N. benthi small RNA Library Information

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Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
25Bm_Sat Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat) at 25 deg C in Nicotiana benthamiana.SBSsRNA18,189,203900,692495,45838,72610M3418SRR3452219
Nben_Flr_a Nicotiana benthamiana flower. Rep 1SBSsRNA7,613,7536,835,485195,95790,84010M3418SRR2087144
Nben_Flr_b Nicotiana benthamiana flower. Rep 2SBSsRNA17,317,94614,515,1354,244,724995,36110M3418SRR2087143
Nben_Stem_a Nicotiana benthamiana stem. Rep 1SBSsRNA2,536,4052,237,218754,79242,96010M3418SRR2087153
Nben_Stem_b Nicotiana benthamiana stem. Rep 2SBSsRNA12,799,36011,459,6642,790,703143,03810M3418SRR2087154
Nben_Root_a Nicotiana benthamiana root. Rep 1SBSsRNA4,043,0583,382,498590,160122,23910M3418SRR2087151
Nben_Root_b Nicotiana benthamiana root. Rep 2SBSsRNA5,452,9504,855,8471,739,028119,42210M3418SRR2087152
Nben_Leaf_a Nicotiana benthamiana leaf. Rep 1SBSsRNA4,039,2393,450,5741,458,198189,63410M3418SRR2087149
Nben_Leaf_b Nicotiana benthamiana leaf. Rep 2SBSsRNA3,396,5692,865,9881,014,554153,78410M3418SRR2087150
Nben_Seedling_a Nicotiana benthamiana seedling. Rep 1SBSsRNA4,157,9363,370,346995,774345,33910M3418SRR2087147
Nben_Seedling_b Nicotiana benthamiana seedling. Rep 2SBSsRNA10,492,6768,891,749878,736549,12410M3418SRR2087148
NBen_LeafBTI sRNA Nicotiana AtlasSBSsRNA2,544,7592,124,862386,592192,06810M3418SRR2087132
25Bm Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and No salt at 25 deg C in Nicotiana benthamiana.SBSsRNA17,938,8551,875,367826,82596,37210M3418SRR3452218
25Mock Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat), Mock controlat 25 deg C in Nicotiana benthamiana.SBSsRNA17,156,55515,007,4435,362,052326,31710M3418SRR3452217
18Bm_Sat Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat) at 18 deg C in Nicotiana benthamiana.SBSsRNA19,464,3951,141,536676,70435,20910M3418SRR3452216
18Bm Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and No salt at 18 deg C in Nicotiana benthamiana.SBSsRNA18,562,8421,387,039738,31557,64510M3418SRR3452215
18Mock Profile of small interfering RNAs derived from Beet black scorch virus (Bm) and its associated satellite RNA (sat), Mock controlat 18 deg C in Nicotiana benthamiana.SBSsRNA17,445,89415,274,4795,194,486403,45710M3418SRR3452214
cym19s_i p19syn_nb.cym19s.p19ip-input; GSM2043450: p19syn_nb.cym19s.p19ip-input; Nicotiana benthamiana; ncRNA-SeqSBSsRNA17,672,7533,557,4161,752,263234,26110M3418SRR3112374
cym19s_ip p19syn_nb.cym19s.p19ip-ip; GSM2043451: p19syn_nb.cym19s.p19ip-ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA24,735,381450,931212,09416,43410M3418SRR3112375
mock_i p19syn_nb.mock.p19ip-input; GSM2043452: p19syn_nb.mock.p19ip-input; Nicotiana benthamiana; ncRNA-SeqSBSsRNA21,274,80717,329,5126,194,0831,091,30710M3418SRR3112376
mock_ip p19syn_nb.mock.p19ip-ip; GSM2043453: p19syn_nb.mock.p19ip-ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA11,734,4769,921,5433,786,50463,86310M3418SRR3112377
rsv_i1 wt_nb.cymrsv.p19ip-input; GSM2043454: wt_nb.cymrsv.p19ip-input; Nicotiana benthamiana; ncRNA-SeqSBSsRNA18,046,8751,441,228361,352152,55110M3418SRR3112378
