Arabidopsis small RNA Signature Analysis

The basic information for the sequence you selected is listed below. In the second table, all occurrences of this sequence are listed regardless of the genomic location you selected.

Sequence: TGACAGAAGAGAGTGAGCAC
Length: 20 nucleotides
This small RNA sequence matches a miRNA
Number of hits: 6

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
12c10,676,553Phasing windowAT2G25095c10,676,47210,676,553MIR156A; miRNA

Other perfect matches found in genome in addition to that listed above.
This sequence is listed at the same location more than once (in table below), because there are multiple associated genes at that locus.

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
22c10,676,553Phasing windowath-MIR156ac10,676,45110,676,573miRNA
34w15,074,945Phasing windowAT4G30972w15,074,94515,075,024MIR156B; miRNA
44w15,074,945Phasing windowath-MIR156bw15,074,89915,075,081miRNA
54c15,415,510Phasing windowAT4G31877c15,413,31915,415,873MIR156C; miRNA
64c15,415,510Phasing windowath-MIR156cc15,415,41815,415,521miRNA
75c3,456,732Phasing windowAT5G10945c3,456,6473,456,732MIR156D; miRNA
85c3,456,732Phasing windowAT5G10946c3,455,6073,457,306
95c3,456,732Phasing windowath-MIR156dc3,456,6323,456,749miRNA
105w3,867,213Phasing windowAT5G11977w3,867,2133,867,308MIR156E; miRNA
115w3,867,213Phasing windowath-MIR156ew3,867,2073,867,313miRNA
125w9,136,126Phasing windowAT5G26146w9,135,9139,138,264other RNA
135w9,136,126Phasing windowAT5G26147w9,136,1269,136,215MIR156F; miRNA
145w9,136,126Phasing windowath-MIR156fw9,136,1069,136,237miRNA
155w9,136,126Phasing windowAT5G26146w9,135,9139,138,264other RNA
165w9,136,126Phasing windowAT5G26147w9,136,1269,136,215MIR156F; miRNA
175w9,136,126Phasing windowath-MIR156fw9,136,1069,136,237miRNA




Expression Data for This Signature

SBS data are shown in table below. The raw abundance and totals are listed to the left (totals reflect only genome-matched signatures), with several columns to the right indicating the normalized values for different denominators. The normalization denominator may vary among libraries, because the total number of genome-matched reads varies substantially (depending on the depth of sequencing). Black text is used to identify the most appropriate normalized value.

Raw Data Normalization Denominator
Data typeRawTotal  1M2M5M10M
C0F138,7884,877,516  7,95215,90539,76279,524
C0F223,4392,789,465  8,40316,80542,01384,027
d1F110,9473,574,742  3,0626,12515,31230,623
d1F215,8683,705,660  4,2828,56421,41042,821
d234F125,0581,417,116  17,68235,36588,412176,824
d234F2112,8163,822,319  29,51559,030147,575295,151
r2F161,3632,195,923  27,94455,888139,720279,441
r2F234,6382,233,522  15,50831,01677,541155,082
r2FSb206,8935,728,276  36,11872,236180,589361,178
r2FNaSb309,6965,311,047  58,312116,623291,558583,117
r2FNa142,7991,834,656  23,32846,656116,640233,281
r2FNa2432,4256,081,068  71,110142,220355,550711,100
r2FL15,5101,145,942  13,53527,06967,674135,347
r2FD257,2334,928,142  52,197104,394260,984521,968
C0FCSb1,3089,399,678  1392786961,392
C0FSb38,3709,361,008  4,0998,19820,49540,989
r2SC11,145,9903,743,342  306,141612,2821,530,7043,061,409
r2SH464,9372,165,395  214,712429,4251,073,5622,147,123
r2SNa1587,0162,082,930  281,822563,6441,409,1112,818,222
r2SC31,483,4663,997,922  371,059742,1191,855,2963,710,593
r2SNa21,912,7514,617,795  414,213828,4262,071,0654,142,131
r2SSb789,5543,278,680  240,815481,6291,204,0732,408,146
r2SNaSb1,051,9673,087,212  340,750681,5001,703,7493,407,498
r2SC21,368476,105  2,8735,74714,36728,733
r2SP36,518976,646  37,39174,782186,956373,912
C0RC18471,249,181  6781,3563,3906,780
C0RNi1,3761,211,490  1,1362,2725,67911,358
AtCM74,37814,488,208  5,13410,26725,66851,337
AT_Leaf28,5628,047,907  3,5497,09817,74535,490
At_miR1507OX_13031,478,373  2054101,0252,050
At_miR1507OX_24401,638,916  2685371,3422,685
At_miR2109OX_12901,760,055  1653308241,648
At_miR2109OX_25702,446,954  2334661,1652,329
At_miR2118aOX_12071,212,493  1713418541,707
At_miR2118aOX_24841,258,140  3857691,9233,847
At_miR2118bOX_14042,023,619  2003999981,996
At_miR2118bOX_22891,733,586  1673338341,667
At_miR2118cOX_14891,995,522  2454901,2252,450
At_miR2118cOX_24492,496,180  1803608991,799
At_miROX_control4611,838,508  2515011,2542,507
At_miROX_ck_22571,804,409  1422857121,424
hen1-84715,456,831  86173432863
hen1-8 ntp2-16026,244,400  96193482964
hen1-8 urt1-11,0506,081,292  1733458631,727
hen1-8 ntp4-16264,626,878  1352716761,353
hen1-8 ntp5-11,2035,676,073  2124241,0602,119
hen1-8 ntp6-13,9144,328,718  9041,8084,5219,042
hen1-8 ntp7-16194,409,080  1402817021,404
hen1-8 ntp8-11,0738,736,008  1232466141,228
hen1-8 ntp10-16426,387,459  1012015031,005
hen1-8 r22402,874,203  84167418835
hen1-8 heso1-19076,015,054  1513027541,508
hen1-8 mee443673,435,030  1072145341,068
Wt_d9,4347,517,450  1,2552,5106,27512,549
Col_d3,25711,692,099  2795571,3932,786


Link to FindMiRNA for this sequence