N. benthi small RNA Chromosome Viewer

Below is a map of all the genes and reads that exist in the region of Chr 3, position 46,300,000 - 46,350,000. Use the chromosome image (linked to the intermediate-level viewer) to navigate. View a legend that explains the icons and colors in the image below.Adjust libraries/reads or change display options on the control panel.



0 - 5,000,0005,000,000 - 10,000,00010,000,000 - 15,000,00015,000,000 - 20,000,00020,000,000 - 25,000,00025,000,000 - 30,000,00030,000,000 - 35,000,00035,000,000 - 40,000,00040,000,000 - 45,000,00045,000,000 - 50,000,00050,000,000 - 55,000,00055,000,000 - 60,000,00060,000,000 - 65,000,00065,000,000 - 70,000,00070,000,000 - 75,000,00075,000,000 - 80,000,00080,000,000 - 85,000,00085,000,000 - 90,000,00090,000,000 - 95,000,00095,000,000 - 100,000,000100,000,000 - 105,000,000105,000,000 - 110,000,000110,000,000 - 115,000,000115,000,000 - 120,000,000120,000,000 - 125,000,000125,000,000 - 129,979,819 Clickable chromosome detail map for nbenthi_sRNA_SOL
Click to see list of reads46,332,738 - 46,332,902<br>Type: Retrotransposon<br>Score: 311<br>Strand: w<br>ID: NbenV_sc1<br>Class: LTR/Caulimovirus<br>46,340,223 - 46,340,353<br>Type: Retrotransposon<br>Score: 294<br>Strand: c<br>ID: NbenV_sc1<br>Class: LTR/Caulimovirus<br>46,345,918 - 46,346,033<br>Type: Retrotransposon<br>Score: 285<br>Strand: c<br>ID: NbenV_sc1<br>Class: LTR/Caulimovirus<br>46,332,298 - 46,340,795<br>Type: Inverted<br>Score: 5440<br>Start1: 46,332,298<br>End1: 46,334,204<br>Start2: 46,338,887<br>End2: 46,340,795<br>Percent Identity: 98<br>Distance: 4682<br>46,343,996 - 46,349,080<br>Type: Inverted<br>Score: 3333<br>Start1: 46,343,996<br>End1: 46,345,292<br>Start2: 46,347,797<br>End2: 46,349,080<br>Percent Identity: 98<br>Distance: 2504<br>46,318,219 - 46,319,150<br>Type: Tandem<br>Score: 1439<br>Percent Identity: 89<br>Number of Repeats: 1.9<br>Size per Repeat: 490<br>Total Length: 932<br>46,327,162 - 46,327,883<br>Type: Tandem<br>Score: 759<br>Percent Identity: 81<br>Number of Repeats: 3.4<br>Size per Repeat: 216<br>Total Length: 722<br>46,327,178 - 46,327,923<br>Type: Tandem<br>Score: 687<br>Percent Identity: 77<br>Number of Repeats: 10.5<br>Size per Repeat: 69<br>Total Length: 746<br>46,327,323 - 46,327,885<br>Type: Tandem<br>Score: 485<br>Percent Identity: 79<br>Number of Repeats: 4<br>Size per Repeat: 144<br>Total Length: 563<br>46,300,000 - 46,300,499: 35946,300,500 - 46,300,999: 1246,301,000 - 46,301,499: 11046,301,500 - 46,301,999: 3046,302,000 - 46,302,499: 446,302,500 - 46,302,999: 7246,303,000 - 46,303,499: 5046,303,500 - 46,303,999: 6946,304,000 - 46,304,499: 646,304,500 - 46,304,999: 18946,305,000 - 46,305,499: 1,41446,305,500 - 46,305,999: 2046,306,000 - 46,306,499: 946,306,500 - 46,306,999: 1346,307,000 - 46,307,499: 446,307,500 - 46,307,999: 2246,308,000 - 46,308,499: 146,308,500 - 46,308,999: 1446,309,000 - 46,309,499: 16346,309,500 - 46,309,999: 42346,310,000 - 46,310,499: 1546,310,500 - 46,310,999: 55746,311,000 - 46,311,499: 6546,311,500 - 46,311,999: 22646,312,000 - 46,312,499: 7846,313,000 - 46,313,499: 4846,314,500 - 46,314,999: 13746,315,000 - 46,315,499: 49346,315,500 - 46,315,999: 2446,316,000 - 46,316,499: 2246,316,500 - 46,316,999: 846,317,500 - 46,317,999: 1846,318,000 - 46,318,499: 7346,318,500 - 46,318,999: 7746,319,000 - 46,319,499: 1046,320,000 - 46,320,499: 3646,320,500 - 46,320,999: 29846,321,000 - 46,321,499: 9046,321,500 - 46,321,999: 10446,322,000 - 46,322,499: 1546,322,500 - 46,322,999: 7846,323,000 - 46,323,499: 2546,323,500 - 46,323,999: 1646,324,000 - 46,324,499: 1646,324,500 - 46,324,999: 146,325,000 - 46,325,499: 1146,325,500 - 46,325,999: 1346,326,000 - 46,326,499: 9046,326,500 - 46,326,999: 346,327,000 - 46,327,499: 5546,327,500 - 46,327,999: 15346,328,000 - 