rsv_ip wt_nb.cymrsv.p19ip-ip; GSM2043455: wt_nb.cymrsv.p19ip-ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA45,488,101380,044220,80521,17310M3418SRR3112379
cym19_1ip wt_nb.cym19s.agoip_ago1ip; GSM2043456: wt_nb.cym19s.agoip_ago1ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA5,987,4592,155,301118,757334,03810M3418SRR3112380
cym19_2ip wt_nb.cym19s.agoip_ago2ip; GSM2043457: wt_nb.cym19s.agoip_ago2ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA4,429,508741,25494,80629,54410M3418SRR3112381
cym19_i wt_nb.cym19s.agoip_input; GSM2043458: wt_nb.cym19s.agoip_input; Nicotiana benthamiana; ncRNA-SeqSBSsRNA7,044,842801,787421,6128,68410M3418SRR3112382
rsv_1ip wt_nb.cymrsv.agoip_ago1ip; GSM2043459: wt_nb.cymrsv.agoip_ago1ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA5,867,0831,599,04243,79149,16810M3418SRR3112383
rsv_2ip wt_nb.cymrsv.agoip_ago2ip; GSM2043460: wt_nb.cymrsv.agoip_ago2ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA7,904,6471,415,704236,334121,72210M3418SRR3112384
rsv_agoi wt_nb.cymrsv.agoip_input; GSM2043461: wt_nb.cymrsv.agoip_input; Nicotiana benthamiana; ncRNA-SeqSBSsRNA8,195,831320,843229,2843,41510M3418SRR3112385
m_1ip wt_nb.mock.agoip_ago1ip; GSM2043462: wt_nb.mock.agoip_ago1ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA1,766,879971,868106,41620,43710M3418SRR3112386
m_2ip wt_nb.mock.agoip_ago2ip; GSM2043463: wt_nb.mock.agoip_ago2ip; Nicotiana benthamiana; ncRNA-SeqSBSsRNA952,1769,9692,4607,32310M3418SRR3112387
m_i wt_nb.mock.agoip_input; GSM2043464: wt_nb.mock.agoip_input; Nicotiana benthamiana; ncRNA-SeqSBSsRNA7,592,7556,091,1612,144,19083,32910M3418SRR3112388
cym19_d wt_nb.cym19s.direct; GSM2043465: wt_nb.cym19s.direct; Nicotiana benthamiana; ncRNA-SeqSBSsRNA5,456,8821,213,959406,54924,05510M3418SRR3112389
mock_d wt_nb.mock.direct; GSM2043466: wt_nb.mock.direct; Nicotiana benthamiana; ncRNA-SeqSBSsRNA4,345,0093,575,771953,32979,55210M3418SRR3112390
cym19_1ip2 wt_nb.cym19s.agoip_ago1ip.biorep.sRNA; GSM2257527: wt_nb.cym19s.agoip_ago1ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA5,932,4202,831,797309,862292,59910M3418SRR3993342
cym19_2ip2 wt_nb.cym19s.agoip_ago2ip.biorep.sRNA; GSM2257528: wt_nb.cym19s.agoip_ago2ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA8,175,5553,573,453964,724220,77810M3418SRR3993343
cym19_i2 wt_nb.cym19s.agoip_input.biorep.sRNA; GSM2257529: wt_nb.cym19s.agoip_input.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA8,601,523924,091569,56221,88610M3418SRR3993344
rsv_1ip2 wt_nb.cymrsv.agoip_ago1ip.biorep.sRNA; GSM2257530: wt_nb.cymrsv.agoip_ago1ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA5,669,3202,115,109225,18748,07410M3418SRR3993345
rsv_2ip2 wt_nb.cymrsv.agoip_ago2ip.biorep.sRNA; GSM2257531: wt_nb.cymrsv.agoip_ago2ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA14,942,0573,581,821953,55598,97710M3418SRR3993346
rsv_i2 wt_nb.cymrsv.agoip_input.biorep.sRNA; GSM2257532: wt_nb.cymrsv.agoip_input.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA16,254,3471,859,5871,124,48234,12910M3418SRR3993347
m_1ip2 wt_nb.mock.agoip_ago1ip.biorep.sRNA; GSM2257533: wt_nb.mock.agoip_ago1ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA14,785,41712,601,1682,287,203388,16010M3418SRR3993348
