N. benthi small RNA Chromosome Viewer

Below is a map of all the genes and reads that exist in the region of Chr 3, position 40,550,000 - 40,600,000. Use the chromosome image (linked to the intermediate-level viewer) to navigate. View a legend that explains the icons and colors in the image below.Adjust libraries/reads or change display options on the control panel.



0 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 40,000,00040,000,000 - 45,000,00045,000,000 - 50,000,00050,000,000 - 55,000,00055,000,000 - 60,000,00060,000,000 - 65,000,00065,000,000 - 70,000,00070,000,000 - 75,000,00075,000,000 - 80,000,00080,000,000 - 85,000,00085,000,000 - 90,000,00090,000,000 - 95,000,00095,000,000 - 100,000,000100,000,000 - 105,000,000105,000,000 - 110,000,000110,000,000 - 115,000,000115,000,000 - 120,000,000120,000,000 - 125,000,000125,000,000 - 129,979,819 Clickable chromosome detail map for nbenthi_sRNA_SOL
Click to see list of reads40,587,693 - 40,587,731<br>Type: Other<br>Score: 233<br>Strand: w<br>ID: tRNA-Arg4_OS<br>Class: tRNA<br>40,567,107 - 40,572,748<br>Type: Inverted<br>Score: 1994<br>Start1: 40,567,107<br>End1: 40,569,498<br>Start2: 40,570,336<br>End2: 40,572,748<br>Percent Identity: 75<br>Distance: 837<br>40,552,561 - 40,552,997<br>Type: Tandem<br>Score: 425<br>Percent Identity: 76<br>Number of Repeats: 8.8<br>Size per Repeat: 51<br>Total Length: 437<br>40,552,561 - 40,552,997<br>Type: Tandem<br>Score: 639<br>Percent Identity: 88<br>Number of Repeats: 2.2<br>Size per Repeat: 202<br>Total Length: 437<br>40,552,658 - 40,552,997<br>Type: Tandem<br>Score: 526<br>Percent Identity: 89<br>Number of Repeats: 3.3<br>Size per Repeat: 101<br>Total Length: 340<br>40,554,807 - 40,555,529<br>Type: Tandem<br>Score: 1268<br>Percent Identity: 94<br>Number of Repeats: 2<br>Size per Repeat: 360<br>Total Length: 723<br>40,562,149 - 40,562,432<br>Type: Tandem<br>Score: 509<br>Percent Identity: 95<br>Number of Repeats: 2.4<br>Size per Repeat: 116<br>Total Length: 284<br>40,570,336 - 40,570,713<br>Type: Tandem<br>Score: 403<br>Percent Identity: 83<br>Number of Repeats: 2.6<br>Size per Repeat: 144<br>Total Length: 378<br>40,570,339 - 40,570,642<br>Type: Tandem<br>Score: 427<br>Percent Identity: 89<br>Number of Repeats: 4.2<br>Size per Repeat: 72<br>Total Length: 304<br>40,570,339 - 40,570,741<br>Type: Tandem<br>Score: 473<br>Percent Identity: 80<br>Number of Repeats: 1.9<br>Size per Repeat: 216<br>Total Length: 403<br>40,577,563 - 40,577,866<br>Type: Tandem<br>Score: 434<br>Percent Identity: 89<br>Number of Repeats: 4.2<br>Size per Repeat: 72<br>Total Length: 304<br>40,550,000 - 40,550,499: 140,550,500 - 40,550,999: 2740,551,000 - 40,551,499: 2840,551,500 - 40,551,999: 1640,552,000 - 40,552,499: 1140,552,500 - 40,552,999: 2040,553,000 - 40,553,499: 440,553,500 - 40,553,999: 4240,554,000 - 40,554,499: 1640,554,500 - 40,554,999: 2140,555,500 - 40,555,999: 740,556,500 - 40,556,999: 1040,557,000 - 40,557,499: 27540,557,500 - 40,557,999: 140,558,500 - 40,558,999: 340,559,000 - 40,559,499: 240,559,500 - 40,559,999: 2040,561,000 - 40,561,499: 240,561,500 - 40,561,999: 5940,562,000 - 40,562,499: 140,562,500 - 40,562,999: 340,563,500 - 40,563,999: 4040,565,000 - 40,565,499: 140,565,500 - 40,565,999: 240,566,000 - 40,566,499: 240,566,500 - 40,566,999: 2640,567,000 - 40,567,499: 1340,567,500 - 40,567,999: 540,568,000 - 40,568,499: 38640,568,500 - 40,568,999: 2540,569,000 - 40,569,499: 240,569,500 - 40,569,999: 340,570,000 - 40,570,499: 240,570,500 - 40,570,999: 2840,571,000 - 40,571,499: 8440,571,500 - 40,571,999: 2640,572,000 - 40,572,499: 1040,572,500 - 40,572,999: 2640,573,000 - 40,573,499: 440,573,500 - 40,573,999: 1140,574,000 - 40,574,499: 