,800255,601
r2F27,0112,233,522  3,1396,27815,69531,390
r2FSb84,0175,728,276  14,66729,33473,335146,671
r2FNaSb73,0055,311,047  13,74627,49268,729137,459
r2FNa139,9351,834,656  21,76743,534108,835217,670
r2FNa284,4716,081,068  13,89127,78269,454138,908
r2FL11,5431,145,942  10,07320,14650,365100,729
r2FD83,9124,928,142  17,02734,05485,136170,271
C0FCSb2,0779,399,678  2214421,1052,210
C0FSb11,0399,361,008  1,1792,3595,89611,793
r2SC148,4363,743,342  12,93925,87864,696129,392
r2SH14,7602,165,395  6,81613,63334,08268,163
r2SNa12,3172,082,930  1,1122,2255,56211,124
r2SC352,0333,997,922  13,01526,03065,075130,150
r2SNa2109,6884,617,795  23,75347,507118,767237,533
r2SSb39,4693,278,680  12,03824,07660,190120,381
r2SNaSb40,9893,087,212  13,27726,55466,385132,770
r2SC25,386476,105  11,31322,62556,563113,126
r2SP16,884976,646  17,28834,57586,439172,877
C0RC13,8911,249,181  3,1156,23015,57431,148
C0RNi10,3161,211,490  8,51517,03042,57685,151
AtCM24314,488,208  173484168
AT_Leaf221,1308,047,907  27,47754,953137,384274,767
At_miR1507OX_15241,478,373  3547091,7723,544
At_miR1507OX_26751,638,916  4128242,0594,119
At_miR2109OX_16631,760,055  3777531,8833,767
At_miR2109OX_21,2482,446,954  5101,0202,5505,100
At_miR2118aOX_14701,212,493  3887751,9383,876
At_miR2118aOX_27701,258,140  6121,2243,0606,120
At_miR2118bOX_19122,023,619  4519012,2534,507
At_miR2118bOX_25431,733,586  3136261,5663,132
At_miR2118cOX_11,3621,995,522  6831,3653,4136,825
At_miR2118cOX_27552,496,180  3026051,5123,025
At_miROX_control6751,838,508  3677341,8363,671
At_miROX_ck_27811,804,409  4338662,1644,328
hen1-85055,456,831  93185463925
hen1-8 ntp2-17336,244,400  1172355871,174
hen1-8 urt1-16976,081,292  1152295731,146
hen1-8 ntp4-14584,626,878  99198495990
hen1-8 ntp5-19365,676,073  1653308251,649
hen1-8 ntp6-15,1894,328,718  1,1992,3975,99411,987
hen1-8 ntp7-13724,409,080  84169422844
hen1-8 ntp8-17768,736,008  89178444888
hen1-8 ntp10-15026,387,459  79157393786
hen1-8 r22652,874,203  92184461922
hen1-8 heso1-13416,015,054  57113283567
hen1-8 mee443493,435,030  1022035081,016
Wt_d18,7277,517,450  2,4914,98212,45624,911
Col_d8,09011,692,099  6921,3843,4606,919


Link to FindMiRNA for this sequence