Rice small RNA Library Information

Please click on the library name to open a new window that shows the information about the conditions under which the plants and RNA were obtained. Adjust libraries/reads to display on the control panel.

Code Title Technology Library Type Total
Sequences		 Genome
Matched
Reads*		 Distinct
Genome
Matched
Reads*		 t/r/sn/snoRNA
Matched
Reads		 Norm.
Base
Value		 Max.
Len. of
Reads		 Min.
Len. of
Reads		 GEO
Accession
Number
Gl1Da Glume, rep 1aSBSsRNA1,120,723562,671294,145188,7872M3618
Gl1Db Glume, rep 1bSBSsRNA4,694,0052,505,138855,308864,4262M3418
Gl2D Glume, rep 2SBSsRNA10,803,9108,330,3782,866,281540,1032M3618
Gl3D Glume, rep 3SBSsRNA16,402,49710,785,3933,286,9911,536,9242M3118
Pl1I Palea/lemma, rep 1SBSsRNA6,225,6114,770,2241,738,182459,8272M3518
Pl2D Palea/lemma, rep 2SBSsRNA11,205,3838,761,0492,644,1251,061,0492M3518
Lo1I Lodicule, rep 1SBSsRNA3,684,4242,735,4941,196,119361,9832M3518
Lo2D Lodicule, rep 2SBSsRNA8,108,7886,359,6742,505,758381,5312M3418
Lo3D Lodicule, rep 3SBSsRNA11,357,3957,666,5472,832,2951,304,5212M3118
AC1I Anther, control rep 1SBSsRNA351,782183,121134,69147,3642M3118
AC2D Anther, control rep 2SBSsRNA5,652,5773,193,9661,520,207905,2862M3618
AC3D Anther, control rep 3SBSsRNA9,112,8785,692,9382,645,2761,775,2612M3418
An4D Anther, control rep 4SBSsRNA13,754,7319,059,4863,034,0421,703,0892M3118
AD1I Anther, drought rep 1SBSsRNA284,661150,20098,52532,3002M3118
AD2D Anther, drought rep 2SBSsRNA3,095,0151,904,966803,328550,0192M3618
ACd1D Anther, cold rep 1SBSsRNA2,985,6251,944,619885,663398,0772M3618
Pi1I Pistil, rep 1SBSsRNA4,725,1033,655,1811,255,932236,8812M3518
Pi1D Pistil, rep 2SBSsRNA8,040,0406,156,2932,184,633567,0222M3618
OSA303 Panicle stage 1, < 2 cm, rep 1SBSsRNA16,869,52110,537,4854,680,4373,026,14710M3418
OSA457 Panicle stage 1, < 2 cm, rep 2SBSsRNA33,523,40522,490,8357,414,8107,988,04110M3418
OSA304 Panicle stage 2, < 5 cm, rep 1SBSsRNA79,083,98847,173,3547,981,22415,792,96210M3418
OSA458 Panicle stage 2, < 5 cm, rep 2SBSsRNA34,185,75622,501,5576,731,9278,737,86510M3418
OSA305 Panicle stage 3, < 8 cm, rep 1SBSsRNA19,244,12711,448,7254,410,3153,837,83610M3418
OSA459 Panicle stage 3, < 8 cm, rep 2SBSsRNA26,534,57317,603,3935,559,2756,563,38510M3418
OSA306 Panicle stage 4,< 12 cm, rep 1SBSsRNA27,372,96818,125,1826,251,2103,615,43910M3418
OSA460 Panicle stage 4,< 12 cm, rep 2SBSsRNA28,972,76613,721,3354,141,79812,776,11910M3418
OSA307 Panicle stage 5, > 12 cm, rep 1SBSsRNA20,997,70613,214,9724,927,1103,316,00210M3418
OSA461 Panicle stage 5, > 12 cm, rep 2SBSsRNA30,364,39717,648,6755,315,2849,676,45210M3418
OSA308 Panicle stage 6, after anthesis, rep 1SBSsRNA19,892,7799,612,2033,301,2226,092,27010M3418
OSA462 Panicle stage 6, after anthesis, rep 2SBSsRNA27,986,45218,889,9495,760,6296,324,70610M3418



* Does not include the data listed in the column "t/r/sn/snoRNA Matched Reads".