340,574,500 - 40,574,999: 140,575,000 - 40,575,499: 240,575,500 - 40,575,999: 840,576,000 - 40,576,499: 440,576,500 - 40,576,999: 140,577,000 - 40,577,499: 640,577,500 - 40,577,999: 2340,578,000 - 40,578,499: 2240,578,500 - 40,578,999: 5040,579,000 - 40,579,499: 1240,579,500 - 40,579,999: 440,580,000 - 40,580,499: 1140,580,500 - 40,580,999: 440,582,000 - 40,582,499: 140,582,500 - 40,582,999: 540,583,000 - 40,583,499: 140,583,500 - 40,583,999: 640,584,000 - 40,584,499: 1340,584,500 - 40,584,999: 140,585,000 - 40,585,499: 1040,585,500 - 40,585,999: 140,586,000 - 40,586,499: 540,586,500 - 40,586,999: 840,587,000 - 40,587,499: 3140,587,500 - 40,587,999: 6140,588,000 - 40,588,499: 440,588,500 - 40,588,999: 540,589,000 - 40,589,499: 140,589,500 - 40,589,999: 840,590,000 - 40,590,499: 240,590,500 - 40,590,999: 440,591,000 - 40,591,499: 1840,591,500 - 40,591,999: 3140,592,500 - 40,592,999: 640,593,000 - 40,593,499: 1240,593,500 - 40,593,999: 140,594,500 - 40,594,999: 140,595,000 - 40,595,499: 440,595,500 - 40,595,999: 1040,596,000 - 40,596,499: 240,596,500 - 40,596,999: 140,597,000 - 40,597,499: 240,597,500 - 40,597,999: 140,598,000 - 40,598,499: 240,598,500 - 40,598,999: 240,599,000 - 40,599,499: 2240,599,500 - 40,599,999: 140,550,000 - 40,550,499: 340,550,500 - 40,550,999: 7440,551,000 - 40,551,499: 3540,551,500 - 40,551,999: 840,552,000 - 40,552,499: 3140,552,500 - 40,552,999: 1540,553,000 - 40,553,499: 440,553,500 - 40,553,999: 440,554,000 - 40,554,499: 540,554,500 - 40,554,999: 1140,555,000 - 40,555,499: 240,555,500 - 40,555,999: 240,556,000 - 40,556,499: 840,556,500 - 40,556,999: 740,557,000 - 40,557,499: 5340,557,500 - 40,557,999: 240,558,500 - 40,558,999: 4440,559,000 - 40,559,499: 540,559,500 - 40,559,999: 740,560,000 - 40,560,499: 640,561,000 - 40,561,499: 240,561,500 - 40,561,999: 22240,562,000 - 40,562,499: 3140,563,000 - 40,563,499: 240,563,500 - 40,563,999: 640,564,000 - 40,564,499: 940,565,000 - 40,565,499: 640,565,500 - 40,565,999: 1240,566,500 - 40,566,999: 2540,567,000 - 40,567,499: 9240,567,500 - 40,567,999: 2340,568,000 - 40,568,499: 36140,568,500 - 40,568,999: 1240,569,000 - 40,569,499: 540,569,500 - 40,569,999: 4340,570,000 - 40,570,499: 2140,570,500 - 40,570,999: 440,571,000 - 40,571,499: 3240,571,500 - 40,571,999: 1040,572,000 - 40,572,499: 440,572,500 - 40,572,999: 240,573,000 - 40,573,499: 140,574,000 - 40,574,499: 140,574,500 - 40,574,999: 140,575,000 - 40,575,499: 340,575,500 - 40,575,999: 140,576,000 - 40,576,499: 340,576,500 - 40,576,999: 240,577,000 - 40,577,499: 340,577,500 - 40,577,999: 440,578,000 - 40,578,499: 4540,578,500 - 40,578,999: 6640,579,000 - 40,579,499: 240,579,500 - 40,579,999: 640,580,000 - 40,580,499: 340,580,500 - 40,580,999: 840,581,000 - 40,581,499: 340,581,500 - 40,581,999: 640,582,000 - 40,582,499: 640,582,500 - 40,582,999: 240,583,000 - 40,583,499: 840,583,500 - 40,583,999: 1540,584,000 - 40,584,499: 740,584,500 - 40,584,999: 440,585,000 - 40,585,499: 1040,585,500 - 40,585,999: 740,586,000 - 40,586,499: 940,586,500 - 40,586,999: 1040,587,000 - 40,587,499: 1740,587,500 - 40,587,999: 48840,588,000 - 40,588,499: 1240,588,500 - 40,588,999: 440,589,000 - 40,589,499: 1240,589,500 - 40,589,999: 240,590,000 - 40,590,499: 440,590,500 - 40,590,999: 2940,591,000 - 40,591,499: 22640,591,500 - 40,591,999: 2440,592,000 - 40,592,499: 640,592,500 - 40,592,999: 640,593,000 - 40,593,499: 540,594,500 - 40,594,999: 940,595,000 - 40,595,499: 540,595,500 - 40,595,999: 440,596,000 - 40,596,499: 640,596,500 - 40,596,999: 140,597,000 - 40,597,499: 140,597,500 - 40,597,999: 2740,598,000 - 40,598,499: 440,598,500 - 40,598,999: 240,599,000 - 40,599,499: 1340,599,500 - 40,599,999: 5 Chromosome map