Arabidopsis small RNA Signature Analysis

The basic information for the sequence you selected is listed below. In the second table, all occurrences of this sequence are listed regardless of the genomic location you selected.

Sequence: TTCCACAGCTTTCTTGAACTG
Length: 21 nucleotides
This small RNA sequence matches a miRNA
Number of hits: 1

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
12c4,142,463Phasing windowAT2G10606c4,142,3234,142,473MIR396A; miRNA

Other perfect matches found in genome in addition to that listed above.
This sequence is listed at the same location more than once (in table below), because there are multiple associated genes at that locus.

#ChrStrandCoordinatePhasing AnalysisGeneGene strandGene startGene stopGene function
22c4,142,463Phasing windowath-MIR396ac4,142,3234,142,473miRNA




Expression Data for This Signature

SBS data are shown in table below. The raw abundance and totals are listed to the left (totals reflect only genome-matched signatures), with several columns to the right indicating the normalized values for different denominators. The normalization denominator may vary among libraries, because the total number of genome-matched reads varies substantially (depending on the depth of sequencing). Black text is used to identify the most appropriate normalized value.

Raw Data Normalization Denominator
Data typeRawTotal  1M2M5M10M
C0F11174,877,516  2448120240
C0F2332,789,465  122459118
d1F1533,574,742  153074148
d1F2963,705,660  2652130259
d234F1911,417,116  64128321642
d234F23323,822,319  87174434869
r2F12302,195,923  1052095241,047
r2F26682,233,522  2995981,4952,991
r2FSb1,6565,728,276  2895781,4452,891
r2FNaSb2,2825,311,047  4308592,1484,297
r2FNa14941,834,656  2695391,3462,693
r2FNa22,6206,081,068  4318622,1544,308
r2FL2431,145,942  2124241,0602,121
r2FD1,7144,928,142  3486961,7393,478
C0FCSb89,399,678  1249
C0FSb459,361,008  5102448
r2SC13083,743,342  82165411823
r2SH3522,165,395  1633258131,626
r2SNa11282,082,930  61123307615
r2SC39993,997,922  2505001,2492,499
r2SNa23644,617,795  79158394788
r2SSb7963,278,680  2434861,2142,428
r2SNaSb1,0903,087,212  3537061,7653,531
r2SC2467476,105  9811,9624,9049,809
r2SP100976,646  1022055121,024
C0RC13,4231,249,181  2,7405,48013,70127,402
C0RNi2,3141,211,490  1,9103,8209,55019,100
AtCM1,22214,488,208  84169422843
AT_Leaf7,9488,047,907  9881,9754,9389,876
At_miR1507OX_13,5341,478,373  2,3904,78111,95223,905
At_miR1507OX_25,3491,638,916  3,2646,52716,31932,637
At_miR2109OX_13,0331,760,055  1,7233,4468,61617,232
At_miR2109OX_28,1422,446,954  3,3276,65516,63733,274
At_miR2118aOX_12,1831,212,493  1,8003,6019,00218,004
At_miR2118aOX_24,5081,258,140  3,5837,16617,91535,831
At_miR2118bOX_15,0882,023,619  2,5145,02912,57225,143
At_miR2118bOX_22,7651,733,586  1,5953,1907,97515,950
At_miR2118cOX_17,6271,995,522  3,8227,64419,11038,221
At_miR2118cOX_25,7722,496,180  2,3124,62511,56223,123
At_miROX_control6,9571,838,508  3,7847,56818,92037,840
At_miROX_ck_24,7671,804,409  2,6425,28413,20926,419
hen1-85165,456,831  95189473946
hen1-8 ntp2-17766,244,400  1242496211,243
hen1-8 urt1-14936,081,292  81162405811
hen1-8 ntp4-15804,626,878  1252516271,254
hen1-8 ntp5-16785,676,073  1192395971,194
hen1-8 ntp6-13,3294,328,718  7691,5383,8457,690
hen1-8 ntp7-14044,409,080  92183458916
hen1-8 ntp8-19158,736,008  1052095241,047
hen1-8 ntp10-15406,387,459  85169423845
hen1-8 r24572,874,203  1593187951,590
hen1-8 heso1-15896,015,054  98196490979
hen1-8 mee444113,435,030  1202395981,196
Wt_d3,0507,517,450  4068112,0294,057
Col_d3,21211,692,099  2755491,3742,747


Link to FindMiRNA for this sequence