m_2ip2 wt_nb.mock.agoip_ago2ip.biorep.sRNA; GSM2257534: wt_nb.mock.agoip_ago2ip.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA3,552,3832,582,005327,723189,09810M3418SRR3993349
m_i2 wt_nb.mock.agoip_input.biorep.sRNA; GSM2257535: wt_nb.mock.agoip_input.biorep.sRNA; Nicotiana benthamiana; ncRNA-SeqSBSsRNA13,099,89011,370,0373,749,035171,01110M3418SRR3993350
pvx_i PVX; GSM2536365: Input PVX; Nicotiana benthamiana; ncRNA-SeqSBSsRNA28,959,33317,579,1028,113,846111,36410M3418SRR5342592
HCPro_i PVX-P1-6x-HCPro; GSM2536366: Input PVX-P1-6x-HCPro; Nicotiana benthamiana; ncRNA-SeqSBSsRNA33,663,55219,992,3368,000,231172,12810M3418SRR5342593
HCPro_t2 PVX-P1-6x-HCPro; GSM2536367: HCPro sample 2; Nicotiana benthamiana; ncRNA-SeqSBSsRNA44,921,61937,383,6741,273,655191,90910M3418SRR5342594
HCPromut_t PVX-P1-6x-HCPro mutB; GSM2536368: HCPro mutB sample 2; Nicotiana benthamiana; ncRNA-SeqSBSsRNA38,781,92833,952,553897,763201,94510M3418SRR5342595
Nb_miR173 sRNA_Nben_miR173; GSM1698356: Nicotiana benthamiana miR173; Nicotiana benthamiana; miRNA-SeqSBSsRNA9,062,0572,580,4891,243,126258,63510M3418SRR2043938
Nb_Leaves sRNA_Nben_Leaves_ctrl; GSM1698355: Nicotiana benthamiana control; Nicotiana benthamiana; miRNA-SeqSBSsRNA9,606,5272,744,0271,282,115462,88210M3418SRR2043937
NNTMV8hr NNTMV8hr; Genome-wide characterization of miRNAs involved in N gene-mediated immunity in response to tobacco mosaic virus in Nicotiana. benthamianaSBSsRNA9,642,0284,987,8522,525,728157,65210M3018SRR1648195
NNTMV2hr NNTMV2hr; Genome-wide characterization of miRNAs involved in N gene-mediated immunity in response to tobacco mosaic virus in Nicotiana. benthamianaSBSsRNA8,866,2236,121,5232,632,445473,69510M3018SRR1648196
NNTMV0hr NNTMV0hr; Genome-wide characterization of miRNAs involved in N gene-mediated immunity in response to tobacco mosaic virus in Nicotiana. benthamianaSBSsRNA10,049,0716,520,2392,961,515365,93810M3018SRR1648197
Nb_1Va sRNA_Nben_Leaf_Axt_1a; GSM1186337: Library1V_run1; Nicotiana benthamiana; RNA-SeqSBSsRNA10,730,5888,569,7892,403,4081,033,95510M3418SRR935015
Nb_1Vb sRNA_Nben_Leaf_Axt_1b; GSM1186338: Library1V_run2; Nicotiana benthamiana; RNA-SeqSBSsRNA12,218,5309,824,9282,666,9521,272,88210M3418SRR935016
Nb_1Ua sRNA_Nben_Leaf_Axt_2a; GSM1186335: Library1U_run1; Nicotiana benthamiana; RNA-SeqSBSsRNA10,233,4468,346,4912,234,459815,83510M3418SRR935013
Nb_1Ub sRNA_Nben_Leaf_Axt_2b; GSM1186336: Library1U_run2; Nicotiana benthamiana; RNA-SeqSBSsRNA11,748,2099,678,3612,496,4871,005,26910M3418SRR935014
Ngfp10_1 Nicotiana benthamiana bud 3-6 mm, wild type. Rep 1SBSsRNA25,812,13322,286,0718,421,892334,88810M3418
Ngfp5_1 Nicotiana benthamiana bud 3-6 mm, wild type. Rep 2SBSsRNA29,127,19125,811,7528,329,795329,73810M3418
Npg6_1 Nicotiana benthamiana bud 3-6 mm, mutant B2 protein. Rep 1SBSsRNA32,286,87927,341,1829,108,740508,02110M3418
Npg8_2 Nicotiana benthamiana bud 3-6 mm, mutant B2 protein. Rep 2SBSsRNA28,946,93925,013,17610,114,295362,66310M3418
Npg_12_1 Nicotiana benthamiana bud 3-6 mm, mutant B2 protein. Rep 3SBSsRNA32,571,59328,801,69511,266,821366,06710M3418



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".
* The number of genomic-matches per small RNA ("hits") has been capped in this database at the following maximum: 50