46,328,499: 6546,328,500 - 46,328,999: 32346,329,000 - 46,329,499: 11346,329,500 - 46,329,999: 2946,330,000 - 46,330,499: 3146,330,500 - 46,330,999: 1546,331,000 - 46,331,499: 146,331,500 - 46,331,999: 11246,332,000 - 46,332,499: 1846,332,500 - 46,332,999: 14246,333,000 - 46,333,499: 2446,333,500 - 46,333,999: 10846,334,000 - 46,334,499: 2,12946,334,500 - 46,334,999: 8746,335,000 - 46,335,499: 28546,335,500 - 46,335,999: 2146,336,000 - 46,336,499: 10346,336,500 - 46,336,999: 23946,337,000 - 46,337,499: 44346,337,500 - 46,337,999: 1,11946,338,000 - 46,338,499: 746,338,500 - 46,338,999: 27846,339,000 - 46,339,499: 1046,339,500 - 46,339,999: 1146,340,000 - 46,340,499: 9446,340,500 - 46,340,999: 1246,341,000 - 46,341,499: 20246,341,500 - 46,341,999: 4446,342,000 - 46,342,499: 1246,342,500 - 46,342,999: 6546,343,000 - 46,343,499: 31046,343,500 - 46,343,999: 8846,344,000 - 46,344,499: 1246,344,500 - 46,344,999: 19946,345,000 - 46,345,499: 746,345,500 - 46,345,999: 2,12546,346,000 - 46,346,499: 9846,346,500 - 46,346,999: 22446,347,000 - 46,347,499: 746,347,500 - 46,347,999: 5646,348,000 - 46,348,499: 9046,348,500 - 46,348,999: 4046,349,000 - 46,349,499: 546,300,000 - 46,300,499: 6446,300,500 - 46,300,999: 3646,301,000 - 46,301,499: 3046,301,500 - 46,301,999: 1046,302,000 - 46,302,499: 546,302,500 - 46,302,999: 946,303,000 - 46,303,499: 1846,303,500 - 46,303,999: 11046,304,000 - 46,304,499: 246,304,500 - 46,304,999: 54246,305,000 - 46,305,499: 59646,305,500 - 46,305,999: 646,306,000 - 46,306,499: 1546,306,500 - 46,306,999: 946,307,000 - 46,307,499: 146,307,500 - 46,307,999: 946,308,000 - 46,308,499: 246,308,500 - 46,308,999: 446,309,000 - 46,309,499: 47846,309,500 - 46,309,999: 19446,310,000 - 46,310,499: 646,310,500 - 46,310,999: 22746,311,000 - 46,311,499: 2646,311,500 - 46,311,999: 20746,312,000 - 46,312,499: 4546,312,500 - 46,312,999: 646,313,000 - 46,313,499: 2746,313,500 - 46,313,999: 146,314,000 - 46,314,499: 746,314,500 - 46,314,999: 11746,315,000 - 46,315,499: 49846,315,500 - 46,315,999: 1746,316,000 - 46,316,499: 9646,316,500 - 46,316,999: 346,317,000 - 46,317,499: 246,317,500 - 46,317,999: 3346,318,000 - 46,318,499: 6746,318,500 - 46,318,999: 9846,319,000 - 46,319,499: 1246,320,000 - 46,320,499: 2946,320,500 - 46,320,999: 27146,321,000 - 46,321,499: 11646,321,500 - 46,321,999: 6246,322,000 - 46,322,499: 8646,322,500 - 46,322,999: 14846,323,000 - 46,323,499: 2046,323,500 - 46,323,999: 346,324,000 - 46,324,499: 546,324,500 - 46,324,999: 746,325,000 - 46,325,499: 1346,325,500 - 46,325,999: 1346,326,000 - 46,326,499: 1546,326,500 - 46,326,999: 446,327,000 - 46,327,499: 5446,327,500 - 46,327,999: 11846,328,000 - 46,328,499: 6446,328,500 - 46,328,999: 35346,329,000 - 46,329,499: 8546,329,500 - 46,329,999: 646,330,000 - 46,330,499: 2346,330,500 - 46,330,999: 846,331,000 - 46,331,499: 1146,331,500 - 46,331,999: 6746,332,000 - 46,332,499: 1546,332,500 - 46,332,999: 15346,333,000 - 46,333,499: 1546,333,500 - 46,333,999: 546,334,000 - 46,334,499: 45046,334,500 - 46,334,999: 2246,335,000 - 46,335,499: 32646,335,500 - 46,335,999: 1946,336,000 - 46,336,499: 37646,336,500 - 46,336,999: 10146,337,000 - 46,337,499: 3546,337,500 - 46,337,999: 38846,338,500 - 46,338,999: 32346,339,000 - 46,339,499: 11846,339,500 - 46,339,999: 10246,340,000 - 46,340,499: 3446,340,500 - 46,340,999: 3946,341,000 - 46,341,499: 40546,341,500 - 46,341,999: 546,342,000 - 46,342,499: 2646,342,500 - 46,342,999: 18546,343,000 - 46,343,499: 6546,343,500 - 46,343,999: 11946,344,000 - 46,344,499: 21446,344,500 - 46,344,999: 9746,345,000 - 46,345,499: 746,345,500 - 46,345,999: 51046,346,000 - 46,346,499: 6446,346,500 - 46,346,999: 11846,347,000 - 46,347,499: 32146,347,500 - 46,347,999: 22746,348,000 - 46,348,499: 11446,348,500 - 46,348,999: 1146,349,000 - 46,349,499: 27 Chromosome map